PDB Chemical Component 1OD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1OD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C39 C38 1.389 1.385
C39 C40 1.396 1.378
C38 C37 1.384 1.385
C40 C35 1.391 1.398
C37 O41 1.361 1.359
C37 C36 1.384 1.391
C35 C36 1.387 1.399
C35 C33 1.512 1.475
C36 O42 1.361 1.358
O45 C5 1.360 1.360
C4 C5 1.391 1.385
C4 C3 1.392 1.385
O34 C33 1.224 1.216
C5 C6 1.373 1.391
C33 N32 1.342 1.348
C3 C2 1.390 1.378
N32 C31 1.456 1.465
O28 C25 1.365 1.360
C6 O44 1.360 1.358
C6 C1 1.386 1.399
C2 C1 1.390 1.397
C1 C7 1.498 1.478
C31 C30 1.534 1.529
C25 C24 1.389 1.384
C25 C26 1.388 1.391
O27 C26 1.362 1.358
C24 C23 1.389 1.385
C26 C21 1.389 1.400
C7 N11 1.257 1.297
C7 O8 1.444 1.349
C30 C29 1.536 1.529
C23 C22 1.388 1.378
C29 N14 1.475 1.465
C21 C22 1.393 1.398
C21 C19 1.508 1.475
N11 C10 1.457 1.477
O8 C9 1.428 1.443
N18 C19 1.334 1.348
N18 C17 1.453 1.464
C19 O20 1.223 1.216
N14 C12 1.346 1.348
N14 C15 1.469 1.465
C10 C9 1.535 1.548
C10 C12 1.510 1.507
C9 C43 1.524 1.530
C17 C16 1.528 1.530
C12 O13 1.219 1.212
C15 C16 1.532 1.530
C40 H1 1.080 1.079
C39 H2 1.080 1.080
C38 H3 1.080 1.079
O41 H4 0.950 0.967
O42 H5 0.950 0.967
N32 H6 1.000 0.970
C31 H7 1.101 1.090
C31 H8 1.100 1.090
C30 H9 1.100 1.090
C30 H10 1.100 1.091
C29 H11 1.100 1.090
C29 H12 1.100 1.090
C10 H13 1.100 1.090
C9 H14 1.100 1.090
C43 H15 1.100 1.090
C43 H16 1.101 1.090
C43 H17 1.100 1.090
O44 H18 0.950 0.967
O45 H19 0.950 0.966
C4 H20 1.080 1.079
C3 H21 1.080 1.080
C2 H22 1.080 1.080
C15 H23 1.100 1.090
C15 H24 1.100 1.090
C16 H25 1.099 1.090
C16 H26 1.101 1.089
C17 H27 1.100 1.090
C17 H28 1.100 1.090
N18 H29 1.000 0.970
O27 H30 0.950 0.966
O28 H31 0.950 0.967
C24 H32 1.080 1.079
C23 H33 1.080 1.080
C22 H34 1.080 1.080

Bond Angles for 1OD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C39 C38 C37 118.9 120.3
C38 C39 H2 119.6 119.9
C39 C38 H3 120.5 119.8
C39 C40 H1 119.9 120.0
C38 C37 O41 119.8 120.0
C38 C37 C36 120.5 120.0
C37 C38 H3 120.6 119.9
C40 C35 C36 118.7 119.7
O41 C37 C36 119.7 120.0
C37 O41 H4 109.5 114.0
C35 C36 C37 121.1 119.7
C37 C36 O42 118.9 120.1
C35 C36 O42 120.0 120.1
C35 C33 N32 118.9 120.0
C36 O42 H5 109.5 114.0
C4 C3 C2 119.7 120.3
C3 C4 H20 120.0 119.9
C4 C3 H21 120.2 119.8
O34 C33 N32 121.9 120.0
