PDB Chemical Component 1MM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1MM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C5 |
1.417 |
1.384 |
| C4 |
C3 |
1.467 |
1.384 |
| C4 |
H4 |
1.103 |
1.081 |
| C5 |
C6 |
1.429 |
1.378 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
C1 |
1.447 |
1.397 |
| C6 |
H6 |
1.103 |
1.080 |
| C1 |
C2 |
1.452 |
1.396 |
| C1 |
C11 |
1.543 |
1.478 |
| C2 |
C3 |
1.471 |
1.379 |
| C2 |
S7 |
1.817 |
1.762 |
| C3 |
H3 |
1.103 |
1.080 |
| S7 |
N8 |
1.683 |
1.656 |
| S7 |
O7A |
1.448 |
1.420 |
| S7 |
O7B |
1.429 |
1.420 |
| N8 |
C9 |
1.332 |
1.348 |
| N8 |
HN8 |
1.020 |
0.970 |
| C9 |
N10 |
1.302 |
1.347 |
| C9 |
O9 |
1.269 |
1.216 |
| N10 |
C2' |
1.318 |
1.385 |
| N10 |
H10 |
1.020 |
0.969 |
| C2' |
N1' |
1.435 |
1.331 |
| C2' |
N3' |
1.421 |
1.327 |
| N1' |
C6' |
1.445 |
1.321 |
| C6' |
N5' |
1.439 |
1.322 |
| C6' |
C7' |
1.518 |
1.507 |
| N5' |
C4' |
1.462 |
1.329 |
| C4' |
N3' |
1.419 |
1.327 |
| C4' |
O4' |
1.387 |
1.353 |
| C11 |
O12 |
1.437 |
1.347 |
| C11 |
O11 |
1.258 |
1.215 |
| O12 |
C13 |
1.422 |
1.452 |
| C13 |
H131 |
1.115 |
1.090 |
| C13 |
H132 |
1.115 |
1.090 |
| C13 |
H133 |
1.115 |
1.090 |
| O4' |
C5' |
1.421 |
1.429 |
| C5' |
H5'1 |
1.115 |
1.091 |
| C5' |
H5'2 |
1.115 |
1.090 |
| C5' |
H5'3 |
1.115 |
1.090 |
| C7' |
H7'1 |
1.115 |
1.090 |
| C7' |
H7'2 |
1.115 |
1.091 |
| C7' |
H7'3 |
1.115 |
1.090 |
Bond Angles for 1MM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
C3 |
121.3 |
120.3 |
| C5 |
C4 |
H4 |
117.6 |
119.8 |
| C4 |
C5 |
C6 |
120.9 |
120.2 |
| C4 |
C5 |
H5 |
119.2 |
119.9 |
| C3 |
C4 |
H4 |
121.1 |
119.8 |
| C4 |
C3 |
C2 |
116.8 |
120.1 |
| C4 |
C3 |
H3 |
121.5 |
119.9 |
| C6 |
C5 |
H5 |
120.0 |
119.9 |
| C5 |
C6 |
C1 |
120.9 |
119.8 |
| C5 |
C6 |
H6 |
118.9 |
120.1 |
| C1 |
C6 |
H6 |
120.2 |
120.1 |
| C6 |
C1 |
C2 |
118.3 |
119.7 |
| C6 |
C1 |
C11 |
125.4 |
120.1 |
| C2 |
C1 |
C11 |
116.4 |
120.1 |
| C1 |
C2 |
C3 |
121.8 |
119.8 |
| C1 |
C2 |
S7 |
134.7 |
120.1 |
| C1 |
C11 |
O12 |
105.9 |
120.0 |
| C1 |
C11 |
O11 |
123.1 |
120.0 |
| C3 |
C2 |
S7 |
103.5 |
120.1 |
| C2 |
C3 |
H3 |
121.7 |
120.0 |
| C2 |
S7 |
N8 |
106.5 |
107.4 |
| C2 |
S7 |
O7A |
110.9 |
105.8 |
| C2 |
S7 |
O7B |
113.4 |
105.8 |
| N8 |
S7 |
O7A |
104.6 |
105.8 |
| N8 |
S7 |
O7B |
100.7 |
105.8 |
| S7 |
N8 |
C9 |
122.8 |
120.0 |
| S7 |
N8 |
