PDB Chemical Component 1MA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1MA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.466 1.480
P OP2 1.471 1.610
P OP3 1.586 1.610
P O5' 1.601 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.406 1.430
C5' C4' 1.529 1.529
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.091
C4' O4' 1.460 1.437
C4' C3' 1.538 1.541
C4' H4' 1.100 1.090
O4' C1' 1.407 1.444
C3' O3' 1.434 1.429
C3' C2' 1.518 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.402 1.429
C2' C1' 1.525 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.468 1.465
C1' H1' 1.100 1.090
N9 C8 1.363 1.367
N9 C4 1.378 1.356
C8 N7 1.306 1.308
C8 H8 1.080 1.080
N7 C5 1.389 1.335
C5 C6 1.467 1.474
C5 C4 1.370 1.408
C6 N6 1.477 1.313
C6 N1 1.448 1.397
N6 HN61 1.000 0.970
N1 CM1 1.476 1.465
N1 C2 1.358 1.363
CM1 HM11 1.100 1.090
CM1 HM12 1.100 1.090
CM1 HM13 1.101 1.090
C2 N3 1.370 1.309
C2 H2 1.080 1.080
N3 C4 1.356 1.345

Bond Angles for 1MA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.0 109.5
OP1 P OP3 112.5 109.5
OP1 P O5' 102.9 109.5
OP2 P OP3 106.0 109.5
OP2 P O5' 109.4 109.4
P OP2 HOP2 109.5 114.0
OP3 P O5' 104.9 109.5
P OP3 HOP3 109.5 114.0
P O5' C5' 121.1 123.0
O5' C5' C4' 110.6 109.5
O5' C5' H5' 109.2 109.4
O5' C5' H5'' 109.2 109.4
C4' C5' H5' 109.2 109.5
C4' C5' H5'' 109.2 109.5
C5' C4' O4' 110.4 109.9
C5' C4' C3' 117.8 109.9
C5' C4' H4' 107.6 109.9
H5' C5' H5'' 109.5 109.5
O4' C4' C3' 104.7 107.3
O4' C4' H4' 108.5 109.8
C4' O4' C1' 109.6 107.0
C3' C4' H4' 107.5 110.0
C4' C3' O3' 107.8 110.5
C4' C3' C2' 99.8 104.2
C4' C3' H3' 112.6 110.5
O4' C1' C2' 103.7 103.5
O4' C1' N9 110.4 110.6
O4' C1' H1' 110.2 110.6
O3' C3' C2' 108.2 110.5
O3' C3' H3' 114.4 110.4
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 113.0 110.6
C3' C2' O2' 116.2 110.9
C3' C2' C1' 100.0 102.1
C3' C2' H2' 110.0 110.9
O2' C2' C1' 108.2 110.9
O2' C2' H2' 111.7 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 109.9 110.9
C2' C1' N9 114.4 110.6
C2' C1' H1' 108.6 110.6
N9 C1' H1' 109.4 110.7
C1' N9 C8 126.9 126.3
C1' N9 C4 127.5 126.3
C8 N9 C4 105.5 107.4
N9 C8 N7 113.7 109.7
N9 C8 H8 123.2 125.1
N9 C4 C5 106.3 105.9
N9 C4 N3 129.5 133.4
N7 C8 H8 123.1 125.1
C8 N7 C5 104.3 109.1
N7 C5 C6 126.8 133.5
N7 C5 C4 110.1 107.8
C6 C5 C4 123.1 118.7
C5 C6 N6 121.0 123.6
C5 C6 N1 112.4 112.7
C5 C4 N3 124.2 120.6
N6 C6 N1 126.6 123.7