C33 N32 C31 124.2 120.0
C33 N32 H6 117.9 120.0
C2 C3 H21 120.2 119.9
C3 C2 H22 120.1 120.0
N32 C31 C30 112.1 109.5
C31 N32 H6 117.9 120.0
N32 C31 H7 108.8 109.5
N32 C31 H8 108.8 109.5
O28 C25 C24 118.9 120.0
C6 O44 H18 109.5 114.0
C31 C30 C29 113.0 109.5
C30 C31 H7 108.8 109.5
C30 C31 H8 108.8 109.5
C31 C30 H9 108.6 109.5
C31 C30 H10 108.6 109.5
C25 C24 C23 119.8 120.3
C25 C24 H32 120.1 119.8
C24 C23 C22 119.8 120.3
C23 C24 H32 120.1 119.8
C24 C23 H33 120.1 119.9
C26 C21 C22 119.3 119.7
C30 C29 N14 113.1 109.5
C29 C30 H9 108.6 109.5
C29 C30 H10 108.6 109.4
C30 C29 H11 108.5 109.5
C30 C29 H12 108.5 109.4
C21 C22 C23 120.6 120.0
C22 C23 H33 120.1 119.8
C23 C22 H34 119.7 120.0
C29 N14 C12 124.5 120.0
C29 N14 C15 117.7 120.0
N14 C29 H11 108.5 109.5
N14 C29 H12 108.5 109.4
C21 C22 H34 119.7 120.1
N11 C10 H13 108.9 110.9
O8 C9 H14 110.4 111.0
N18 C19 O20 121.0 120.0
C19 N18 H29 118.7 120.0
N18 C17 H27 109.0 109.5
N18 C17 H28 109.0 109.5
C12 N14 C15 117.8 120.0
N14 C12 O13 120.1 120.0
N14 C15 C16 108.6 109.5
N14 C15 H23 109.7 109.5
N14 C15 H24 109.6 109.5
C10 C9 C43 112.7 111.1
C9 C10 H13 107.9 110.9
C10 C9 H14 109.0 111.0
C43 C9 H14 109.1 110.9
C9 C43 H15 109.5 109.5
C9 C43 H16 109.5 109.5
C9 C43 H17 109.5 109.5
C17 C16 H25 108.7 109.5
C17 C16 H26 108.7 109.5
C16 C15 H23 109.7 109.5
C16 C15 H24 109.7 109.5
C15 C16 H25 108.7 109.4
C15 C16 H26 108.7 109.4
H7 C31 H8 109.5 109.4
H9 C30 H10 109.5 109.4
H11 C29 H12 109.5 109.5
H15 C43 H16 109.5 109.5
H15 C43 H17 109.5 109.4
H16 C43 H17 109.5 109.4
H23 C15 H24 109.5 109.4
H25 C16 H26 109.4 109.5
H27 C17 H28 109.5 109.5

Torsion Angles for 1OD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C38 C39 C40 H1 180.2 180.1
C39 C38 C37 O41 180.4 180.0
C39 C38 C37 C36 0.1 359.9
C37 C38 C39 H3 180.0 180.1
C39 C40 C35 C36 359.7 360.0
C37 C38 C39 H2 179.9 180.0
C39 C38 C37 H3 180.0 179.9
O41 C37 C38 C36 180.3 180.1
C38 C37 O41 H4 180.0 89.9
C35 C36 C37 C38 359.8 0.1
C38 C37 C36 O42 179.9 180.3
C40 C35 C36 C37 0.3 360.0
C40 C35 C36 O42 180.2 179.8
C40 C35 C33 N32 148.6 0.5
C38 C37 O41 C36 179.7 179.9
O41 C37 C38 H3 0.4 0.1
C35 C36 C37 O41 179.5 180.0
O41 C37 C36 O42 359.6 0.2
C38 C37 C36 O41 180.3 180.1
C36 C37 C38 H3 180.2 180.0
C36 C37 O41 H4 0.3 270.0
C35 C36 C37 O42 179.9 179.8
C37 C36 O42 H5 180.0 269.8
