Atom Nomenclature for 1PE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1PE

Atom Name (V3) Atom Name (V2)
OH2 OH2
C12 C12
C22 C22
OH3 OH3
C13 C13
C23 C23
OH4 OH4
C14 C14
C24 C24
OH5 OH5
C15 C15
C25 C25
OH6 OH6
C16 C16
C26 C26
OH7 OH7
HO2 HO2
H121 1H12
H122 2H12
H221 1H22
H222 2H22
H131 1H13
H132 2H13
H231 1H23
H232 2H23
H141 1H14
H142 2H14
H241 1H24
H242 2H24
H151 1H15
H152 2H15
H251 1H25
H252 2H25
H161 1H16
H162 2H16
H261 1H26
H262 2H26
HO7 HO7