PDB Chemical Component 1MG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1MG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.514 1.479
P OP2 1.447 1.610
P OP3 1.601 1.610
P O5' 1.575 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.459 1.428
C5' C4' 1.529 1.530
C5' H5' 1.115 1.091
C5' H5'' 1.115 1.089
C4' O4' 1.421 1.444
C4' C3' 1.534 1.545
C4' H4' 1.115 1.090
O4' C1' 1.413 1.443
C3' O3' 1.433 1.429
C3' C2' 1.526 1.545
C3' H3' 1.116 1.091
O3' HO3' 0.950 0.967
C2' O2' 1.413 1.429
C2' C1' 1.525 1.543
C2' H2' 1.115 1.091
O2' HO2' 0.949 0.968
C1' N9 1.441 1.464
C1' H1' 1.115 1.090
N9 C8 1.379 1.364
N9 C4 1.378 1.369
C8 N7 1.315 1.301
C8 H8 1.103 1.080
N7 C5 1.382 1.356
C5 C6 1.421 1.415
C5 C4 1.372 1.399
C6 O6 1.236 1.219
C6 N1 1.371 1.351
N1 CM1 1.437 1.464
N1 C2 1.358 1.363
CM1 HM11 1.115 1.089
CM1 HM12 1.115 1.090
CM1 HM13 1.114 1.090
C2 N2 1.348 1.372
C2 N3 1.327 1.315
N2 HN21 1.020 0.969
N2 HN22 1.019 0.971
N3 C4 1.356 1.337

Bond Angles for 1MG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.5 109.5
OP1 P OP3 100.4 109.5
OP1 P O5' 110.6 109.5
OP2 P OP3 107.1 109.4
OP2 P O5' 113.0 109.4
P OP2 HOP2 119.5 106.8
OP3 P O5' 104.2 109.5
P OP3 HOP3 100.3 106.7
P O5' C5' 116.9 106.8
O5' C5' C4' 104.1 109.5
O5' C5' H5' 114.2 109.4
O5' C5' H5'' 114.2 109.5
C4' C5' H5' 114.2 109.5
C4' C5' H5'' 114.2 109.5
C5' C4' O4' 108.2 110.4
C5' C4' C3' 113.4 110.5
C5' C4' H4' 106.9 110.4
H5' C5' H5'' 96.3 109.5
O4' C4' C3' 107.1 104.8
O4' C4' H4' 113.2 110.4
C4' O4' C1' 109.0 105.3
C3' C4' H4' 108.1 110.3
C4' C3' O3' 112.3 110.5
C4' C3' C2' 101.9 104.1
C4' C3' H3' 113.5 110.4
O4' C1' C2' 106.5 104.9
O4' C1' N9 119.1 110.4
O4' C1' H1' 105.6 110.4
O3' C3' C2' 111.9 110.6
O3' C3' H3' 103.8 110.5
C3' O3' HO3' 112.2 106.8
C2' C3' H3' 113.8 110.6
C3' C2' O2' 108.7 110.5
C3' C2' C1' 99.9 104.0
C3' C2' H2' 116.7 110.5
O2' C2' C1' 111.7 110.8
O2' C2' H2' 105.9 110.4
C2' O2' HO2' 108.7 106.8
C1' C2' H2' 113.9 110.4
C2' C1' N9 111.4 110.5
C2' C1' H1' 114.3 110.4
N9 C1' H1' 100.1 110.2
C1' N9 C8 128.4 126.2
C1' N9 C4 126.7 126.3
C8 N9 C4 104.9 107.4
N9 C8 N7 114.1 109.9
N9 C8 H8 125.0 125.1
N9 C4 C5 106.3 106.1
N9 C4 N3 125.4 134.2
N7 C8 H8 120.9 125.0
C8 N7 C5 103.5 109.3
N7 C5 C6 131.4 134.1
N7 C5 C4 111.2 107.3
C6 C5 C4 117.4 118.6
C5 C6 O6 126.0 120.9
C5 C6 N1 114.6 118.4
C5 C4 N3 128.3 119.7
O6 C6 N1 119.4 120.8
C6 N1 CM1 118.1 119.9
C6 N1 C2 122.3 120.3
CM1 N1 C2 119.6 119.8