C38 C37 C36 C35 359.8 0.1
O41 C37 C36 C35 179.5 180.0
C37 C36 C35 O42 180.1 180.2
C36 C35 C33 N32 329.9 180.3
C35 C36 O42 H5 0.1 90.0
O34 C33 C35 N32 182.1 179.7
C35 C33 N32 C31 183.5 179.7
C35 C33 N32 H6 3.5 359.7
C35 C36 O42 C37 180.1 180.2
C2 C3 C4 H21 180.0 179.7
C4 C3 C2 H22 179.9 180.0
C35 C33 O34 N32 177.8 180.3
O34 C33 N32 C31 1.4 0.0
O34 C33 N32 H6 181.4 180.0
C5 C6 O44 H18 180.0 270.1
C33 N32 C31 C30 147.4 180.0
C31 N32 C33 H6 180.0 180.0
C33 N32 C31 H7 267.8 300.0
C33 N32 C31 H8 27.0 59.9
C2 C3 C4 H20 180.3 179.8
C4 C3 C2 H21 180.0 180.3
C33 N32 C31 H6 180.0 180.0
N32 C31 C30 C29 81.8 180.0
C30 C31 N32 H7 239.6 240.0
C30 C31 N32 H8 120.4 120.0
N32 C31 C30 H9 202.3 300.0
N32 C31 C30 H10 321.3 60.0
H7 C31 N32 H8 240.8 240.1
O28 C25 C24 C23 180.5 180.0
O28 C25 C24 H32 0.4 359.9
C30 C31 N32 H6 327.4 360.0
N32 C31 C30 H7 120.4 120.0
N32 C31 C30 H8 239.6 240.0
C31 C30 C29 N14 164.9 179.5
C29 C30 C31 H9 239.4 240.0
C29 C30 C31 H10 120.5 120.0
C31 C30 C29 H11 285.4 299.6
C31 C30 C29 H12 44.4 59.6
H7 C31 C30 H8 119.2 119.9
H9 C30 C31 H10 241.1 240.0
C25 C24 C23 C22 359.8 360.0
C23 C24 C25 H32 180.0 180.0
C25 C24 C23 H33 179.8 179.9
C25 C26 C21 C22 359.2 360.0
O27 C26 C21 C22 179.8 180.0
C25 C24 C23 H32 180.0 180.0
C21 C22 C23 C24 0.2 360.0
C22 C23 C24 H33 180.0 180.0
C24 C23 C22 H34 180.2 180.3
C26 C21 C22 C23 0.3 0.0
C26 C21 C22 H34 180.3 179.7
C7 N11 C10 H13 253.1 256.9
C7 O8 C9 H14 250.9 266.9
C29 C30 C31 H7 321.3 60.0
C29 C30 C31 H8 202.1 300.0
C31 C30 C29 H9 120.5 120.1
C31 C30 C29 H10 239.5 240.0
C30 C29 N14 C12 199.6 84.2
C30 C29 N14 C15 20.1 264.2
N14 C29 C30 H11 239.5 240.0
N14 C29 C30 H12 120.5 120.0
H9 C30 C29 H10 119.0 119.9
H11 C29 C30 H12 241.0 240.0
C22 C23 C24 H32 179.8 180.0
C24 C23 C22 H33 180.0 180.0
C21 C22 C23 H34 180.0 179.7
N14 C29 C30 H9 44.4 59.5
N14 C29 C30 H10 285.4 299.5
C30 C29 N14 H11 120.5 120.1
C30 C29 N14 H12 239.5 240.0
C12 N14 C29 C15 179.5 179.9
C29 N14 C12 O13 180.5 5.0
C29 N14 C15 C16 109.0 89.7
C29 N14 C15 H23 228.9 209.8
C29 N14 C15 H24 349.2 329.7
H11 C29 N14 H12 119.0 120.0
C24 C23 C22 C21 0.2 360.0
C21 C22 C23 H33 180.2 180.0
C23 C22 C21 H34 180.0 180.3
C21 C19 N18 H29 3.5 359.9
C9 C10 N11 H13 113.8 118.2
N11 C10 C9 H14 109.6 94.5
O8 C9 C10 H13 104.7 94.7
C10 C9 O8 H14 118.4 118.0
