PDB Chemical Component 1NK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1NK

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O7 C6 1.435 1.429
C6 C5 1.544 1.529
C3 C2 1.541 1.530
O19 C17 1.323 1.214
C1 C2 1.541 1.531
C5 C2 1.555 1.530
C5 N8 1.479 1.466
C2 C4 1.536 1.530
C22 C21 1.399 1.381
C22 C23 1.407 1.394
N8 C9 1.357 1.348
C21 C20 1.410 1.401
C17 C15 1.498 1.476
C17 O18 1.227 1.347
O40 C23 1.342 1.356
O40 C41 1.466 1.429
C23 N24 1.373 1.320
C16 C15 1.399 1.392
C16 C11 1.405 1.393
C15 C14 1.413 1.409
C9 C11 1.502 1.477
C9 O10 1.222 1.215
C14 C20 1.507 1.479
C14 C13 1.404 1.394
C20 C25 1.407 1.404
C11 C12 1.410 1.399
C13 C12 1.409 1.377
N24 C25 1.370 1.326
C25 C26 1.496 1.479
C26 N28 1.359 1.348
C26 O27 1.216 1.215
N28 C29 1.365 1.397
C30 C29 1.408 1.398
C30 C31 1.401 1.361
C29 C34 1.414 1.381
C31 C32 1.404 1.403
C34 C33 1.410 1.399
C32 C33 1.415 1.418
C32 C38 1.411 1.412
C33 C35 1.401 1.411
N39 C38 1.345 1.385
C38 N37 1.361 1.320
C35 C36 1.403 1.359
N37 C36 1.364 1.328
C1 H1 1.100 1.089
C1 H2 1.100 1.090
C1 H3 1.100 1.090
C3 H4 1.100 1.090
C3 H5 1.100 1.090
C3 H6 1.100 1.089
C4 H7 1.100 1.090
C4 H8 1.100 1.089
C4 H9 1.100 1.090
C5 H10 1.100 1.091
C6 H11 1.100 1.090
C6 H12 1.100 1.090
O7 H13 0.950 0.968
N8 H14 1.000 0.969
C12 H15 1.080 1.080
C13 H16 1.080 1.080
C16 H17 1.080 1.079
O18 H18 0.950 0.968
C21 H19 1.080 1.080
C22 H20 1.080 1.079
N28 H21 1.000 0.970
C30 H22 1.080 1.081
C31 H23 1.080 1.080
C34 H24 1.080 1.080
C35 H25 1.080 1.080
C36 H26 1.081 1.080
N39 H27 1.000 0.971
N39 H28 1.000 0.970
C41 H29 1.100 1.090
C41 H30 1.099 1.090
C41 H31 1.100 1.090

Bond Angles for 1NK

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O7 C6 H11 108.4 109.4
O7 C6 H12 108.4 109.5
C6 C5 N8 108.1 109.5
C6 C5 H10 107.3 109.5
C3 C2 C4 107.1 109.5
C1 C2 C4 109.8 109.5
C2 C1 H1 109.5 109.5
C2 C1 H2 109.4 109.5
C2 C1 H3 109.5 109.5
C5 N8 C9 122.1 120.0
N8 C5 H10 108.1 109.4
C5 N8 H14 118.9 120.0
C2 C4 H7 109.5 109.5
C2 C4 H8 109.5 109.5
C2 C4 H9 109.5 109.4
C22 C21 H19 118.6 120.8
C22 C23 N24 120.9 121.1
C23 C22 H20 121.4 120.3
N8 C9 C11 116.2 120.0
N8 C9 O10 124.5 120.0
C9 N8 H14 119.0 120.0
C21 C20 C25 116.7 118.9
C17 O18 H18 109.5 117.0