N1 CM1 HM11 118.0 109.5
N1 CM1 HM12 109.1 109.5
N1 CM1 HM13 109.1 109.5
N1 C2 N2 115.3 119.1
N1 C2 N3 126.1 121.9
HM11 CM1 HM12 109.1 109.4
HM11 CM1 HM13 109.2 109.5
HM12 CM1 HM13 101.0 109.5
N2 C2 N3 118.6 119.0
C2 N2 HN21 115.2 120.1
C2 N2 HN22 110.0 120.0
C2 N3 C4 111.3 121.1
HN21 N2 HN22 110.2 120.0

Torsion Angles for 1MG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 116.6 120.0
OP2 P OP1 O5' 226.2 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 109.6 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 38.9 60.0
OP1 P OP2 OP3 247.0 240.0
OP1 P OP2 O5' 132.8 120.0
OP3 P OP2 O5' 245.8 240.0
OP2 P OP3 HOP3 54.5 60.0
OP2 P O5' C5' 175.9 180.0
OP1 P OP3 OP2 125.5 120.0
OP1 P OP3 O5' 245.4 240.0
OP2 P OP3 O5' 119.9 120.0
OP3 P OP2 HOP2 293.0 60.0
OP3 P O5' C5' 291.8 300.0
OP1 P O5' OP2 223.0 240.0
OP1 P O5' OP3 107.1 120.0
OP2 P O5' OP3 244.1 240.0
O5' P OP2 HOP2 47.2 180.0
O5' P OP3 HOP3 294.5 300.0
P O5' C5' C4' 215.2 180.0
P O5' C5' H5' 340.4 60.1
P O5' C5' H5'' 89.9 300.0
HOP2 OP2 P OP3 293.0 60.0
HOP2 OP2 P O5' 47.2 180.0
HOP3 OP3 P O5' 294.5 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.3 240.0
O5' C5' C4' O4' 292.7 61.5
O5' C5' C4' C3' 51.3 176.9
O5' C5' C4' H4' 170.4 299.2
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.2 240.1
O5' C5' C4' H5'' 234.7 120.0
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 241.3 244.6
O4' C4' C5' H4' 122.3 122.3
C5' C4' O4' C1' 120.9 159.5
C3' C4' C5' H4' 241.0 237.7
C5' C4' C3' O3' 145.8 98.3
C5' C4' C3' C2' 265.8 217.1
C5' C4' C3' H3' 28.6 335.8
O5' C5' H5' C4' 240.3 120.0
O5' C5' H5' H5'' 120.1 240.0
C4' C5' H5' H5'' 239.8 120.0
H5' C5' C4' O4' 167.5 181.4
H5' C5' C4' C3' 286.1 296.9
H5' C5' C4' H4' 45.1 59.2
O5' C5' H5'' C4' 119.7 240.0
O5' C5' H5'' H5' 239.9 120.0
C4' C5' H5'' H5' 120.1 240.0
H5'' C5' C4' O4' 58.0 301.5
H5'' C5' C4' C3' 176.6 56.9
H5'' C5' C4' H4' 295.6 179.2
O4' C4' C5' H5' 167.5 181.4
O4' C4' C5' H5'' 58.0 301.5
C5' C4' O4' C3' 122.6 119.0
C5' C4' O4' H4' 241.6 237.7
C3' C4' O4' H4' 119.1 118.8
O4' C4' C3' O3' 265.1 217.2
O4' C4' C3' C2' 25.1 336.0
O4' C4' C3' H3' 147.9 94.7
C4' O4' C1' C2' 337.1 319.6
C4' O4' C1' N9 210.2 200.6
C4' O4' C1' H1' 98.9 78.4
C3' C4' C5' H5' 286.1 296.9
C3' C4' C5' H5'' 176.6 56.9
C5' C4' C3' O4' 240.7 241.1
C5' C4' C3' H4' 118.4 122.3
O4' C4' C3' H4' 237.7 241.2
C3' C4' O4' C1' 358.3 40.5
O3' C3' C4' C2' 240.1 241.2
O3' C3' C4' H3' 117.3 122.5
