PDB Chemical Component 1OJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1OJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C34 |
C33 |
1.390 |
1.382 |
| C34 |
C35 |
1.389 |
1.383 |
| C33 |
C32 |
1.387 |
1.382 |
| C35 |
C36 |
1.389 |
1.383 |
| C25 |
C24 |
1.356 |
1.530 |
| O31 |
S29 |
1.430 |
1.421 |
| C32 |
C37 |
1.389 |
1.382 |
| C32 |
S29 |
1.767 |
1.762 |
| C36 |
C37 |
1.389 |
1.382 |
| C36 |
S38 |
1.772 |
1.762 |
| N41 |
S38 |
1.603 |
1.656 |
| C24 |
O23 |
1.437 |
1.428 |
| O14 |
C13 |
1.225 |
1.212 |
| O40 |
S38 |
1.434 |
1.421 |
| S29 |
O30 |
1.431 |
1.421 |
| S29 |
N15 |
1.632 |
1.656 |
| S38 |
O39 |
1.434 |
1.421 |
| O23 |
C18 |
1.375 |
1.360 |
| C13 |
N15 |
1.369 |
1.348 |
| C13 |
C12 |
1.479 |
1.507 |
| C17 |
C18 |
1.383 |
1.386 |
| C17 |
C16 |
1.391 |
1.382 |
| C18 |
C19 |
1.419 |
1.392 |
| N11 |
C12 |
1.456 |
1.465 |
| N11 |
C9 |
1.390 |
1.394 |
| C12 |
C16 |
1.522 |
1.507 |
| C16 |
C21 |
1.389 |
1.383 |
| O22 |
C19 |
1.381 |
1.360 |
| O22 |
C26 |
1.469 |
1.429 |
| C19 |
C20 |
1.394 |
1.386 |
| C9 |
C10 |
1.378 |
1.380 |
| C9 |
C8 |
1.395 |
1.401 |
| C10 |
C5 |
1.416 |
1.401 |
| C21 |
C20 |
1.385 |
1.383 |
| C28 |
C26 |
1.497 |
1.530 |
| C26 |
C27 |
1.507 |
1.530 |
| C8 |
C7 |
1.356 |
1.359 |
| C5 |
C6 |
1.401 |
1.408 |
| C5 |
C4 |
1.414 |
1.420 |
| C6 |
C1 |
1.362 |
1.362 |
| C7 |
C4 |
1.403 |
1.404 |
| C4 |
C3 |
1.411 |
1.403 |
| C1 |
N2 |
1.338 |
1.325 |
| C3 |
N2 |
1.323 |
1.313 |
| C17 |
H1 |
1.080 |
1.080 |
| C20 |
H2 |
1.080 |
1.080 |
| C21 |
H3 |
1.080 |
1.080 |
| C24 |
H4 |
1.100 |
1.091 |
| C24 |
H5 |
1.101 |
1.090 |
| C12 |
H6 |
1.100 |
1.090 |
| C34 |
H7 |
1.080 |
1.080 |
| C27 |
H8 |
1.100 |
1.090 |
| C27 |
H9 |
1.100 |
1.090 |
| C27 |
H10 |
1.100 |
1.090 |
| C33 |
H11 |
1.080 |
1.080 |
| C1 |
H12 |
1.080 |
1.080 |
| C3 |
H13 |
1.080 |
1.080 |
| C6 |
H14 |
1.080 |
1.080 |
| C7 |
H15 |
1.080 |
1.080 |
| C8 |
H16 |
1.080 |
1.080 |
| C10 |
H17 |
1.080 |
1.080 |
| N11 |
H18 |
1.000 |
0.970 |
| N15 |
H19 |
1.000 |
0.971 |
| C25 |
H20 |
1.100 |
1.089 |
| C25 |
H21 |
1.100 |
1.091 |
| C25 |
H22 |
1.100 |
1.090 |
| C26 |
H23 |
1.100 |
1.091 |
| C28 |
H24 |
1.100 |
1.090 |
| C28 |
H25 |
1.100 |
1.091 |
| C28 |
H26 |
1.100 |
1.090 |
| C35 |
H27 |
1.079 |