O40 C41 H29 109.5 109.5
O40 C41 H30 109.5 109.5
O40 C41 H31 109.5 109.5
C23 N24 C25 121.0 121.7
C15 C14 C20 121.8 120.1
O10 C9 C11 119.3 120.0
C9 C11 C12 124.7 119.9
C14 C20 C25 127.7 120.5
C14 C13 H16 119.8 119.9
C20 C25 N24 121.3 120.4
C20 C25 C26 122.3 119.8
C11 C12 H15 119.5 119.8
C13 C12 H15 119.5 119.9
N24 C25 C26 116.4 119.8
C25 C26 N28 115.6 120.0
C25 C26 O27 122.0 120.0
O27 C26 N28 122.3 119.9
C26 N28 C29 128.0 120.0
C26 N28 H21 116.0 120.0
N28 C29 C34 123.6 119.6
C29 N28 H21 116.0 120.0
C30 C29 C34 116.2 120.7
C30 C31 C32 119.8 119.8
C31 C30 H22 118.7 119.5
C30 C31 H23 120.1 120.2
C29 C34 C33 122.8 119.3
C29 C34 H24 118.6 120.3
C31 C32 C33 119.7 119.6
C31 C32 C38 123.7 121.9
C32 C31 H23 120.1 120.1
C34 C33 C35 119.5 122.1
C33 C32 C38 116.5 118.5
C32 C33 C35 121.7 118.2
C32 C38 N37 122.0 119.8
C33 C35 C36 118.0 118.9
C33 C35 H25 121.0 120.5
C36 C35 H25 121.0 120.6
C35 C36 H26 119.4 119.0
N37 C36 H26 119.4 119.0
H1 C1 H2 109.5 109.4
H1 C1 H3 109.4 109.5
H2 C1 H3 109.5 109.5
H4 C3 H5 109.5 109.4
H4 C3 H6 109.5 109.5
H5 C3 H6 109.5 109.5
H7 C4 H8 109.5 109.5
H7 C4 H9 109.4 109.5
H8 C4 H9 109.5 109.5
H11 C6 H12 109.4 109.5
H27 N39 H28 109.5 119.9
H29 C41 H30 109.5 109.5
H29 C41 H31 109.4 109.5
H30 C41 H31 109.5 109.5

Torsion Angles for 1NK

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O7 C6 C5 N8 46.8 296.7
O7 C6 C5 H10 290.4 176.8
H11 C6 O7 H12 241.3 120.0
C6 C5 N8 C9 242.8 205.0
N8 C5 C6 H10 116.4 120.0
C6 C5 N8 H14 62.8 25.0
C1 C2 C3 C4 117.1 120.0
C3 C2 C1 H1 180.0 314.3
C3 C2 C1 H2 300.0 74.2
C3 C2 C1 H3 60.0 194.2
C3 C2 C4 H7 180.0 180.0
C3 C2 C4 H8 300.0 300.0
C3 C2 C4 H9 60.0 60.0
O19 C17 O18 H18 360.0 0.1
C3 C2 C1 C4 244.7 239.9
C1 C2 C4 H7 65.6 60.0
C1 C2 C4 H8 185.6 180.0
C1 C2 C4 H9 305.6 300.0
H1 C1 C2 H2 240.0 240.1
H1 C1 C2 H3 120.0 120.1
H2 C1 C2 H3 240.0 240.0
C5 C2 C1 H1 51.3 194.3
C5 C2 C1 H2 171.3 314.2
C5 C2 C1 H3 291.3 74.2
C5 C2 C4 H7 304.1 300.0
C5 C2 C4 H8 64.1 60.0
C5 C2 C4 H9 184.1 180.0
C6 C5 N8 H10 244.1 240.0
C5 N8 C9 C11 187.5 180.0
C5 N8 C9 O10 9.8 0.0
C9 N8 C5 H14 180.0 180.0
C4 C2 C1 H1 295.3 74.3
C4 C2 C1 H2 55.3 194.3
C4 C2 C1 H3 175.3 314.3
H7 C4 C2 H8 240.0 240.0
H7 C4 C2 H9 120.0 120.0