HN8 |
107.5 |
120.0 |
| O7A |
S7 |
O7B |
119.0 |
125.4 |
| C9 |
N8 |
HN8 |
107.4 |
120.0 |
| N8 |
C9 |
N10 |
107.5 |
120.0 |
| N8 |
C9 |
O9 |
121.6 |
120.0 |
| N10 |
C9 |
O9 |
130.9 |
120.0 |
| C9 |
N10 |
C2' |
128.5 |
120.0 |
| C9 |
N10 |
H10 |
115.1 |
120.1 |
| C2' |
N10 |
H10 |
116.4 |
120.0 |
| N10 |
C2' |
N1' |
120.9 |
120.0 |
| N10 |
C2' |
N3' |
119.9 |
120.1 |
| N1' |
C2' |
N3' |
119.2 |
119.9 |
| C2' |
N1' |
C6' |
122.0 |
120.0 |
| C2' |
N3' |
C4' |
120.5 |
119.9 |
| N1' |
C6' |
N5' |
118.1 |
120.2 |
| N1' |
C6' |
C7' |
121.6 |
119.9 |
| N5' |
C6' |
C7' |
120.2 |
119.9 |
| C6' |
N5' |
C4' |
119.6 |
120.1 |
| C6' |
C7' |
H7'1 |
107.9 |
109.5 |
| C6' |
C7' |
H7'2 |
121.6 |
109.5 |
| C6' |
C7' |
H7'3 |
107.9 |
109.5 |
| N5' |
C4' |
N3' |
120.6 |
120.0 |
| N5' |
C4' |
O4' |
120.5 |
120.0 |
| N3' |
C4' |
O4' |
118.9 |
120.0 |
| C4' |
O4' |
C5' |
139.6 |
106.8 |
| O12 |
C11 |
O11 |
131.1 |
120.0 |
| C11 |
O12 |
C13 |
117.3 |
120.0 |
| O12 |
C13 |
H131 |
109.4 |
109.5 |
| O12 |
C13 |
H132 |
117.3 |
109.5 |
| O12 |
C13 |
H133 |
109.4 |
109.5 |
| H131 |
C13 |
H132 |
109.4 |
109.4 |
| H131 |
C13 |
H133 |
100.8 |
109.5 |
| H132 |
C13 |
H133 |
109.4 |
109.4 |
| O4' |
C5' |
H5'1 |
102.0 |
109.4 |
| O4' |
C5' |
H5'2 |
139.6 |
109.5 |
| O4' |
C5' |
H5'3 |
102.0 |
109.5 |
| H5'1 |
C5' |
H5'2 |
102.0 |
109.4 |
| H5'1 |
C5' |
H5'3 |
106.0 |
109.5 |
| H5'2 |
C5' |
H5'3 |
102.0 |
109.5 |
| H7'1 |
C7' |
H7'2 |
107.9 |
109.5 |
| H7'1 |
C7' |
H7'3 |
102.0 |
109.5 |
| H7'2 |
C7' |
H7'3 |
107.9 |
109.5 |
Torsion Angles for 1MM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
C2 |
0.0 |
359.6 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
C1 |
359.9 |
359.9 |
| C4 |
C5 |
C6 |
H6 |
179.9 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
0.0 |
0.1 |
| C3 |
C4 |
C5 |
H5 |
180.0 |
180.1 |
| C1 |
C2 |
C3 |
C4 |
359.9 |
0.6 |
| C4 |
C3 |
C2 |
S7 |
179.7 |
180.1 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
| C5 |
C4 |
H4 |
C3 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.1 |
360.0 |
| H4 |
C4 |
C3 |
C2 |
180.0 |
179.7 |
| H4 |
C4 |
C3 |
H3 |
0.0 |
0.0 |
| C6 |
C5 |
C4 |
C3 |
0.0 |
0.1 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C5 |
C6 |
C1 |
C2 |
0.0 |
0.3 |
| C5 |
C6 |
C1 |
C11 |
179.9 |
180.0 |
| H5 |
C5 |
C4 |
C3 |
180.0 |
180.1 |
| H5 |
C5 |
C4 |
H4 |
0.1 |
