PDB Chemical Component 1NL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1NL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
O7 |
1.435 |
1.430 |
| C6 |
C5 |
1.541 |
1.530 |
| C4 |
C2 |
1.544 |
1.530 |
| O18 |
C17 |
1.229 |
1.215 |
| C3 |
C2 |
1.539 |
1.529 |
| C5 |
C2 |
1.546 |
1.531 |
| C5 |
N8 |
1.467 |
1.466 |
| C2 |
C1 |
1.539 |
1.530 |
| C22 |
C21 |
1.400 |
1.380 |
| C22 |
C23 |
1.406 |
1.394 |
| N8 |
C9 |
1.344 |
1.348 |
| C21 |
C20 |
1.409 |
1.400 |
| C17 |
C15 |
1.495 |
1.475 |
| C17 |
O19 |
1.313 |
1.347 |
| O38 |
C23 |
1.334 |
1.356 |
| O38 |
C39 |
1.463 |
1.429 |
| C23 |
N24 |
1.360 |
1.320 |
| C15 |
C16 |
1.404 |
1.392 |
| C15 |
C14 |
1.402 |
1.410 |
| C16 |
C11 |
1.411 |
1.394 |
| C20 |
C14 |
1.502 |
1.479 |
| C20 |
C25 |
1.394 |
1.404 |
| C9 |
C11 |
1.496 |
1.478 |
| C9 |
O10 |
1.220 |
1.216 |
| C14 |
C13 |
1.405 |
1.394 |
| C11 |
C12 |
1.403 |
1.398 |
| C13 |
C12 |
1.402 |
1.377 |
| N24 |
C25 |
1.351 |
1.326 |
| C25 |
C26 |
1.481 |
1.480 |
| C26 |
N28 |
1.343 |
1.348 |
| C26 |
O27 |
1.230 |
1.215 |
| N28 |
C29 |
1.343 |
1.398 |
| C30 |
C29 |
1.401 |
1.390 |
| C30 |
C31 |
1.398 |
1.382 |
| C29 |
C34 |
1.421 |
1.387 |
| C31 |
C32 |
1.396 |
1.380 |
| C34 |
C33 |
1.405 |
1.394 |
| C32 |
C33 |
1.401 |
1.396 |
| C33 |
C35 |
1.505 |
1.478 |
| C35 |
O36 |
1.226 |
1.216 |
| C35 |
N37 |
1.340 |
1.348 |
| C1 |
H1 |
1.100 |
1.089 |
| C1 |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C3 |
H4 |
1.100 |
1.090 |
| C3 |
H5 |
1.100 |
1.091 |
| C3 |
H6 |
1.100 |
1.090 |
| C4 |
H7 |
1.100 |
1.090 |
| C4 |
H8 |
1.100 |
1.090 |
| C4 |
H9 |
1.100 |
1.090 |
| C5 |
H10 |
1.100 |
1.090 |
| C6 |
H11 |
1.100 |
1.090 |
| C6 |
H12 |
1.100 |
1.090 |
| O7 |
H13 |
0.950 |
0.967 |
| N8 |
H14 |
1.000 |
0.970 |
| C12 |
H15 |
1.080 |
1.080 |
| C13 |
H16 |
1.080 |
1.080 |
| C16 |
H17 |
1.080 |
1.080 |
| O19 |
H18 |
0.950 |
0.966 |
| C21 |
H19 |
1.080 |
1.081 |
| C22 |
H20 |
1.080 |
1.080 |
| N28 |
H21 |
1.000 |
0.970 |
| C30 |
H22 |
1.080 |
1.081 |
| C31 |
H23 |
1.080 |
1.080 |
| C32 |
H24 |
1.080 |
1.080 |
| C34 |
H25 |
1.080 |
1.080 |
| N37 |
H26 |
1.000 |
0.970 |
| N37 |
H27 |
1.000 |
0.969 |
| C39 |
H28 |
1.100 |
1.090 |
| C39 |
H29 |
1.100 |
1.090 |
| C39 |
H30 |
1.100 |
1.090 |
Bond Angles for 1NL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O7 |
C6 |
H11 |
109.4 |
109.5 |
| O7 |