1.080 |
| C37 |
H28 |
1.080 |
1.081 |
| N41 |
H29 |
1.000 |
0.970 |
| N41 |
H30 |
1.000 |
0.970 |
Bond Angles for 1OJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C33 |
C34 |
C35 |
121.1 |
120.0 |
| C34 |
C33 |
C32 |
119.1 |
120.0 |
| C33 |
C34 |
H7 |
119.5 |
120.0 |
| C34 |
C33 |
H11 |
120.4 |
120.0 |
| C34 |
C35 |
C36 |
119.2 |
120.0 |
| C35 |
C34 |
H7 |
119.5 |
120.0 |
| C34 |
C35 |
H27 |
120.4 |
120.0 |
| C33 |
C32 |
C37 |
120.5 |
120.0 |
| C33 |
C32 |
S29 |
120.2 |
120.0 |
| C32 |
C33 |
H11 |
120.5 |
120.0 |
| C35 |
C36 |
C37 |
120.4 |
120.0 |
| C35 |
C36 |
S38 |
119.5 |
120.0 |
| C36 |
C35 |
H27 |
120.4 |
120.0 |
| C25 |
C24 |
H4 |
109.8 |
109.5 |
| C25 |
C24 |
H5 |
109.8 |
109.5 |
| C32 |
C37 |
C36 |
119.8 |
120.0 |
| C32 |
C37 |
H28 |
120.1 |
120.0 |
| C37 |
C36 |
S38 |
120.1 |
120.0 |
| C36 |
C37 |
H28 |
120.1 |
120.0 |
| C36 |
S38 |
O39 |
107.8 |
106.4 |
| O23 |
C24 |
H4 |
109.8 |
109.5 |
| O23 |
C24 |
H5 |
109.8 |
109.5 |
| O14 |
C13 |
N15 |
124.4 |
120.0 |
| S29 |
N15 |
H19 |
118.5 |
120.0 |
| C12 |
C13 |
N15 |
112.9 |
120.0 |
| C13 |
N15 |
H19 |
118.5 |
120.0 |
| C13 |
C12 |
C16 |
97.7 |
109.5 |
| C13 |
C12 |
H6 |
109.4 |
109.5 |
| C17 |
C18 |
C19 |
119.6 |
119.8 |
| C17 |
C16 |
C21 |
119.3 |
120.2 |
| C16 |
C17 |
H1 |
119.7 |
120.1 |
| C18 |
C19 |
C20 |
119.4 |
119.8 |
| N11 |
C12 |
H6 |
109.8 |
109.5 |
| C16 |
C21 |
C20 |
121.2 |
120.1 |
| C16 |
C21 |
H3 |
119.4 |
119.9 |
| O22 |
C26 |
H23 |
107.1 |
109.4 |
| C19 |
C20 |
H2 |
120.2 |
120.0 |
| C9 |
C10 |
H17 |
119.9 |
120.3 |
| C9 |
C8 |
H16 |
119.5 |
119.4 |
| C21 |
C20 |
H2 |
120.1 |
120.0 |
| C28 |
C26 |
H23 |
106.7 |
109.5 |
| C26 |
C27 |
H8 |
109.5 |
109.5 |
| C26 |
C27 |
H9 |
109.5 |
109.5 |
| C26 |
C27 |
H10 |
109.5 |
109.5 |
| C8 |
C7 |
H15 |
119.6 |
120.1 |
| C5 |
C6 |
H14 |
120.4 |
120.7 |
| C6 |
C1 |
H12 |
117.8 |
119.1 |
| C4 |
C3 |
H13 |
118.1 |
120.0 |
| N2 |
C1 |
H12 |
117.8 |
119.1 |
| H4 |
C24 |
H5 |
109.5 |
109.4 |
| H8 |
C27 |
H9 |
109.4 |
109.4 |
| H8 |
C27 |
H10 |
109.5 |
109.5 |
| H9 |
C27 |
H10 |
109.5 |
109.5 |
| H20 |
C25 |
H21 |
109.5 |
109.5 |
| H20 |
C25 |
H22 |
109.5 |
109.5 |
| H21 |
C25 |
H22 |
109.5 |
109.5 |
| H24 |
C28 |
H25 |
109.5 |
109.4 |
| H24 |
C28 |
H26 |
109.5 |