C6 N6 HN61 112.0 120.0
C6 N1 CM1 112.4 120.5
C6 N1 C2 117.5 118.9
CM1 N1 C2 130.1 120.5
N1 CM1 HM11 109.5 109.5
N1 CM1 HM12 109.5 109.5
N1 CM1 HM13 109.5 109.5
N1 C2 N3 131.0 123.4
N1 C2 H2 114.5 118.3
HM11 CM1 HM12 109.5 109.5
HM11 CM1 HM13 109.4 109.5
HM12 CM1 HM13 109.5 109.5
N3 C2 H2 114.5 118.3
C2 N3 C4 111.8 119.3

Torsion Angles for 1MA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 234.2 240.0
OP2 P OP1 O5' 121.8 120.0
OP1 P OP2 HOP2 360.0 60.0
OP3 P OP1 O5' 247.6 240.0
OP1 P OP3 HOP3 0.0 180.0
OP1 P O5' C5' 181.6 305.0
OP1 P OP2 OP3 128.8 120.0
OP1 P OP2 O5' 241.4 240.0
OP3 P OP2 O5' 112.7 120.0
OP2 P OP3 HOP3 133.1 300.0
OP2 P O5' C5' 52.9 185.0
OP1 P OP3 OP2 227.0 240.0
OP1 P OP3 O5' 111.2 120.0
OP2 P OP3 O5' 244.2 240.0
OP3 P OP2 HOP2 231.2 299.9
OP3 P O5' C5' 299.5 65.0
OP1 P O5' OP2 128.7 120.0
OP1 P O5' OP3 242.1 240.0
OP2 P O5' OP3 113.4 120.0
O5' P OP2 HOP2 118.6 179.9
O5' P OP3 HOP3 248.8 60.0
P O5' C5' C4' 209.3 180.0
P O5' C5' H5' 329.5 300.1
P O5' C5' H5'' 89.1 60.0
HOP2 OP2 P OP3 231.2 299.9
HOP2 OP2 P O5' 118.6 179.9
HOP3 OP3 P O5' 248.8 60.0
C4' C5' O5' H5' 239.8 239.9
C4' C5' O5' H5'' 120.2 120.0
O5' C5' C4' O4' 308.9 66.4
O5' C5' C4' C3' 69.0 184.3
O5' C5' C4' H4' 190.7 305.4
H5' C5' O5' H5'' 240.4 240.1
O5' C5' C4' H5' 120.2 120.0
O5' C5' C4' H5'' 239.9 240.0
H5' C5' C4' H5'' 119.6 120.0
O4' C4' C5' C3' 239.9 242.2
O4' C4' C5' H4' 118.2 121.0
C5' C4' O4' C1' 122.8 145.9
C3' C4' C5' H4' 238.4 238.8
C5' C4' C3' O3' 155.7 119.9
C5' C4' C3' C2' 268.5 238.5
C5' C4' C3' H3' 28.6 357.4
O5' C5' H5' C4' 238.9 240.0
O5' C5' H5' H5'' 119.5 119.9
C4' C5' H5' H5'' 240.5 240.0
H5' C5' C4' O4' 188.7 306.4
H5' C5' C4' C3' 308.8 64.3
H5' C5' C4' H4' 70.4 185.4
O5' C5' H5'' C4' 121.0 120.0
O5' C5' H5'' H5' 240.5 240.1
C4' C5' H5'' H5' 119.5 120.1
H5'' C5' C4' O4' 69.0 186.4
H5'' C5' C4' C3' 189.2 304.2
H5'' C5' C4' H4' 310.8 65.4
O4' C4' C5' H5' 188.7 306.4
O4' C4' C5' H5'' 69.0 186.4
C5' C4' O4' C3' 127.7 119.4
C5' C4' O4' H4' 242.3 239.0
C3' C4' O4' H4' 114.5 119.5
O4' C4' C3' O3' 278.7 239.3
O4' C4' C3' C2' 31.6 358.0
O4' C4' C3' H3' 151.6 116.8
C4' O4' C1' C2' 336.1 320.0
C4' O4' C1' N9 213.1 201.5
C4' O4' C1' H1' 92.2 78.5
C3' C4' C5' H5' 308.8 64.3
C3' C4' C5' H5'' 189.2 304.2
C5' C4' C3' O4' 236.9 240.6
C5' C4' C3' H4' 121.7 121.1
O4' C4' C3' H4' 244.8 240.6
C3' C4' O4' C1' 355.0 26.5
O3' C3' C4' C2' 247.2 241.3