C4' C3' O3' HO3' 180.0 180.1
C2' C3' C4' H3' 237.2 241.3
C4' C3' C2' O2' 206.4 241.2
C4' C3' C2' C1' 323.5 0.1
C4' C3' C2' H2' 86.8 118.6
H4' C4' C5' H5' 45.1 59.2
H4' C4' C5' H5'' 295.6 179.2
C5' C4' H4' O4' 119.1 122.3
C5' C4' H4' C3' 237.6 237.6
O4' C4' H4' C3' 118.5 115.3
H4' C4' O4' C1' 239.3 281.7
H4' C4' C3' O3' 27.5 336.0
H4' C4' C3' C2' 147.4 94.7
H4' C4' C3' H3' 270.2 213.5
C1' O4' C4' C3' 358.3 40.5
C1' O4' C4' H4' 239.3 281.7
C3' C2' C1' O4' 37.5 23.9
O2' C2' C1' O4' 152.3 142.6
O4' C1' C2' H2' 272.3 265.3
C2' C1' O4' N9 126.9 119.0
C2' C1' O4' H1' 238.1 241.1
N9 C1' O4' H1' 111.3 122.1
O4' C1' N9 C8 127.2 27.1
O4' C1' N9 C4 305.8 207.0
O3' C3' C4' H4' 27.5 336.0
C4' C3' O3' C2' 113.9 114.7
C4' C3' O3' H3' 237.1 237.5
C2' C3' O3' H3' 123.1 122.8
O3' C3' C2' O2' 326.6 359.9
O3' C3' C2' C1' 83.7 118.8
O3' C3' C2' H2' 206.9 237.3
C2' C3' C4' H4' 147.4 94.7
C4' C3' C2' O3' 239.8 241.3
C4' C3' C2' H3' 122.6 118.6
O4' C1' C2' C3' 37.5 23.9
O3' C3' C2' H3' 242.7 237.3
C2' C3' O3' HO3' 66.1 65.3
O2' C2' C3' C1' 242.9 241.0
O2' C2' C3' H2' 119.6 122.6
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 236.7 241.5
C3' C2' C1' N9 168.8 142.8
C3' C2' C1' H1' 281.4 264.9
H3' C3' C4' H4' 270.2 213.5
C4' C3' H3' O3' 122.1 122.6
C4' C3' H3' C2' 244.0 245.3
O3' C3' H3' C2' 121.9 122.8
H3' C3' O3' HO3' 303.0 302.6
H3' C3' C2' O2' 83.8 122.6
H3' C3' C2' C1' 200.9 241.5
H3' C3' C2' H2' 324.2 0.0
HO3' O3' C3' C2' 66.1 65.3
HO3' O3' C3' H3' 303.0 302.6
O4' C1' C2' O2' 152.3 142.6
O2' C2' C3' H3' 83.8 122.6
C3' C2' O2' C1' 109.3 114.8
C3' C2' O2' H2' 233.9 237.4
C1' C2' O2' H2' 124.6 122.6
O2' C2' C1' N9 283.7 261.6
O2' C2' C1' H1' 36.2 23.7
O4' C1' C2' N9 228.7 241.1
O4' C1' C2' H1' 116.1 118.9
C1' C2' C3' H3' 200.9 241.5
C3' C2' C1' O2' 245.2 241.2
C3' C2' C1' H2' 125.2 118.6
O2' C2' C1' H2' 240.0 237.3
C1' C2' O2' HO2' 70.7 183.8
N9 C1' C2' H1' 247.5 237.9
C2' C1' N9 C8 2.7 271.5
C2' C1' N9 C4 181.3 91.4
H2' C2' C3' H3' 324.2 0.0
C3' C2' H2' O2' 121.1 122.6
C3' C2' H2' C1' 244.3 245.5
O2' C2' H2' C1' 123.2 122.9
H2' C2' O2' HO2' 306.1 61.2
H2' C2' C1' N9 43.7 24.2
H2' C2' C1' H1' 156.2 146.4
HO2' O2' C2' C1' 70.7 183.8
HO2' O2' C2' H2' 306.1 61.2
O4' C1' N9 C2' 124.5 115.6
O4' C1' N9 H1' 245.7 237.8
N9 C1' C2' H2' 43.7 24.2
C2' C1' N9 H1' 121.2 122.2
C8 N9 C1' C4 181.4 180.1
C1' N9 C8 N7 179.0 180.0
C1' N9 C8 H8 358.9 359.9
C1' N9 C4 C5 181.1 180.0
C1' N9 C4 N3 1.1 0.1
