PDB Chemical Component 1M6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1M6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O23 |
C11 |
1.236 |
1.213 |
| C24 |
C8 |
1.545 |
1.530 |
| C11 |
N12 |
1.350 |
1.351 |
| C11 |
C10 |
1.540 |
1.512 |
| C16 |
N12 |
1.464 |
1.465 |
| C9 |
C8 |
1.549 |
1.535 |
| C9 |
C10 |
1.543 |
1.527 |
| O7 |
C8 |
1.430 |
1.428 |
| O7 |
C4 |
1.370 |
1.358 |
| N12 |
C13 |
1.365 |
1.374 |
| C8 |
C25 |
1.548 |
1.529 |
| C10 |
C5 |
1.536 |
1.503 |
| C10 |
N14 |
1.463 |
1.467 |
| C4 |
C5 |
1.419 |
1.387 |
| C4 |
C3 |
1.416 |
1.392 |
| C5 |
C6 |
1.413 |
1.382 |
| C3 |
C2 |
1.414 |
1.378 |
| C6 |
C1 |
1.419 |
1.392 |
| C22 |
C21 |
1.416 |
1.381 |
| C22 |
C15 |
1.422 |
1.394 |
| C2 |
C1 |
1.418 |
1.394 |
| C1 |
C15 |
1.413 |
1.484 |
| C21 |
C20 |
1.417 |
1.380 |
| C13 |
N14 |
1.289 |
1.298 |
| C13 |
N17 |
1.387 |
1.374 |
| C15 |
C18 |
1.416 |
1.391 |
| C20 |
C19 |
1.418 |
1.397 |
| C18 |
C19 |
1.416 |
1.394 |
| C19 |
C26 |
1.446 |
1.432 |
| C26 |
N27 |
1.156 |
1.136 |
| C2 |
H1 |
1.080 |
1.080 |
| C3 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.080 |
1.080 |
| C9 |
H4 |
1.100 |
1.091 |
| C9 |
H5 |
1.100 |
1.090 |
| C16 |
H6 |
1.100 |
1.090 |
| C16 |
H7 |
1.100 |
1.090 |
| C16 |
H8 |
1.100 |
1.090 |
| N17 |
H9 |
1.000 |
0.970 |
| N17 |
H10 |
1.000 |
0.970 |
| C18 |
H11 |
1.080 |
1.080 |
| C20 |
H12 |
1.080 |
1.080 |
| C21 |
H13 |
1.080 |
1.080 |
| C22 |
H14 |
1.080 |
1.080 |
| C24 |
H15 |
1.100 |
1.090 |
| C24 |
H16 |
1.100 |
1.090 |
| C24 |
H17 |
1.100 |
1.091 |
| C25 |
H18 |
1.100 |
1.090 |
| C25 |
H19 |
1.100 |
1.090 |
| C25 |
H20 |
1.100 |
1.091 |
Bond Angles for 1M6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C24 |
C8 |
C25 |
109.1 |
109.6 |
| C11 |
N12 |
C13 |
107.9 |
110.6 |
| C11 |
C10 |
N14 |
100.2 |
104.3 |
| C9 |
C8 |
C25 |
110.0 |
109.6 |
| C9 |
C10 |
N14 |
111.3 |
110.5 |
| C10 |
C9 |
H4 |
108.2 |
109.9 |
| C10 |
C9 |
H5 |
108.2 |
109.6 |
| O7 |
C8 |
C25 |
110.9 |
109.7 |
| N12 |
C13 |
N14 |
113.9 |
112.7 |
| N12 |
C13 |
N17 |
119.5 |
123.6 |
| C8 |
C25 |
H18 |
109.5 |
109.5 |
| C8 |
C25 |
H19 |
109.5 |
109.5 |
| C8 |
C25 |
H20 |
109.5 |
109.4 |
| C10 |
N14 |
C13 |
109.8 |
107.4 |
| C4 |
C5 |
C6 |
119.5 |
119.9 |
| C4 |
C3 |
H2 |
120.1 |
119.8 |
| C5 |
C6 |
H3 |
119.7 |
119.9 |
| C3 |
C2 |
H1 |
119.9 |
120.1 |
| C6 |
C1 |
C15 |
119.2 |
120.2 |
| C22 |
C21 |
H13 |
120.1 |
119.8 |
| C2 |
C1 |
C15 |
121.2 |
120.1 |
| C1 |
C15 |
C18 |
120.5 |
120.0 |