109.5 |
| H25 |
C28 |
H26 |
109.5 |
109.5 |
| H29 |
N41 |
H30 |
109.4 |
120.0 |
Torsion Angles for 1OJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C33 |
C34 |
C35 |
C36 |
0.5 |
359.9 |
| C35 |
C34 |
C33 |
H7 |
180.0 |
180.4 |
| C33 |
C34 |
C35 |
H27 |
180.5 |
179.9 |
| C34 |
C33 |
C32 |
C37 |
359.0 |
359.9 |
| C34 |
C33 |
C32 |
S29 |
174.5 |
180.0 |
| C32 |
C33 |
C34 |
H11 |
180.0 |
180.1 |
| C35 |
C34 |
C33 |
C32 |
0.5 |
0.1 |
| C33 |
C34 |
C35 |
H7 |
180.0 |
179.6 |
| C35 |
C34 |
C33 |
H11 |
180.5 |
180.0 |
| C34 |
C35 |
C36 |
C37 |
358.9 |
0.0 |
| C34 |
C35 |
C36 |
S38 |
176.2 |
180.0 |
| C36 |
C35 |
C34 |
H27 |
180.0 |
180.0 |
| C32 |
C33 |
C34 |
C35 |
0.5 |
0.1 |
| C32 |
C33 |
C34 |
H7 |
180.4 |
179.7 |
| C34 |
C33 |
C32 |
H11 |
180.0 |
179.9 |
| C33 |
C32 |
C37 |
C36 |
0.4 |
0.1 |
| C33 |
C32 |
C37 |
H28 |
180.5 |
180.0 |
| C36 |
C35 |
C34 |
H7 |
180.6 |
180.3 |
| C34 |
C35 |
C36 |
H27 |
180.0 |
180.0 |
| C32 |
C37 |
C36 |
C35 |
0.6 |
360.0 |
| C37 |
C36 |
C35 |
S38 |
182.7 |
180.0 |
| C35 |
C36 |
C37 |
H28 |
180.6 |
180.0 |
| C35 |
C36 |
S38 |
O39 |
181.5 |
203.6 |
| O23 |
C24 |
C25 |
H4 |
240.2 |
120.0 |
| O23 |
C24 |
C25 |
H5 |
119.8 |
239.9 |
| H4 |
C24 |
C25 |
H5 |
239.5 |
119.9 |
| C33 |
C32 |
S29 |
O31 |
358.3 |
203.5 |
| O31 |
S29 |
N15 |
H19 |
119.4 |
131.5 |
| C33 |
C32 |
C37 |
S29 |
175.5 |
180.1 |
| C37 |
C32 |
C33 |
H11 |
179.0 |
180.0 |
| C35 |
C36 |
C37 |
C32 |
0.6 |
360.0 |
| C32 |
C37 |
C36 |
S38 |
183.3 |
180.0 |
| C36 |
C37 |
C32 |
H28 |
180.0 |
180.0 |
| C33 |
C32 |
S29 |
C37 |
184.5 |
179.9 |
| S29 |
C32 |
C33 |
H11 |
354.4 |
0.1 |
| C32 |
S29 |
N15 |
H19 |
234.2 |
245.0 |
| C35 |
C36 |
C37 |
S38 |
177.3 |
180.0 |
| C37 |
C36 |
C35 |
H27 |
178.9 |
180.0 |
| C32 |
C37 |
C36 |
H28 |
180.0 |
180.0 |
| C37 |
C36 |
S38 |
O39 |
358.8 |
23.6 |
| C35 |
C36 |
S38 |
C37 |
182.7 |
180.0 |
| S38 |
C36 |
C35 |
H27 |
356.2 |
360.0 |
| S38 |
C36 |
C37 |
H28 |
3.3 |
0.0 |
| C25 |
C24 |
O23 |
H4 |
119.8 |
240.0 |
| C25 |
C24 |
O23 |
H5 |
240.2 |
120.1 |
| H4 |
C24 |
O23 |
H5 |
120.5 |
240.1 |
| C12 |
C13 |
O14 |
N15 |
176.4 |
179.7 |
| O14 |
C13 |
N15 |
H19 |
180.3 |
179.7 |
| O14 |
C13 |
C12 |
H6 |
155.4 |
140.3 |
| C33 |
C32 |
S29 |
O30 |
130.6 |
336.4 |
| O30 |