O3' C3' C4' H3' 127.1 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 239.9 241.2
C4' C3' C2' O2' 199.2 220.9
C4' C3' C2' C1' 315.4 339.1
C4' C3' C2' H2' 71.0 97.4
H4' C4' C5' H5' 70.4 185.4
H4' C4' C5' H5'' 310.8 65.4
C5' C4' H4' O4' 119.5 121.0
C5' C4' H4' C3' 232.1 238.9
O4' C4' H4' C3' 112.7 117.9
H4' C4' O4' C1' 240.5 266.9
H4' C4' C3' O3' 33.9 358.7
H4' C4' C3' C2' 146.8 117.4
H4' C4' C3' H3' 266.8 236.2
C1' O4' C4' C3' 355.0 26.5
C1' O4' C4' H4' 240.5 266.9
C3' C2' C1' O4' 43.4 37.0
O2' C2' C1' O4' 165.4 155.2
O4' C1' C2' H2' 287.7 278.8
C2' C1' O4' N9 123.0 118.5
C2' C1' O4' H1' 243.9 241.5
N9 C1' O4' H1' 120.9 123.0
O4' C1' N9 C8 97.9 23.6
O4' C1' N9 C4 274.7 203.3
O3' C3' C4' H4' 33.9 358.7
C4' C3' O3' C2' 107.1 114.8
C4' C3' O3' H3' 233.9 237.5
C2' C3' O3' H3' 126.9 122.7
O3' C3' C2' O2' 311.7 339.6
O3' C3' C2' C1' 67.9 97.8
O3' C3' C2' H2' 183.5 216.0
C2' C3' C4' H4' 146.8 117.4
C4' C3' C2' O3' 247.5 241.3
C4' C3' C2' H3' 119.8 118.8
O4' C1' C2' C3' 43.4 37.0
O3' C3' C2' H3' 232.3 237.4
C2' C3' O3' HO3' 72.9 65.2
O2' C2' C3' C1' 243.9 241.8
O2' C2' C3' H2' 128.2 123.5
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 244.4 241.8
C3' C2' C1' N9 163.7 155.5
C3' C2' C1' H1' 286.1 278.5
H3' C3' C4' H4' 266.8 236.2
C4' C3' H3' O3' 123.5 122.5
C4' C3' H3' C2' 247.9 245.1
O3' C3' H3' C2' 124.4 122.6
H3' C3' O3' HO3' 306.1 302.5
H3' C3' C2' O2' 79.4 102.2
H3' C3' C2' C1' 195.5 220.4
H3' C3' C2' H2' 311.1 338.6
HO3' O3' C3' C2' 72.9 65.2
HO3' O3' C3' H3' 306.1 302.5
O4' C1' C2' O2' 165.4 155.2
O2' C2' C3' H3' 79.4 102.2
C3' C2' O2' C1' 111.4 112.7
C3' C2' O2' H2' 232.6 236.4
C1' C2' O2' H2' 121.1 123.6
O2' C2' C1' N9 285.7 273.7
O2' C2' C1' H1' 48.2 36.7
O4' C1' C2' N9 239.7 241.5
O4' C1' C2' H1' 117.2 118.5
C1' C2' C3' H3' 195.5 220.4
C3' C2' C1' O2' 238.0 241.8
C3' C2' C1' H2' 115.7 118.2
O2' C2' C1' H2' 237.8 236.5
C1' C2' O2' HO2' 68.6 185.8
N9 C1' C2' H1' 237.5 237.0
C2' C1' N9 C8 341.4 269.5
C2' C1' N9 C4 158.2 89.2
H2' C2' C3' H3' 311.1 338.6
C3' C2' H2' O2' 130.7 123.6
C3' C2' H2' C1' 250.8 247.3
O2' C2' H2' C1' 120.1 123.6
H2' C2' O2' HO2' 307.4 62.2
H2' C2' C1' N9 48.0 37.3
H2' C2' C1' H1' 170.4 160.3
HO2' O2' C2' C1' 68.6 185.8
HO2' O2' C2' H2' 307.4 62.2
O4' C1' N9 C2' 116.5 114.1
O4' C1' N9 H1' 238.6 237.0
N9 C1' C2' H2' 48.0 37.3
C2' C1' N9 H1' 122.1 122.9
C8 N9 C1' C4 183.3 180.3
C1' N9 C8 N7 175.4 180.1
