Atom Nomenclature for 1N8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1N8

Atom Name (V3) Atom Name (V2)
C22 C22
C23 C23
C11 C11
C14 C14
N3 N3
C15 C15
C20 C20
C19 C19
C18 C18
C17 C17
C16 C16
C21 C21
F1 F1
F2 F2
F3 F3
O1 O1
C12 C12
C13 C13
C24 C24
C25 C25
N4 N4
C26 C26
C27 C27
N6 N6
C28 C28
C29 C29
C30 C30
C5 C5
N1 N1
C2 C2
C3 C3
C4 C4
N5 N5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
N2 N2
C1 C1
O2 O2
H22 H22
H23 H23
HN3 HN3
H19 H19
H18 H18
H16 H16
H12 H12
H251 1H25
H252 2H25
H253 3H25
HN4 HN4
H271 1H27
H272 2H27
H281 1H28
H282 2H28
H291 1H29
H292 2H29
H301 1H30
H302 2H30
H303 3H30
H51 1H5
H52 2H5
H53 3H5
H2 H2
H7 H7
H9 H9
H10 H10
HN2 HN2
H11 1H1
H12A 2H1
H13 3H1