C43 C9 O8 H14 240.3 236.1
O8 C9 C43 H15 180.0 300.4
O8 C9 C43 H16 300.0 60.5
O8 C9 C43 H17 60.0 180.5
C19 N18 C17 H27 231.2 60.0
C19 N18 C17 H28 350.6 300.0
N18 C17 C16 H25 216.0 60.0
N18 C17 C16 H26 335.0 300.0
H27 C17 N18 H28 240.6 120.0
O20 C19 N18 H29 179.8 180.0
C29 N14 C12 C15 180.5 180.1
C12 N14 C29 H11 79.1 324.1
C12 N14 C29 H12 320.1 204.1
C12 N14 C15 C16 289.5 269.8
C12 N14 C15 H23 49.3 29.9
C12 N14 C15 H24 169.6 149.8
C29 N14 C15 C12 179.6 179.9
C15 N14 C29 H11 259.6 144.2
C15 N14 C29 H12 140.6 24.2
C15 N14 C12 O13 0.0 184.9
C16 C15 N14 H23 240.1 239.9
C16 C15 N14 H24 119.9 120.0
N14 C15 C16 H25 150.7 300.0
N14 C15 C16 H26 31.6 60.0
H23 C15 N14 H24 239.7 240.1
N11 C10 C9 H13 245.5 241.8
O8 C9 C10 H14 240.6 242.0
C43 C9 C10 H14 121.3 123.9
C10 C9 C43 H15 298.2 52.5
C10 C9 C43 H16 58.3 172.5
C10 C9 C43 H17 178.2 292.5
C10 C12 N14 C15 177.6 4.9
O8 C9 C43 H14 120.5 124.0
C43 C9 C10 H13 345.4 336.6
C10 C9 C43 H14 238.7 236.0
H15 C43 C9 H16 240.0 239.9
H15 C43 C9 H17 120.0 120.0
H16 C43 C9 H17 240.0 240.0
C17 C16 C15 H23 151.3 59.9
C17 C16 C15 H24 31.0 300.1
C15 C16 C17 H25 239.5 120.0
C15 C16 C17 H26 120.5 240.0
H25 C16 C17 H26 240.9 120.0
O13 C12 N14 C15 0.0 184.9
N14 C15 C16 H23 119.9 120.1
N14 C15 C16 H24 240.2 239.9
C17 C16 C15 H25 120.5 240.0
C17 C16 C15 H26 239.5 120.1
H23 C15 C16 H24 120.3 119.9
H25 C16 C15 H26 119.1 240.1
H1 C40 C35 C36 179.7 179.9
H2 C39 C38 C37 179.9 180.0
H2 C39 C38 H3 359.8 359.9
H2 C39 C40 H1 0.2 0.1
C39 C38 H3 C37 180.0 180.1
H3 C38 C39 H2 359.8 359.9
H3 C38 C37 O41 0.4 0.1
H3 C38 C37 C36 180.2 180.0
H4 O41 C37 C36 0.3 270.0
C33 N32 H6 C31 180.0 180.0
H6 N32 C31 C30 327.4 360.0
H6 N32 C31 H7 87.8 120.0
H6 N32 C31 H8 207.0 239.9
N32 C31 H7 C30 237.6 240.0
H7 C31 N32 H6 87.8 120.0
N32 C31 H7 H8 118.8 119.9
H7 C31 C30 C29 321.3 60.0
C30 C31 H7 H8 241.2 240.0
H7 C31 C30 H9 81.9 180.0
H7 C31 C30 H10 200.8 300.0
N32 C31 H8 C30 122.4 120.0
H8 C31 N32 H6 207.0 239.9
N32 C31 H8 H7 241.2 240.0
H8 C31 C30 C29 202.1 300.0
C30 C31 H8 H7 118.8 120.0
H8 C31 C30 H9 322.7 60.1
H8 C31 C30 H10 81.6 180.0
C31 C30 H9 C29 236.8 239.9
H9 C30 C31 H7 81.9 180.0
H9 C30 C31 H8 322.7 60.1
C31 C30 H9 H10 118.4 120.0
H9 C30 C29 N14 44.4 59.5
C29 C30 H9 H10 241.6 240.1
H9 C30 C29 H11 164.9 179.5
H9 C30 C29 H12 283.8 299.5