360.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
C1 |
179.9 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
0.0 |
| C1 |
C6 |
C5 |
H5 |
179.9 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
| C2 |
C1 |
C6 |
C11 |
180.1 |
180.3 |
| C6 |
C1 |
C2 |
C3 |
0.1 |
359.4 |
| C6 |
C1 |
C2 |
S7 |
180.4 |
180.0 |
| C6 |
C1 |
C11 |
O12 |
67.8 |
1.4 |
| C6 |
C1 |
C11 |
O11 |
247.4 |
181.4 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
0.0 |
| C5 |
C6 |
H6 |
C1 |
180.0 |
179.9 |
| H6 |
C6 |
C1 |
C2 |
180.0 |
180.2 |
| H6 |
C6 |
C1 |
C11 |
359.9 |
359.9 |
| C4 |
C3 |
C2 |
C1 |
359.9 |
0.6 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
180.2 |
| C6 |
C1 |
C2 |
C11 |
179.9 |
179.7 |
| C2 |
C1 |
C11 |
O12 |
247.7 |
181.1 |
| C2 |
C1 |
C11 |
O11 |
67.3 |
1.1 |
| C3 |
C2 |
C1 |
S7 |
179.7 |
179.5 |
| C1 |
C2 |
C3 |
H3 |
179.9 |
180.3 |
| C1 |
C2 |
S7 |
N8 |
34.4 |
59.3 |
| C1 |
C2 |
S7 |
O7A |
147.7 |
171.9 |
| C1 |
C2 |
S7 |
O7B |
284.6 |
306.8 |
| C11 |
C1 |
C6 |
H6 |
359.9 |
359.9 |
| C6 |
C1 |
C11 |
C2 |
180.1 |
180.3 |
| C11 |
C1 |
C2 |
C3 |
180.1 |
179.8 |
| C11 |
C1 |
C2 |
S7 |
0.5 |
0.3 |
| O12 |
C11 |
C1 |
O11 |
180.4 |
180.1 |
| C1 |
C11 |
O12 |
C13 |
180.0 |
185.1 |
| C2 |
C3 |
C4 |
H4 |
180.0 |
179.7 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
| C3 |
C2 |
C1 |
C11 |
180.1 |
179.8 |
| C1 |
C2 |
C3 |
S7 |
180.2 |
180.5 |
| C3 |
C2 |
S7 |
N8 |
214.7 |
239.9 |
| C3 |
C2 |
S7 |
O7A |
328.0 |
352.4 |
| C3 |
C2 |
S7 |
O7B |
104.8 |
127.3 |
| S7 |
C2 |
C1 |
C11 |
0.5 |
0.3 |
| C1 |
C2 |
S7 |
C3 |
179.7 |
179.5 |
| S7 |
C2 |
C3 |
H3 |
359.7 |
359.8 |
| N8 |
S7 |
C2 |
O7A |
246.8 |
247.4 |
| N8 |
S7 |
C2 |
O7B |
109.9 |
112.6 |
| C2 |
S7 |
N8 |
C9 |
60.0 |
61.3 |
| C2 |
S7 |
N8 |
HN8 |
294.8 |
241.3 |
| O7A |
S7 |
C2 |
O7B |
223.1 |
225.2 |
| H3 |
C3 |
C4 |
H4 |
0.0 |
0.0 |
| C4 |
C3 |
H3 |
C2 |
180.0 |
179.7 |
| H3 |
C3 |
C2 |
S7 |
359.7 |
359.8 |
| C2 |
S7 |
N8 |
O7A |
117.5 |
112.6 |
| C2 |
S7 |
N8 |
O7B |
241.5 |
247.4 |
| O7A |
S7 |
N8 |
O7B |
124.0 |
134.8 |
| C9 |
N8 |
S7 |
HN8 |
125.2 |
179.9 |
| S7 |
N8 |
C9 |
N10 |
179.3 |
184.8 |
| S7 |
N8 |
C9 |
O9 |
359.3 |
4.9 |
| C2 |
S7 |
O7A |
N8 |
245.5 |
246.3 |
| C2 |
S7 |
O7A |
O7B |
134.2 |
123.1 |
| N8 |
S7 |
O7A |
O7B |
248.6 |
236.9 |
| O7A |
S7 |
N8 |
C9 |
302.6 |
308.7 |
| O7A |
S7 |
N8 |
HN8 |
177.3 |