H8 C4 C2 H9 240.0 240.0
C22 C21 C20 C25 2.9 0.3
C23 C22 C21 H19 176.3 180.0
C22 C23 N24 C25 358.8 359.7
C9 N8 C5 H10 358.7 325.0
C5 N8 C9 H14 180.0 180.0
O10 C9 N8 C11 182.3 180.0
N8 C9 C11 C12 223.0 0.0
C14 C20 C21 C25 174.7 179.7
C21 C20 C25 N24 358.8 359.4
C21 C20 C25 C26 181.6 179.7
C17 C15 C14 C20 4.5 360.0
O40 C23 C22 H20 2.1 360.0
H29 C41 O40 H30 240.0 240.0
H29 C41 O40 H31 120.0 120.0
H30 C41 O40 H31 240.0 240.0
N24 C23 C22 H20 182.7 180.0
C20 C25 N24 C23 0.3 0.6
C23 N24 C25 C26 177.7 180.3
C16 C15 C14 C20 179.0 179.8
C16 C11 C12 H15 179.2 180.2
C15 C14 C20 C25 55.1 65.0
C15 C14 C13 H16 180.9 180.0
N8 C9 C11 O10 182.2 180.0
C11 C9 N8 H14 7.5 360.0
C9 C11 C12 H15 358.4 360.0
N8 C9 O10 C11 177.6 180.0
O10 C9 N8 H14 189.8 180.0
O10 C9 C11 C12 40.8 180.0
C21 C20 C14 C25 186.0 180.3
C20 C14 C13 H16 359.1 360.0
C14 C20 C25 N24 184.9 179.7
C14 C20 C25 C26 7.6 0.1
C14 C13 C12 H15 180.9 180.0
C23 N24 C25 C20 0.3 0.6
N24 C25 C20 C26 177.2 179.7
C20 C25 C26 N28 217.4 180.0
C20 C25 C26 O27 34.1 359.9
C13 C12 C11 H15 180.0 180.0
C11 C12 C13 H15 180.0 180.0
C20 C25 N24 C26 182.6 180.3
N24 C25 C26 N28 40.0 0.3
N24 C25 C26 O27 216.7 180.2
C20 C25 C26 N24 177.4 179.7
O27 C26 C25 N28 176.7 179.9
C25 C26 N28 C29 201.3 175.3
C25 C26 N28 H21 21.3 355.4
C25 C26 N28 O27 176.7 179.9
C26 N28 C29 C34 19.8 36.4
C29 N28 C26 H21 180.0 179.9
C25 C26 O27 N28 183.5 180.1
O27 C26 N28 C29 24.6 355.4
O27 C26 N28 H21 204.6 175.4
C26 N28 C29 H21 180.0 180.1
C30 C29 N28 C34 175.7 180.2
N28 C29 C34 C33 175.2 179.7
N28 C29 C34 H24 355.2 0.0
N28 C29 C30 C34 184.0 179.7
C30 C29 N28 H21 15.5 36.5
C30 C29 C34 C33 359.3 359.5
C30 C29 C34 H24 179.3 179.8
C31 C30 C29 C34 3.1 0.3
C30 C31 C32 C33 358.5 0.0
C30 C31 C32 C38 182.1 180.0
C32 C31 C30 H23 180.0 180.0
C34 C29 N28 H21 199.8 216.3
C29 C34 C33 C35 179.1 180.3
C32 C31 C30 H22 178.0 180.0
C30 C31 C32 H23 180.0 180.0
C33 C32 C31 C38 176.4 180.0
C31 C32 C33 C35 182.0 180.0
C31 C32 C38 N37 176.7 180.0
C29 C34 C33 H24 180.0 180.3
C34 C33 C32 C38 180.4 179.7
C32 C33 C34 C35 178.3 180.2
C34 C33 C35 C36 179.1 180.2
C34 C33 C35 H25 359.1 0.2
C29 C34 C33 C32 357.3 0.5
C31 C32 C33 C38 183.4 180.0
C33 C32 C31 H23 178.5 180.0
C34 C33 C32 C35 181.8 179.8