S29 |
N15 |
H19 |
349.7 |
358.5 |
| C33 |
C32 |
S29 |
N15 |
246.5 |
90.0 |
| C13 |
N15 |
S29 |
H19 |
180.0 |
180.0 |
| S29 |
N15 |
C13 |
H19 |
180.0 |
180.0 |
| N15 |
C13 |
C12 |
C16 |
85.3 |
80.0 |
| N15 |
C13 |
C12 |
H6 |
332.1 |
320.0 |
| O14 |
C13 |
C12 |
N15 |
183.2 |
180.3 |
| C12 |
C13 |
N15 |
H19 |
3.6 |
0.0 |
| N11 |
C12 |
C13 |
H6 |
234.3 |
239.9 |
| C17 |
C18 |
C19 |
C20 |
356.8 |
360.0 |
| C13 |
C12 |
C16 |
C17 |
63.9 |
254.5 |
| C16 |
C17 |
C18 |
C19 |
1.1 |
0.0 |
| C17 |
C16 |
C21 |
C20 |
358.2 |
360.0 |
| C17 |
C16 |
C21 |
H3 |
178.2 |
180.0 |
| C18 |
C19 |
C20 |
H2 |
182.7 |
180.0 |
| N11 |
C12 |
C13 |
N15 |
206.4 |
199.9 |
| C13 |
C12 |
N11 |
H6 |
125.6 |
120.0 |
| C9 |
N11 |
C12 |
H6 |
40.8 |
37.6 |
| N11 |
C9 |
C10 |
H17 |
4.2 |
359.6 |
| N11 |
C9 |
C8 |
H16 |
356.8 |
0.2 |
| C16 |
C12 |
C13 |
N15 |
85.3 |
80.0 |
| C13 |
C12 |
C16 |
H6 |
246.4 |
240.0 |
| C12 |
C16 |
C17 |
H1 |
6.4 |
0.0 |
| C12 |
C16 |
C21 |
H3 |
353.0 |
360.0 |
| C13 |
C12 |
C16 |
C21 |
249.0 |
74.5 |
| C21 |
C16 |
C17 |
H1 |
181.4 |
180.0 |
| C16 |
C21 |
C20 |
H2 |
179.8 |
180.0 |
| O22 |
C19 |
C20 |
H2 |
11.3 |
0.0 |
| C28 |
C26 |
O22 |
H23 |
247.0 |
120.0 |
| O22 |
C26 |
C27 |
H8 |
180.0 |
60.0 |
| O22 |
C26 |
C27 |
H9 |
300.0 |
180.0 |
| O22 |
C26 |
C27 |
H10 |
60.0 |
300.0 |
| C16 |
C21 |
C20 |
C19 |
359.8 |
0.0 |
| C21 |
C20 |
C19 |
H2 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H16 |
179.3 |
179.8 |
| C9 |
C8 |
C7 |
H15 |
179.9 |
180.0 |
| C10 |
C5 |
C6 |
H14 |
2.9 |
359.5 |
| C16 |
C21 |
C20 |
H3 |
180.0 |
180.0 |
| C19 |
C20 |
C21 |
H2 |
180.0 |
180.0 |
| O22 |
C26 |
C28 |
H23 |
113.3 |
240.0 |
| C28 |
C26 |
C27 |
H8 |
57.4 |
180.0 |
| C28 |
C26 |
C27 |
H9 |
177.4 |
300.0 |
| C28 |
C26 |
C27 |
H10 |
297.4 |
60.0 |
| H8 |
C27 |
C26 |
H9 |
240.0 |
240.0 |
| H8 |
C27 |
C26 |
H10 |
120.0 |
120.0 |
| H9 |
C27 |
C26 |
H10 |
240.0 |
240.0 |
| C5 |
C6 |
C1 |
H12 |
178.4 |
179.8 |
| C5 |
C4 |
C3 |
H13 |
178.2 |
180.0 |
| N2 |
C1 |
C6 |
H12 |
180.0 |
179.7 |
| C7 |
C4 |
C3 |
H13 |
356.1 |
359.9 |
| C6 |
C1 |
N2 |
H12 |
180.0 |
180.3 |
| C3 |
N2 |
C1 |
H12 |
181.2 |
180.0 |
| H1 |
C17 |
C18 |
C19 |
181.1 |
180.0 |
| H1 |
C17 |
C16 |
C21 |
181.4 |
180.0 |
| C16 |
C21 |
H3 |
C20 |
180.0 |