128.8 |
| C2 |
S7 |
O7B |
N8 |
113.4 |
113.7 |
| C2 |
S7 |
O7B |
O7A |
226.9 |
236.9 |
| N8 |
S7 |
O7B |
O7A |
113.5 |
123.1 |
| O7B |
S7 |
N8 |
C9 |
178.6 |
173.9 |
| O7B |
S7 |
N8 |
HN8 |
53.3 |
353.9 |
| C9 |
N8 |
S7 |
O7A |
302.6 |
308.7 |
| C9 |
N8 |
S7 |
O7B |
178.6 |
173.9 |
| S7 |
N8 |
C9 |
HN8 |
234.7 |
180.1 |
| N10 |
C9 |
N8 |
O9 |
180.1 |
179.9 |
| N8 |
C9 |
N10 |
C2' |
179.7 |
185.4 |
| N8 |
C9 |
N10 |
H10 |
359.7 |
5.5 |
| HN8 |
N8 |
S7 |
O7A |
177.3 |
128.8 |
| HN8 |
N8 |
S7 |
O7B |
53.3 |
353.9 |
| S7 |
N8 |
HN8 |
C9 |
134.0 |
179.9 |
| HN8 |
N8 |
C9 |
N10 |
304.6 |
4.8 |
| HN8 |
N8 |
C9 |
O9 |
124.5 |
184.8 |
| N10 |
C9 |
N8 |
HN8 |
304.6 |
4.8 |
| N8 |
C9 |
N10 |
O9 |
179.9 |
180.1 |
| C2' |
N10 |
C9 |
H10 |
180.0 |
179.9 |
| C9 |
N10 |
C2' |
N1' |
178.9 |
185.3 |
| C9 |
N10 |
C2' |
N3' |
359.1 |
5.1 |
| O9 |
C9 |
N8 |
HN8 |
124.5 |
184.8 |
| N8 |
C9 |
O9 |
N10 |
180.1 |
179.9 |
| O9 |
C9 |
N10 |
C2' |
359.8 |
5.4 |
| O9 |
C9 |
N10 |
H10 |
179.8 |
185.4 |
| C2' |
N10 |
C9 |
O9 |
359.8 |
5.4 |
| C9 |
N10 |
C2' |
H10 |
180.0 |
180.1 |
| N1' |
C2' |
N10 |
N3' |
179.8 |
180.2 |
| N10 |
C2' |
N1' |
C6' |
180.3 |
180.0 |
| N10 |
C2' |
N3' |
C4' |
179.7 |
179.8 |
| H10 |
N10 |
C9 |
O9 |
179.8 |
185.4 |
| C9 |
N10 |
H10 |
C2' |
180.0 |
179.9 |
| H10 |
N10 |
C2' |
N1' |
358.9 |
5.2 |
| H10 |
N10 |
C2' |
N3' |
179.1 |
185.0 |
| N1' |
C2' |
N10 |
H10 |
358.9 |
5.2 |
| N10 |
C2' |
N1' |
N3' |
180.2 |
179.8 |
| N1' |
C2' |
N3' |
C4' |
359.9 |
359.5 |
| C2' |
N1' |
C6' |
N5' |
360.0 |
0.1 |
| C2' |
N1' |
C6' |
C7' |
179.9 |
180.0 |
| N3' |
C2' |
N10 |
H10 |
179.1 |
185.0 |
| N10 |
C2' |
N3' |
N1' |
179.8 |
180.2 |
| N3' |
C2' |
N1' |
C6' |
0.1 |
0.2 |
| N5' |
C4' |
N3' |
C2' |
359.9 |
0.5 |
| C2' |
N3' |
C4' |
O4' |
180.1 |
180.2 |
| C6' |
N1' |
C2' |
N3' |
0.1 |
0.2 |
| N5' |
C6' |
N1' |
C7' |
180.0 |
180.0 |
| N1' |
C6' |
N5' |
C4' |
359.8 |
359.9 |
| N1' |
C6' |
C7' |
H7'1 |
54.7 |
90.0 |
| N1' |
C6' |
C7' |
H7'2 |
180.0 |
210.0 |
| N1' |
C6' |
C7' |
H7'3 |
305.3 |
330.0 |
| N1' |
C6' |
N5' |
C7' |
180.0 |
180.0 |
| N5' |
C6' |
C7' |
H7'1 |
234.7 |
270.0 |
| N5' |
C6' |
C7' |
H7'2 |
360.0 |
30.0 |
| N5' |
C6' |
C7' |
H7'3 |
125.2 |
150.0 |
| C6' |
N5' |
C4' |
N3' |
0.3 |
359.8 |
| C6' |
N5' |
C4' |
O4' |
180.1 |
180.0 |
| N1' |
C6' |
C7' |
N5' |
180.0 |
180.0 |
| C7' |
C6' |