C31 C30 H10 C29 123.2 120.0
H10 C30 C31 H7 200.8 300.0
H10 C30 C31 H8 81.6 180.0
C31 C30 H10 H9 241.6 240.0
H10 C30 C29 N14 285.4 299.5
C29 C30 H10 H9 118.4 120.0
H10 C30 C29 H11 45.9 59.6
H10 C30 C29 H12 164.9 179.6
C30 C29 H11 N14 236.7 239.9
H11 C29 C30 H9 164.9 179.5
H11 C29 C30 H10 45.9 59.6
C30 C29 H11 H12 118.3 120.0
H11 C29 N14 C12 79.1 324.1
H11 C29 N14 C15 259.6 144.2
N14 C29 H11 H12 241.7 240.0
C30 C29 H12 N14 123.3 120.0
H12 C29 C30 H9 283.8 299.5
H12 C29 C30 H10 164.9 179.6
C30 C29 H12 H11 241.6 240.0
H12 C29 N14 C12 320.1 204.1
H12 C29 N14 C15 140.6 24.2
N14 C29 H12 H11 118.3 120.0
H13 C10 C9 C43 345.4 336.6
H13 C10 C9 H14 224.1 212.7
C10 C9 H14 C43 123.5 124.0
H14 C9 C10 H13 224.1 212.7
H14 C9 C43 H15 59.5 176.5
H14 C9 C43 H16 179.5 296.5
H14 C9 C43 H17 299.5 56.5
H15 C43 C9 H14 59.5 176.5
C9 C43 H15 H16 120.0 120.1
C9 C43 H15 H17 240.0 240.0
H16 C43 H15 H17 120.0 119.9
H16 C43 C9 H14 179.5 296.5
C9 C43 H16 H15 240.0 239.9
C9 C43 H16 H17 120.0 120.0
H15 C43 H16 H17 240.0 240.1
H17 C43 C9 H14 299.5 56.5
C9 C43 H17 H15 120.0 120.0
C9 C43 H17 H16 240.0 240.0
H15 C43 H17 H16 120.0 120.0
H20 C4 C3 C2 180.3 179.8
H20 C4 C3 H21 0.3 0.1
C4 C3 H21 C2 180.0 179.7
H21 C3 C4 H20 0.3 0.1
H21 C3 C2 H22 359.9 359.7
H22 C2 C3 H21 359.9 359.7
N14 C15 H23 C16 240.8 239.9
N14 C15 H23 H24 120.3 120.0
C16 C15 H23 H24 239.6 240.1
H23 C15 C16 H25 30.8 180.0
H23 C15 C16 H26 271.7 299.9
N14 C15 H24 C16 119.2 120.1
N14 C15 H24 H23 239.6 240.0
C16 C15 H24 H23 120.4 119.9
H24 C15 C16 H25 270.5 60.1
H24 C15 C16 H26 151.4 180.0
C17 C16 H25 H26 118.6 239.9
H25 C16 C15 H23 30.8 180.0
H25 C16 C15 H24 270.5 60.1
C15 C16 H25 H26 241.4 119.9
C17 C16 H26 H25 241.4 120.1
H26 C16 C15 H23 271.7 299.9
H26 C16 C15 H24 151.4 180.0
C15 C16 H26 H25 118.6 240.1
N18 C17 H27 H28 119.1 240.0
H27 C17 C16 H25 95.7 180.0
H27 C17 C16 H26 214.7 60.0
N18 C17 H28 H27 240.9 120.0
H28 C17 C16 H25 336.3 300.0
H28 C17 C16 H26 95.3 179.9
H29 N18 C19 O20 179.8 180.0
H29 N18 C17 H27 51.2 240.1
H29 N18 C17 H28 170.6 120.0
H31 O28 C25 C24 180.0 90.1
C25 C24 H32 C23 180.0 180.0
H32 C24 C23 C22 179.8 180.0
H32 C24 C23 H33 359.8 360.0
C24 C23 H33 C22 180.0 180.0
H33 C23 C24 H32 359.8 360.0
H33 C23 C22 H34 0.2 0.4
C21 C22 H34 C23 180.0 180.3
H34 C22 C23 H33 0.2 0.4