C1' N9 C8 H8 355.5 0.1
C1' N9 C4 C5 184.2 179.7
C1' N9 C4 N3 3.7 1.2
O4' C1' H1' C2' 247.0 245.9
O4' C1' H1' N9 121.5 123.0
H1' C1' C2' H2' 170.4 160.3
C2' C1' H1' N9 234.5 237.0
H1' C1' N9 C8 219.4 146.6
H1' C1' N9 C4 36.1 326.2
C8 N9 C1' H1' 219.4 146.6
C1' N9 C8 C4 177.3 179.7
C8 N9 C4 C5 1.5 359.4
C8 N9 C4 N3 181.0 180.9
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 1.4 0.0
C4 N9 C1' H1' 36.1 326.2
C1' N9 C4 C8 182.7 180.3
C4 N9 C8 N7 358.1 0.4
C4 N9 C8 H8 178.1 180.3
N7 C5 C4 N9 359.3 0.6
C6 C5 C4 N9 179.7 180.6
C5 C4 N9 N3 180.4 178.5
C2 N3 C4 N9 180.0 187.0
N7 C8 N9 C4 358.1 0.4
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.1 179.7
C8 N7 C5 C4 359.6 359.6
H8 C8 N9 C4 178.1 180.3
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 181.4 180.1
N9 C4 C5 N7 359.3 0.6
C5 N7 C8 H8 181.4 180.1
C6 C5 N7 C4 179.5 180.1
N7 C5 C6 N6 2.2 342.1
N7 C5 C6 N1 180.5 162.1
N7 C5 C4 N3 179.7 179.4
N9 C4 C5 C6 179.7 180.6
N7 C5 C6 C4 180.5 179.9
C6 C5 C4 N3 0.1 359.3
N6 C6 C5 N1 181.8 180.0
C5 C6 N6 HN61 178.0 180.0
C5 C6 N1 CM1 180.6 209.4
C5 C6 N1 C2 0.4 29.4
N9 C4 C5 N3 179.6 181.3
N7 C5 C4 C6 179.6 180.1
C4 C5 C6 N6 181.7 162.2
C4 C5 C6 N1 359.9 342.2
C2 N3 C4 C5 359.5 8.7
N6 C6 C5 C4 181.7 162.2
C5 C6 N6 N1 178.0 180.0
N6 C6 N1 CM1 358.7 29.4
N6 C6 N1 C2 178.5 209.4
N1 C6 C5 C4 359.9 342.2
C5 C6 N1 N6 181.9 180.0
N1 C6 N6 HN61 0.0 0.0
CM1 N1 C6 C2 180.3 180.0
C6 N1 CM1 HM11 180.0 90.0
C6 N1 CM1 HM12 300.0 210.0
C6 N1 CM1 HM13 60.0 330.0
C6 N1 C2 N3 359.1 336.0
C6 N1 C2 H2 179.2 155.9
HN61 N6 C6 N1 0.0 0.0
C6 N1 CM1 C2 179.7 180.0
CM1 N1 C2 N3 178.8 156.0
CM1 N1 C2 H2 358.8 336.0
HM11 CM1 N1 HM12 240.0 240.0
HM11 CM1 N1 HM13 120.0 120.0
HM12 CM1 N1 HM13 240.0 240.0
C6 N1 C2 CM1 180.3 180.0
C2 N1 CM1 HM11 0.3 270.0
C2 N1 CM1 HM12 120.3 30.0
C2 N1 CM1 HM13 240.3 150.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.9 3.5
HM11 CM1 N1 C2 0.3 270.0
N1 CM1 HM11 HM12 120.0 120.0
N1 CM1 HM11 HM13 240.0 240.0
HM12 CM1 HM11 HM13 120.0 120.0
HM12 CM1 N1 C2 120.3 30.0
N1 CM1 HM12 HM11 240.0 240.0
N1 CM1 HM12 HM13 120.0 120.0
HM11 CM1 HM12 HM13 240.0 240.0
HM13 CM1 N1 C2 240.3 150.0
N1 CM1 HM13 HM11 120.0 120.0
N1 CM1 HM13 HM12 240.0 240.0
HM11 CM1 HM13 HM12 120.0 120.0
N9 C4 N3 C2 180.0 187.0
C5 C4 N3 C2 359.5 8.7
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.9 183.5
N9 C4 N3 C5 180.5 178.3
C4 N3 C2 H2 180.9 183.5