N5' |
C4' |
179.9 |
180.0 |
| H7'1 |
C7' |
C6' |
H7'2 |
234.7 |
240.0 |
| H7'1 |
C7' |
C6' |
H7'3 |
109.5 |
120.0 |
| H7'2 |
C7' |
C6' |
H7'3 |
234.7 |
240.0 |
| C2' |
N3' |
C4' |
N5' |
359.9 |
0.5 |
| C4' |
N5' |
C6' |
C7' |
179.9 |
180.0 |
| N3' |
C4' |
N5' |
O4' |
180.2 |
179.8 |
| N5' |
C4' |
O4' |
C5' |
0.1 |
185.2 |
| N5' |
C4' |
N3' |
O4' |
179.8 |
180.2 |
| N3' |
C4' |
O4' |
C5' |
179.9 |
5.4 |
| N5' |
C4' |
O4' |
N3' |
180.2 |
179.8 |
| C4' |
O4' |
C5' |
H5'1 |
54.8 |
304.4 |
| C4' |
O4' |
C5' |
H5'2 |
180.0 |
64.3 |
| C4' |
O4' |
C5' |
H5'3 |
305.3 |
184.4 |
| C1 |
C11 |
O12 |
O11 |
179.6 |
179.9 |
| C11 |
O12 |
C13 |
H131 |
54.7 |
295.0 |
| C11 |
O12 |
C13 |
H132 |
180.0 |
55.0 |
| C11 |
O12 |
C13 |
H133 |
305.3 |
175.0 |
| C1 |
C11 |
O11 |
O12 |
180.5 |
180.1 |
| O11 |
C11 |
O12 |
C13 |
0.4 |
5.1 |
| C13 |
O12 |
C11 |
O11 |
0.4 |
5.1 |
| H131 |
C13 |
O12 |
H132 |
234.7 |
240.1 |
| H131 |
C13 |
O12 |
H133 |
109.5 |
120.1 |
| H132 |
C13 |
O12 |
H133 |
234.8 |
240.0 |
| O12 |
C13 |
H131 |
H132 |
129.7 |
120.0 |
| O12 |
C13 |
H131 |
H133 |
244.8 |
239.9 |
| H132 |
C13 |
H131 |
H133 |
115.1 |
120.0 |
| O12 |
C13 |
H132 |
H131 |
234.7 |
240.0 |
| O12 |
C13 |
H132 |
H133 |
125.2 |
120.0 |
| H131 |
C13 |
H132 |
H133 |
250.5 |
240.0 |
| O12 |
C13 |
H133 |
H131 |
115.2 |
120.0 |
| O12 |
C13 |
H133 |
H132 |
230.3 |
240.0 |
| H131 |
C13 |
H133 |
H132 |
115.2 |
120.0 |
| H5'1 |
C5' |
O4' |
H5'2 |
234.8 |
240.1 |
| H5'1 |
C5' |
O4' |
H5'3 |
109.5 |
120.0 |
| H5'2 |
C5' |
O4' |
H5'3 |
234.7 |
239.9 |
| O4' |
C5' |
H5'1 |
H5'2 |
147.3 |
120.0 |
| O4' |
C5' |
H5'1 |
H5'3 |
253.6 |
240.0 |
| H5'2 |
C5' |
H5'1 |
H5'3 |
106.4 |
120.0 |
| O4' |
C5' |
H5'2 |
H5'1 |
234.8 |
240.1 |
| O4' |
C5' |
H5'2 |
H5'3 |
125.3 |
120.1 |
| H5'1 |
C5' |
H5'2 |
H5'3 |
250.5 |
240.0 |
| O4' |
C5' |
H5'3 |
H5'1 |
106.3 |
120.0 |
| O4' |
C5' |
H5'3 |
H5'2 |
212.7 |
239.9 |
| H5'1 |
C5' |
H5'3 |
H5'2 |
106.4 |
120.0 |
| C6' |
C7' |
H7'1 |
H7'2 |
133.1 |
120.0 |
| C6' |
C7' |
H7'1 |
H7'3 |
246.5 |
240.0 |
| H7'2 |
C7' |
H7'1 |
H7'3 |
113.5 |
120.0 |
| C6' |
C7' |
H7'2 |
H7'1 |
234.7 |
240.0 |
| C6' |
C7' |
H7'2 |
H7'3 |
125.2 |
120.0 |
| H7'1 |
C7' |
H7'2 |
H7'3 |
250.5 |
240.0 |
| C6' |
C7' |
H7'3 |
H7'1 |
113.5 |
120.0 |
| C6' |
C7' |
H7'3 |
H7'2 |
226.9 |
240.0 |
| H7'1 |
C7' |
H7'3 |
H7'2 |
113.5 |
120.0 |