C6 |
H12 |
109.4 |
109.5 |
| C6 |
O7 |
H13 |
109.5 |
114.0 |
| C6 |
C5 |
N8 |
113.3 |
109.4 |
| C6 |
C5 |
H10 |
102.3 |
109.5 |
| O18 |
C17 |
O19 |
118.1 |
120.0 |
| C5 |
N8 |
C9 |
130.9 |
120.0 |
| N8 |
C5 |
H10 |
102.9 |
109.5 |
| C5 |
N8 |
H14 |
114.6 |
120.0 |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H2 |
109.5 |
109.5 |
| C2 |
C1 |
H3 |
109.5 |
109.4 |
| C22 |
C21 |
H19 |
119.0 |
120.7 |
| C22 |
C23 |
N24 |
120.3 |
121.1 |
| C23 |
C22 |
H20 |
121.3 |
120.3 |
| N8 |
C9 |
C11 |
117.1 |
120.0 |
| N8 |
C9 |
O10 |
123.8 |
120.0 |
| C9 |
N8 |
H14 |
114.5 |
120.0 |
| C21 |
C20 |
C25 |
116.7 |
118.9 |
| C17 |
O19 |
H18 |
109.5 |
117.0 |
| O38 |
C39 |
H28 |
109.5 |
109.5 |
| O38 |
C39 |
H29 |
109.5 |
109.5 |
| O38 |
C39 |
H30 |
109.5 |
109.5 |
| C23 |
N24 |
C25 |
121.8 |
121.7 |
| C15 |
C16 |
H17 |
120.2 |
120.1 |
| C20 |
C25 |
N24 |
121.5 |
120.5 |
| C20 |
C25 |
C26 |
127.0 |
119.8 |
| O10 |
C9 |
C11 |
119.0 |
120.0 |
| C9 |
C11 |
C12 |
124.2 |
119.9 |
| C14 |
C13 |
H16 |
119.9 |
119.9 |
| C11 |
C12 |
H15 |
119.2 |
119.9 |
| C13 |
C12 |
H15 |
119.2 |
119.9 |
| N24 |
C25 |
C26 |
111.4 |
119.8 |
| C25 |
C26 |
N28 |
129.0 |
120.0 |
| C25 |
C26 |
O27 |
113.7 |
120.0 |
| O27 |
C26 |
N28 |
117.2 |
120.0 |
| C26 |
N28 |
C29 |
136.8 |
120.0 |
| C26 |
N28 |
H21 |
111.6 |
120.0 |
| N28 |
C29 |
C34 |
117.6 |
120.1 |
| C29 |
N28 |
H21 |
111.6 |
120.0 |
| C30 |
C29 |
C34 |
117.4 |
119.9 |
| C30 |
C31 |
C32 |
120.3 |
120.2 |
| C31 |
C30 |
H22 |
119.1 |
119.8 |
| C30 |
C31 |
H23 |
119.9 |
119.9 |
| C29 |
C34 |
C33 |
121.1 |
119.8 |
| C29 |
C34 |
H25 |
119.5 |
120.1 |
| C31 |
C32 |
C33 |
119.5 |
120.0 |
| C32 |
C31 |
H23 |
119.8 |
119.9 |
| C31 |
C32 |
H24 |
120.2 |
120.0 |
| C34 |
C33 |
C35 |
119.7 |
120.1 |
| C32 |
C33 |
C35 |
120.4 |
120.1 |
| C33 |
C32 |
H24 |
120.3 |
120.0 |
| C33 |
C35 |
O36 |
120.5 |
120.0 |
| C33 |
C35 |
N37 |
118.8 |
120.0 |
| O36 |
C35 |
N37 |
120.7 |
120.0 |
| C35 |
N37 |
H26 |
120.0 |
120.0 |
| C35 |
N37 |
H27 |
120.0 |
120.0 |
| H1 |
C1 |
H2 |
109.5 |
109.5 |
| H1 |
C1 |
H3 |
109.5 |
109.5 |
| H2 |
C1 |
H3 |
109.5 |
109.5 |
| H4 |
C3 |
H5 |
109.5 |
109.5 |
| H4 |
C3 |
H6 |
109.4 |
109.5 |
| H5 |
C3 |
H6 |
109.5 |
109.4 |
| H7 |
C4 |
H8 |
109.5 |
109.5 |
| H7 |
C4 |
H9 |
109.5 |
109.5 |
| H8 |
C4 |
H9 |
109.5 |
109.5 |
| H11 |
C6 |
H12 |
109.5 |
109.5 |
| H26 |
N37 |