O4' C1' H1' C2' 243.3 244.5
O4' C1' H1' N9 124.2 122.2
H1' C1' C2' H2' 156.2 146.4
C2' C1' H1' N9 240.9 237.7
H1' C1' N9 C8 241.5 149.3
H1' C1' N9 C4 60.1 329.2
C8 N9 C1' H1' 241.5 149.3
C1' N9 C8 C4 178.8 179.9
C8 N9 C4 C5 360.0 359.9
C8 N9 C4 N3 179.9 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.8 360.0
C4 N9 C1' H1' 60.1 329.2
C1' N9 C4 C8 181.2 180.1
C4 N9 C8 N7 0.1 0.1
C4 N9 C8 H8 180.1 180.0
N7 C5 C4 N9 359.9 0.0
C6 C5 C4 N9 180.5 179.8
C5 C4 N9 N3 180.1 179.9
C2 N3 C4 N9 179.6 180.0
N7 C8 N9 C4 0.1 0.1
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.4 180.3
C8 N7 C5 C4 0.2 360.0
H8 C8 N9 C4 180.1 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 179.8 180.0
N9 C4 C5 N7 359.9 0.0
C5 N7 C8 H8 179.8 180.0
C6 C5 N7 C4 179.3 180.3
N7 C5 C6 O6 0.5 0.1
N7 C5 C6 N1 180.5 180.1
N7 C5 C4 N3 180.0 180.0
N9 C4 C5 C6 180.5 179.8
N7 C5 C6 C4 180.8 179.7
C6 C5 C4 N3 0.6 359.8
O6 C6 C5 N1 180.0 180.0
C5 C6 N1 CM1 180.6 179.8
C5 C6 N1 C2 359.9 359.6
N9 C4 C5 N3 179.9 180.0
N7 C5 C4 C6 179.4 180.2
C4 C5 C6 O6 179.7 180.4
C4 C5 C6 N1 359.7 0.4
C2 N3 C4 C5 359.6 0.0
O6 C6 C5 C4 179.7 180.4
C5 C6 O6 N1 180.0 180.0
O6 C6 N1 CM1 0.6 359.8
O6 C6 N1 C2 179.9 179.7
N1 C6 C5 C4 359.7 0.4
C5 C6 N1 O6 180.0 180.0
CM1 N1 C6 C2 180.8 180.2
C6 N1 CM1 HM11 180.0 114.8
C6 N1 CM1 HM12 305.2 234.8
C6 N1 CM1 HM13 54.7 354.8
C6 N1 C2 N2 179.9 180.2
C6 N1 C2 N3 0.3 0.2
C6 N1 CM1 C2 179.3 179.8
CM1 N1 C2 N2 359.1 360.0
CM1 N1 C2 N3 179.5 180.0
HM11 CM1 N1 HM12 234.8 240.0
HM11 CM1 N1 HM13 125.3 120.0
HM12 CM1 N1 HM13 250.5 240.0
C6 N1 C2 CM1 180.8 180.2
C2 N1 CM1 HM11 0.8 295.0
C2 N1 CM1 HM12 126.0 55.0
C2 N1 CM1 HM13 235.5 175.0
N2 C2 N1 N3 179.6 180.0
N1 C2 N2 HN21 180.0 185.8
N1 C2 N2 HN22 54.7 5.8
N1 C2 N3 C4 360.0 360.0
HM11 CM1 N1 C2 0.8 295.0
N1 CM1 HM11 HM12 125.2 120.0
N1 CM1 HM11 HM13 234.7 240.0
HM12 CM1 HM11 HM13 109.5 119.9
HM12 CM1 N1 C2 126.0 55.0
N1 CM1 HM12 HM11 229.8 240.0
N1 CM1 HM12 HM13 114.8 120.0
HM11 CM1 HM12 HM13 245.1 240.1
HM13 CM1 N1 C2 235.5 175.0
N1 CM1 HM13 HM11 130.3 120.1
N1 CM1 HM13 HM12 245.2 240.0
HM11 CM1 HM13 HM12 114.9 119.9
N1 C2 N2 N3 180.4 180.0
N2 C2 N3 C4 180.4 180.0
HN21 N2 C2 HN22 125.3 179.9
N9 C4 N3 C2 179.6 180.0
C5 C4 N3 C2 359.6 0.0
N1 C2 N3 N2 179.6 180.0
N3 C2 N2 HN21 359.6 5.7
N3 C2 N2 HN22 234.3 185.8
HN21 N2 C2 N3 359.6 5.7
C2 N2 HN21 HN22 234.8 180.1
HN22 N2 C2 N3 234.3 185.8
C2 N2 HN22 HN21 128.1 179.9
N9 C4 N3 C5 180.1 179.9