| C21 |
C20 |
H12 |
120.2 |
120.0 |
| N14 |
C13 |
N17 |
126.6 |
123.6 |
| C13 |
N17 |
H9 |
120.0 |
120.0 |
| C13 |
N17 |
H10 |
120.0 |
120.0 |
| C15 |
C18 |
C19 |
119.8 |
119.7 |
| C15 |
C18 |
H11 |
120.1 |
120.1 |
| C20 |
C19 |
C26 |
119.3 |
120.1 |
| C18 |
C19 |
C26 |
120.0 |
120.1 |
| C19 |
C18 |
H11 |
120.1 |
120.2 |
| C19 |
C26 |
N27 |
178.6 |
179.9 |
| H4 |
C9 |
H5 |
109.4 |
109.7 |
| H6 |
C16 |
H7 |
109.5 |
109.4 |
| H6 |
C16 |
H8 |
109.4 |
109.4 |
| H7 |
C16 |
H8 |
109.5 |
109.5 |
| H9 |
N17 |
H10 |
120.0 |
120.0 |
| H15 |
C24 |
H16 |
109.5 |
109.5 |
| H15 |
C24 |
H17 |
109.5 |
109.4 |
| H16 |
C24 |
H17 |
109.5 |
109.5 |
| H18 |
C25 |
H19 |
109.4 |
109.5 |
| H18 |
C25 |
H20 |
109.5 |
109.4 |
| H19 |
C25 |
H20 |
109.5 |
109.4 |
Torsion Angles for 1M6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C8 |
C24 |
C25 |
239.0 |
239.5 |
| O7 |
C8 |
C24 |
C25 |
119.6 |
120.5 |
| C24 |
C8 |
C25 |
H18 |
180.0 |
180.4 |
| C24 |
C8 |
C25 |
H19 |
300.0 |
300.5 |
| C24 |
C8 |
C25 |
H20 |
60.0 |
60.4 |
| N12 |
C11 |
C10 |
N14 |
3.5 |
0.0 |
| C11 |
N12 |
C13 |
N14 |
359.8 |
360.0 |
| C11 |
N12 |
C13 |
N17 |
182.9 |
180.0 |
| C9 |
C10 |
C11 |
N14 |
117.5 |
118.7 |
| C11 |
C10 |
C9 |
H4 |
32.5 |
49.6 |
| C11 |
C10 |
C9 |
H5 |
274.0 |
289.0 |
| C11 |
C10 |
N14 |
C13 |
356.3 |
360.0 |
| C16 |
N12 |
C13 |
N17 |
4.0 |
0.1 |
| C24 |
C8 |
C9 |
C25 |
120.4 |
120.5 |
| O7 |
C8 |
C9 |
C25 |
237.5 |
240.3 |
| C9 |
C8 |
C25 |
H18 |
301.2 |
301.0 |
| C9 |
C8 |
C25 |
H19 |
61.2 |
61.1 |
| C9 |
C8 |
C25 |
H20 |
181.2 |
181.0 |
| C11 |
C10 |
C9 |
N14 |
249.6 |
245.1 |
| C10 |
C9 |
C8 |
C25 |
73.8 |
55.8 |
| C9 |
C10 |
N14 |
C13 |
239.6 |
241.4 |
| H4 |
C9 |
C10 |
H5 |
118.5 |
120.6 |
| C24 |
C8 |
O7 |
C25 |
241.5 |
239.6 |
| C9 |
C8 |
O7 |
C25 |
122.0 |
119.7 |
| O7 |
C8 |
C25 |
H18 |
63.2 |
59.9 |
| O7 |
C8 |
C25 |
H19 |
183.2 |
180.0 |
| O7 |
C8 |
C25 |
H20 |
303.2 |
300.0 |
| O7 |
C4 |
C3 |
H2 |
0.7 |
359.2 |
| C10 |
N14 |
C13 |
N12 |
2.7 |
0.0 |
| N14 |
C13 |
N12 |
N17 |
176.9 |
180.0 |
| N12 |
C13 |
N17 |
H9 |
176.5 |
0.0 |
| N12 |
C13 |
N17 |
H10 |
356.5 |
180.0 |
| H18 |
C25 |
C8 |
H19 |
240.0 |
239.9 |
| H18 |
C25 |
C8 |
H20 |
120.0 |
119.9 |
| H19 |
C25 |
C8 |
H20 |
240.0 |
240.0 |
| C10 |
C5 |
C6 |
H3 |
0.9 |
359.4 |
| N14 |
C10 |
C9 |
H4 |
142.9 |
164.5 |
| N14 |
C10 |
C9 |
H5 |
24.4 |
43.9 |
| N12 |
C13 |
N14 |
C10 |
2.7 |
0.0 |
| C10 |
N14 |
C13 |
N17 |
179.4 |
180.0 |
| C5 |
C4 |
C3 |
H2 |
179.8 |
179.9 |
| C4 |
C5 |