H27 |
120.0 |
120.0 |
| H28 |
C39 |
H29 |
109.4 |
109.4 |
| H28 |
C39 |
H30 |
109.5 |
109.4 |
| H29 |
C39 |
H30 |
109.5 |
109.4 |
Torsion Angles for 1NL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O7 |
C6 |
C5 |
N8 |
44.6 |
297.3 |
| O7 |
C6 |
C5 |
H10 |
294.6 |
177.3 |
| H11 |
C6 |
O7 |
H12 |
240.1 |
120.0 |
| C6 |
C5 |
N8 |
C9 |
246.3 |
275.0 |
| N8 |
C5 |
C6 |
H10 |
110.0 |
120.0 |
| C6 |
C5 |
N8 |
H14 |
66.3 |
95.0 |
| C4 |
C2 |
C1 |
H1 |
180.0 |
192.8 |
| C4 |
C2 |
C1 |
H2 |
300.0 |
312.8 |
| C4 |
C2 |
C1 |
H3 |
60.0 |
72.8 |
| O18 |
C17 |
O19 |
H18 |
360.0 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
67.0 |
72.8 |
| C3 |
C2 |
C1 |
H2 |
187.0 |
192.8 |
| C3 |
C2 |
C1 |
H3 |
307.0 |
312.8 |
| C5 |
C2 |
C1 |
H1 |
303.5 |
312.7 |
| C5 |
C2 |
C1 |
H2 |
63.5 |
72.8 |
| C5 |
C2 |
C1 |
H3 |
183.5 |
192.8 |
| C6 |
C5 |
N8 |
H10 |
250.4 |
240.0 |
| C5 |
N8 |
C9 |
C11 |
183.0 |
180.0 |
| C5 |
N8 |
C9 |
O10 |
6.5 |
0.1 |
| C9 |
N8 |
C5 |
H14 |
180.0 |
179.9 |
| H1 |
C1 |
C2 |
H2 |
240.0 |
239.9 |
| H1 |
C1 |
C2 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
C2 |
H3 |
240.0 |
240.0 |
| C22 |
C21 |
C20 |
C25 |
4.7 |
0.2 |
| C23 |
C22 |
C21 |
H19 |
175.2 |
180.1 |
| C22 |
C23 |
N24 |
C25 |
0.0 |
359.7 |
| C9 |
N8 |
C5 |
H10 |
355.9 |
35.0 |
| C5 |
N8 |
C9 |
H14 |
180.0 |
180.1 |
| O10 |
C9 |
N8 |
C11 |
183.5 |
180.1 |
| N8 |
C9 |
C11 |
C12 |
226.6 |
0.0 |
| C21 |
C20 |
C25 |
N24 |
357.9 |
359.5 |
| C21 |
C20 |
C25 |
C26 |
178.2 |
179.8 |
| C17 |
C15 |
C16 |
H17 |
0.2 |
359.5 |
| O38 |
C23 |
C22 |
H20 |
3.3 |
0.0 |
| H28 |
C39 |
O38 |
H29 |
240.0 |
240.0 |
| H28 |
C39 |
O38 |
H30 |
120.0 |
120.0 |
| H29 |
C39 |
O38 |
H30 |
240.0 |
240.0 |
| N24 |
C23 |
C22 |
H20 |
182.4 |
180.0 |
| C20 |
C25 |
N24 |
C23 |
359.9 |
0.5 |
| C23 |
N24 |
C25 |
C26 |
179.6 |
180.3 |
| C15 |
C14 |
C13 |
H16 |
180.8 |
180.0 |
| C16 |
C11 |
C12 |
H15 |
182.2 |
180.3 |
| C20 |
C14 |
C13 |
H16 |
1.6 |
360.0 |
| C23 |
N24 |
C25 |
C20 |
359.9 |
0.5 |
| N24 |
C25 |
C20 |
C26 |
179.7 |
179.7 |
| C20 |
C25 |
C26 |
N28 |
214.5 |
180.0 |
| C20 |
C25 |
C26 |
O27 |
34.7 |
360.0 |
| N8 |
C9 |
C11 |
O10 |
183.3 |
180.1 |
| C11 |
C9 |
N8 |
H14 |
3.0 |
359.9 |
| C9 |
C11 |
C12 |
H15 |
357.0 |
0.0 |
| N8 |
C9 |
O10 |
C11 |
176.5 |
179.9 |
| O10 |
C9 |
N8 |
H14 |
186.5 |
180.0 |
| O10 |
C9 |
C11 |
C12 |
43.3 |