180.0 |
| H3 |
C21 |
C20 |
H2 |
359.8 |
0.0 |
| C25 |
C24 |
H4 |
H5 |
120.7 |
240.1 |
| O23 |
C24 |
H4 |
H5 |
239.3 |
120.0 |
| C25 |
C24 |
H5 |
H4 |
239.3 |
119.9 |
| O23 |
C24 |
H5 |
H4 |
120.7 |
240.0 |
| H6 |
C12 |
C13 |
N15 |
332.1 |
320.0 |
| C13 |
C12 |
H6 |
C16 |
105.6 |
120.0 |
| C33 |
C34 |
H7 |
C35 |
180.0 |
180.4 |
| H7 |
C34 |
C33 |
C32 |
180.4 |
179.7 |
| H7 |
C34 |
C33 |
H11 |
0.5 |
359.6 |
| H7 |
C34 |
C35 |
C36 |
180.6 |
180.3 |
| H7 |
C34 |
C35 |
H27 |
0.6 |
0.4 |
| C26 |
C27 |
H8 |
H9 |
120.0 |
120.0 |
| C26 |
C27 |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
C27 |
H8 |
H10 |
120.0 |
120.0 |
| C26 |
C27 |
H9 |
H8 |
240.0 |
240.0 |
| C26 |
C27 |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
C27 |
H9 |
H10 |
240.0 |
240.0 |
| C26 |
C27 |
H10 |
H8 |
120.0 |
120.0 |
| C26 |
C27 |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
C27 |
H10 |
H9 |
120.0 |
119.9 |
| H11 |
C33 |
C34 |
C35 |
180.5 |
180.0 |
| C34 |
C33 |
H11 |
C32 |
180.0 |
180.1 |
| H11 |
C33 |
C34 |
H7 |
0.5 |
359.6 |
| H11 |
C33 |
C32 |
C37 |
179.0 |
180.0 |
| H11 |
C33 |
C32 |
S29 |
354.4 |
0.1 |
| H14 |
C6 |
C1 |
H12 |
358.4 |
0.2 |
| H16 |
C8 |
C7 |
H15 |
359.9 |
360.0 |
| H18 |
N11 |
C12 |
H6 |
161.2 |
217.7 |
| H20 |
C25 |
C24 |
H4 |
299.8 |
180.0 |
| H20 |
C25 |
C24 |
H5 |
60.2 |
60.1 |
| H21 |
C25 |
H20 |
H22 |
120.0 |
120.0 |
| H21 |
C25 |
C24 |
H4 |
59.8 |
299.9 |
| H21 |
C25 |
C24 |
H5 |
180.2 |
180.1 |
| H20 |
C25 |
H21 |
H22 |
240.0 |
239.9 |
| H22 |
C25 |
C24 |
H4 |
179.8 |
59.9 |
| H22 |
C25 |
C24 |
H5 |
300.2 |
300.0 |
| H20 |
C25 |
H22 |
H21 |
120.0 |
120.0 |
| H23 |
C26 |
C27 |
H8 |
300.7 |
300.0 |
| H23 |
C26 |
C27 |
H9 |
60.7 |
60.0 |
| H23 |
C26 |
C27 |
H10 |
180.7 |
180.0 |
| H24 |
C28 |
C26 |
H23 |
66.7 |
60.0 |
| H25 |
C28 |
H24 |
H26 |
120.0 |
120.0 |
| H25 |
C28 |
C26 |
H23 |
186.7 |
180.0 |
| H24 |
C28 |
H25 |
H26 |
240.0 |
240.0 |
| H26 |
C28 |
C26 |
H23 |
306.7 |
300.0 |
| H24 |
C28 |
H26 |
H25 |
120.0 |
120.0 |
| C34 |
C35 |
H27 |
C36 |
180.0 |
180.0 |
| H27 |
C35 |
C34 |
H7 |
0.6 |
0.4 |
| H27 |
C35 |
C36 |
C37 |
178.9 |
180.0 |
| H27 |
C35 |
C36 |
S38 |
356.2 |
360.0 |
| C32 |
C37 |
H28 |
C36 |
180.0 |
180.0 |
| H28 |
C37 |
C36 |
S38 |
3.3 |
0.0 |