C6 |
H3 |
179.2 |
179.9 |
| C4 |
C3 |
C2 |
H1 |
179.8 |
180.0 |
| C5 |
C6 |
C1 |
C15 |
179.5 |
179.7 |
| C3 |
C2 |
C1 |
C15 |
181.0 |
180.0 |
| C2 |
C1 |
C6 |
C15 |
181.0 |
179.7 |
| C6 |
C1 |
C15 |
C18 |
37.0 |
179.7 |
| C22 |
C21 |
C20 |
H12 |
180.1 |
179.8 |
| C22 |
C15 |
C18 |
H11 |
179.1 |
180.3 |
| C6 |
C1 |
C2 |
C15 |
179.0 |
180.3 |
| C2 |
C1 |
C15 |
C18 |
216.0 |
360.0 |
| C1 |
C15 |
C18 |
C19 |
181.1 |
179.9 |
| C1 |
C15 |
C18 |
H11 |
1.1 |
360.0 |
| C21 |
C20 |
C19 |
C26 |
181.2 |
180.1 |
| N12 |
C13 |
N14 |
N17 |
183.3 |
180.0 |
| N14 |
C13 |
N17 |
H9 |
0.0 |
180.0 |
| N14 |
C13 |
N17 |
H10 |
180.0 |
0.0 |
| N12 |
C13 |
N17 |
N14 |
176.5 |
180.0 |
| H9 |
N17 |
C13 |
H10 |
180.0 |
180.0 |
| C15 |
C18 |
C19 |
C26 |
179.2 |
179.9 |
| C19 |
C18 |
C15 |
H11 |
180.0 |
179.9 |
| C18 |
C19 |
C20 |
C26 |
178.9 |
179.9 |
| C20 |
C19 |
C18 |
H11 |
180.4 |
180.0 |
| C20 |
C19 |
C26 |
N27 |
200.3 |
258.3 |
| C15 |
C18 |
C19 |
H11 |
180.0 |
180.1 |
| C20 |
C19 |
C18 |
C26 |
181.1 |
180.1 |
| C18 |
C19 |
C26 |
N27 |
21.4 |
78.5 |
| C26 |
C19 |
C18 |
H11 |
359.2 |
359.9 |
| H1 |
C2 |
C1 |
C15 |
1.0 |
0.0 |
| H2 |
C3 |
C2 |
H1 |
359.8 |
0.0 |
| H3 |
C6 |
C1 |
C15 |
359.5 |
0.3 |
| H4 |
C9 |
C8 |
C25 |
194.5 |
175.7 |
| H4 |
C9 |
C10 |
N14 |
142.9 |
164.5 |
| C10 |
C9 |
H4 |
H5 |
242.3 |
239.4 |
| H5 |
C9 |
C8 |
C25 |
313.0 |
296.3 |
| H5 |
C9 |
C10 |
N14 |
24.4 |
43.9 |
| C10 |
C9 |
H5 |
H4 |
117.7 |
120.8 |
| H7 |
C16 |
H6 |
H8 |
120.1 |
120.0 |
| H6 |
C16 |
H7 |
H8 |
240.0 |
240.1 |
| H6 |
C16 |
H8 |
H7 |
120.0 |
119.9 |
| C13 |
N17 |
H9 |
H10 |
180.0 |
180.0 |
| C13 |
N17 |
H10 |
H9 |
180.0 |
180.0 |
| C15 |
C18 |
H11 |
C19 |
180.0 |
179.9 |
| H11 |
C18 |
C19 |
C26 |
359.2 |
359.9 |
| H12 |
C20 |
C19 |
C26 |
1.2 |
0.0 |
| H13 |
C21 |
C20 |
H12 |
0.1 |
360.0 |
| H14 |
C22 |
C21 |
H13 |
359.3 |
359.8 |
| H15 |
C24 |
C8 |
C25 |
301.0 |
299.5 |
| H16 |
C24 |
H15 |
H17 |
120.0 |
120.0 |
| H16 |
C24 |
C8 |
C25 |
61.0 |
59.5 |
| H15 |
C24 |
H16 |
H17 |
240.0 |
240.0 |
| H17 |
C24 |
C8 |
C25 |
181.0 |
179.6 |
| H15 |
C24 |
H17 |
H16 |
120.0 |
120.0 |
| C8 |
C25 |
H18 |
H19 |
120.0 |
120.1 |
| C8 |
C25 |
H18 |
H20 |
240.0 |
240.1 |
| H19 |
C25 |
H18 |
H20 |
120.0 |
120.0 |
| C8 |
C25 |
H19 |
H18 |
240.0 |
239.9 |
| C8 |
C25 |
H19 |
H20 |
120.0 |
120.0 |
| H18 |
C25 |
H19 |
H20 |
240.0 |
240.1 |
| C8 |
C25 |
H20 |
H18 |
120.0 |
120.0 |
| C8 |
C25 |
H20 |
H19 |
240.0 |
240.0 |
| H18 |
C25 |
H20 |
H19 |
119.9 |
120.0 |