180.0 |
| C14 |
C13 |
C12 |
H15 |
178.3 |
180.0 |
| C13 |
C12 |
C11 |
H15 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
H15 |
180.0 |
180.0 |
| C20 |
C25 |
N24 |
C26 |
180.2 |
180.3 |
| N24 |
C25 |
C26 |
N28 |
34.8 |
0.3 |
| N24 |
C25 |
C26 |
O27 |
214.9 |
180.2 |
| C20 |
C25 |
C26 |
N24 |
179.7 |
179.7 |
| O27 |
C26 |
C25 |
N28 |
180.1 |
179.9 |
| C25 |
C26 |
N28 |
C29 |
183.5 |
175.2 |
| C25 |
C26 |
N28 |
H21 |
3.6 |
355.2 |
| C25 |
C26 |
N28 |
O27 |
180.1 |
179.9 |
| C26 |
N28 |
C29 |
C34 |
47.0 |
35.6 |
| C29 |
N28 |
C26 |
H21 |
180.0 |
180.1 |
| C25 |
C26 |
O27 |
N28 |
179.9 |
180.1 |
| O27 |
C26 |
N28 |
C29 |
3.4 |
355.3 |
| O27 |
C26 |
N28 |
H21 |
183.4 |
175.2 |
| C26 |
N28 |
C29 |
H21 |
180.0 |
179.9 |
| C30 |
C29 |
N28 |
C34 |
185.7 |
180.3 |
| N28 |
C29 |
C34 |
C33 |
181.9 |
179.7 |
| N28 |
C29 |
C34 |
H25 |
1.9 |
0.0 |
| N28 |
C29 |
C30 |
C34 |
174.4 |
179.7 |
| C30 |
C29 |
N28 |
H21 |
52.7 |
36.0 |
| C30 |
C29 |
C34 |
C33 |
356.7 |
359.4 |
| C30 |
C29 |
C34 |
H25 |
176.7 |
179.7 |
| C31 |
C30 |
C29 |
C34 |
3.0 |
0.3 |
| C30 |
C31 |
C32 |
C33 |
0.4 |
0.0 |
| C32 |
C31 |
C30 |
H23 |
180.0 |
180.0 |
| C30 |
C31 |
C32 |
H24 |
180.4 |
180.0 |
| C34 |
C29 |
N28 |
H21 |
227.0 |
215.7 |
| C29 |
C34 |
C33 |
C35 |
182.8 |
180.4 |
| C32 |
C31 |
C30 |
H22 |
178.4 |
180.0 |
| C30 |
C31 |
C32 |
H23 |
180.0 |
180.0 |
| C31 |
C32 |
C33 |
C35 |
178.7 |
179.9 |
| C33 |
C32 |
C31 |
H24 |
180.0 |
180.0 |
| C29 |
C34 |
C33 |
H25 |
180.0 |
180.3 |
| C32 |
C33 |
C34 |
C35 |
179.4 |
180.2 |
| C34 |
C33 |
C32 |
H24 |
179.3 |
179.8 |
| C34 |
C33 |
C35 |
O36 |
328.7 |
0.1 |
| C34 |
C33 |
C35 |
N37 |
148.9 |
180.3 |
| C29 |
C34 |
C33 |
C32 |
2.2 |
0.6 |
| C33 |
C32 |
C31 |
H23 |
180.4 |
180.0 |
| C31 |
C32 |
C33 |
H24 |
180.0 |
180.0 |
| C34 |
C33 |
C32 |
C35 |
180.6 |
179.8 |
| C32 |
C33 |
C35 |
O36 |
149.3 |
180.0 |
| C32 |
C33 |
C35 |
N37 |
329.5 |
0.1 |
| C35 |
C33 |
C32 |
H24 |
358.7 |
360.0 |
| O36 |
C35 |
C33 |
N37 |
179.9 |
179.9 |
| C33 |
C35 |
N37 |
H26 |
179.8 |
359.9 |
| C33 |
C35 |
N37 |
H27 |
359.9 |
180.0 |
| C33 |
C35 |
O36 |
N37 |
180.1 |
180.1 |
| O36 |
C35 |
N37 |
H26 |
360.0 |
180.0 |
| O36 |
C35 |
N37 |
H27 |
180.0 |
0.1 |
| C33 |
C35 |
N37 |
O36 |
179.9 |
179.9 |
| H26 |
N37 |
C35 |
H27 |
179.9 |
179.9 |
| C2 |
C1 |
H1 |
H2 |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C1 |
