Atom Nomenclature for 1R4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1R4

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
C03 C03
N04 N04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
O10 O10
O11 O11
O13 O13
C14 C14
S15 S15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
N22 N22
O23 O23
O24 O24
C25 C25
C26 C26
O27 O27
N28 N28
C29 C29
C30 C30
O31 O31
O32 O32
N01 N01
H031 H031
H041 H041
H062 H062
H061 H061
H072 H072
H071 H071
H081 H081
H1 H1
H141 H141
H142 H142
H161 H161
H162 H162
H191 H191
H201 H201
H251 H251
H261 H261
H281 H281
H292 H292
H291 H291
H2 H2
H01 H01
H011 H011