C33 C32 C38 N37 0.2 0.0
C32 C33 C35 C36 0.8 0.0
C32 C33 C35 H25 180.9 180.0
C31 C32 C38 C33 176.5 180.0
C38 C32 C31 H23 2.1 360.0
C38 C32 C33 C35 358.6 360.0
C35 C33 C32 C38 358.6 360.0
C36 C35 C33 H25 180.0 180.0
C33 C35 C36 H26 180.9 180.0
C38 N37 C36 H26 177.9 180.0
C33 C35 C36 H25 180.0 180.0
N37 C36 C35 H26 180.0 180.0
C32 C38 N37 C36 1.6 360.0
N37 C36 C35 H25 180.9 180.0
C35 C36 N37 H26 180.0 180.0
H1 C1 C2 C4 295.3 74.3
C2 C1 H1 H2 120.0 120.0
C2 C1 H1 H3 240.0 240.0
H2 C1 H1 H3 120.0 120.0
H2 C1 C2 C4 55.3 194.3
C2 C1 H2 H1 240.0 240.0
C2 C1 H2 H3 120.0 120.0
H1 C1 H2 H3 240.0 239.9
H3 C1 C2 C4 175.3 314.3
C2 C1 H3 H1 120.0 120.0
C2 C1 H3 H2 240.0 240.0
H1 C1 H3 H2 120.0 120.0
H4 C3 C2 C4 62.9 300.1
H5 C3 H4 H6 120.0 120.1
H5 C3 C2 C4 182.9 59.9
H4 C3 H5 H6 240.0 239.9
H6 C3 C2 C4 302.9 180.0
H4 C3 H6 H5 120.0 120.0
C2 C4 H7 H8 120.0 120.0
C2 C4 H7 H9 240.0 240.0
H8 C4 H7 H9 120.0 120.0
C2 C4 H8 H7 240.0 240.0
C2 C4 H8 H9 120.0 119.9
H7 C4 H8 H9 240.1 240.0
C2 C4 H9 H7 120.0 120.0
C2 C4 H9 H8 240.0 240.0
H7 C4 H9 H8 120.0 120.0
C6 C5 H10 N8 116.4 120.0
H10 C5 N8 C9 358.7 325.0
H10 C5 N8 H14 178.7 145.0
O7 C6 H11 H12 118.1 240.0
H11 C6 C5 N8 286.1 56.7
H11 C6 C5 H10 169.7 296.7
O7 C6 H12 H11 241.9 120.0
H12 C6 C5 N8 167.4 176.7
H12 C6 C5 H10 51.0 56.8
H13 O7 C6 H11 300.6 60.0
H13 O7 C6 H12 59.4 300.0
C5 N8 H14 C9 180.0 180.0
H14 N8 C5 H10 178.7 145.0
H14 N8 C9 C11 7.5 360.0
H14 N8 C9 O10 189.8 180.0
H16 C13 C12 H15 0.9 360.0
H19 C21 C20 C25 182.9 180.3
H20 C22 C21 H19 356.3 360.0
H20 C22 C23 N24 182.7 180.0
C26 N28 H21 C29 180.0 179.9
H21 N28 C29 C34 199.8 216.3
H22 C30 C29 C34 183.0 180.2
H22 C30 C31 C32 178.0 180.0
H22 C30 C31 H23 358.0 0.1
C30 C31 H23 C32 180.0 180.0
H23 C31 C30 H22 358.0 0.1
H23 C31 C32 C33 178.5 180.0
H23 C31 C32 C38 2.1 360.0
C29 C34 H24 C33 180.0 179.7
H24 C34 C33 C35 359.1 360.0
C33 C35 H25 C36 180.0 180.0
H25 C35 C36 H26 0.9 0.1
H26 C36 C35 H25 0.9 0.1
O40 C41 H29 H30 120.0 120.0
O40 C41 H29 H31 240.0 240.0
H30 C41 H29 H31 120.0 120.0
O40 C41 H30 H29 240.0 240.0
O40 C41 H30 H31 120.0 120.0
H29 C41 H30 H31 240.0 240.0
O40 C41 H31 H29 120.0 120.0
O40 C41 H31 H30 240.0 240.0
H29 C41 H31 H30 120.0 120.0