H1 |
H3 |
120.0 |
120.0 |
| C2 |
C1 |
H2 |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H2 |
H3 |
120.0 |
119.9 |
| H1 |
C1 |
H2 |
H3 |
240.0 |
240.0 |
| C2 |
C1 |
H3 |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
| H5 |
C3 |
H4 |
H6 |
120.0 |
119.9 |
| H4 |
C3 |
H5 |
H6 |
240.0 |
240.0 |
| H4 |
C3 |
H6 |
H5 |
120.0 |
120.0 |
| H8 |
C4 |
H7 |
H9 |
120.0 |
120.1 |
| H7 |
C4 |
H8 |
H9 |
240.0 |
239.9 |
| H7 |
C4 |
H9 |
H8 |
120.0 |
120.1 |
| C6 |
C5 |
H10 |
N8 |
117.7 |
120.0 |
| H10 |
C5 |
N8 |
C9 |
355.9 |
35.0 |
| H10 |
C5 |
N8 |
H14 |
175.9 |
215.1 |
| O7 |
C6 |
H11 |
H12 |
119.8 |
240.0 |
| H11 |
C6 |
O7 |
H13 |
300.0 |
60.0 |
| H11 |
C6 |
C5 |
N8 |
284.5 |
57.4 |
| H11 |
C6 |
C5 |
H10 |
174.5 |
297.4 |
| O7 |
C6 |
H12 |
H11 |
240.2 |
120.0 |
| H12 |
C6 |
O7 |
H13 |
59.9 |
300.0 |
| H12 |
C6 |
C5 |
N8 |
164.6 |
177.4 |
| H12 |
C6 |
C5 |
H10 |
54.6 |
57.4 |
| H13 |
O7 |
C6 |
H11 |
300.0 |
60.0 |
| H13 |
O7 |
C6 |
H12 |
59.9 |
300.0 |
| C5 |
N8 |
H14 |
C9 |
180.0 |
179.9 |
| H14 |
N8 |
C5 |
H10 |
175.9 |
215.1 |
| H14 |
N8 |
C9 |
C11 |
3.0 |
359.9 |
| H14 |
N8 |
C9 |
O10 |
186.5 |
180.0 |
| H16 |
C13 |
C12 |
H15 |
358.2 |
0.0 |
| H19 |
C21 |
C20 |
C25 |
184.7 |
180.2 |
| H20 |
C22 |
C21 |
H19 |
355.2 |
0.0 |
| H20 |
C22 |
C23 |
N24 |
182.4 |
180.0 |
| C26 |
N28 |
H21 |
C29 |
180.0 |
180.1 |
| H21 |
N28 |
C29 |
C34 |
227.0 |
215.7 |
| H22 |
C30 |
C29 |
C34 |
183.0 |
180.3 |
| H22 |
C30 |
C31 |
C32 |
178.4 |
180.0 |
| H22 |
C30 |
C31 |
H23 |
358.4 |
0.0 |
| C30 |
C31 |
H23 |
C32 |
180.0 |
180.0 |
| H23 |
C31 |
C30 |
H22 |
358.4 |
0.0 |
| H23 |
C31 |
C32 |
C33 |
180.4 |
180.0 |
| H23 |
C31 |
C32 |
H24 |
0.5 |
360.0 |
| C31 |
C32 |
H24 |
C33 |
180.0 |
180.0 |
| H24 |
C32 |
C31 |
H23 |
0.5 |
360.0 |
| H24 |
C32 |
C33 |
C35 |
358.7 |
360.0 |
| C29 |
C34 |
H25 |
C33 |
180.0 |
179.7 |
| H25 |
C34 |
C33 |
C35 |
2.8 |
0.0 |
| C35 |
N37 |
H26 |
H27 |
180.1 |
180.1 |
| C35 |
N37 |
H27 |
H26 |
179.9 |
179.9 |
| O38 |
C39 |
H28 |
H29 |
120.0 |
120.1 |
| O38 |
C39 |
H28 |
H30 |
240.0 |
239.9 |
| H29 |
C39 |
H28 |
H30 |
120.0 |
119.9 |
| O38 |
C39 |
H29 |
H28 |
240.0 |
240.0 |
| O38 |
C39 |
H29 |
H30 |
120.0 |
120.1 |
| H28 |
C39 |
H29 |
H30 |
240.0 |
240.1 |
| O38 |
C39 |
H30 |
H28 |
120.0 |
120.0 |
| O38 |
C39 |
H30 |
H29 |
240.0 |
239.9 |
| H28 |
C39 |
H30 |
H29 |
120.0 |
119.9 |