PDB Chemical Component 1M5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1M5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O19 |
C14 |
1.235 |
1.213 |
C12 |
C8 |
1.541 |
1.530 |
C14 |
N15 |
1.349 |
1.351 |
C14 |
C10 |
1.537 |
1.512 |
C20 |
N15 |
1.463 |
1.465 |
C9 |
C8 |
1.543 |
1.535 |
C9 |
C10 |
1.546 |
1.528 |
N15 |
C16 |
1.365 |
1.374 |
O7 |
C8 |
1.431 |
1.428 |
O7 |
C4 |
1.378 |
1.358 |
C8 |
C13 |
1.549 |
1.530 |
C10 |
C5 |
1.530 |
1.503 |
C10 |
N17 |
1.454 |
1.467 |
C4 |
C5 |
1.418 |
1.387 |
C4 |
C3 |
1.414 |
1.392 |
C5 |
C6 |
1.417 |
1.383 |
C3 |
C2 |
1.417 |
1.377 |
C6 |
C1 |
1.418 |
1.392 |
C2 |
C1 |
1.419 |
1.394 |
C16 |
N17 |
1.290 |
1.298 |
C16 |
N18 |
1.379 |
1.374 |
C25 |
C24 |
1.417 |
1.379 |
C25 |
C11 |
1.422 |
1.394 |
C1 |
C11 |
1.415 |
1.484 |
C24 |
C23 |
1.417 |
1.383 |
C11 |
C21 |
1.416 |
1.392 |
C23 |
C22 |
1.419 |
1.384 |
C21 |
C22 |
1.416 |
1.382 |
C22 |
CL1 |
1.717 |
1.736 |
C2 |
H1 |
1.080 |
1.080 |
C3 |
H2 |
1.080 |
1.080 |
C6 |
H3 |
1.080 |
1.079 |
C9 |
H4 |
1.100 |
1.090 |
C9 |
H5 |
1.100 |
1.090 |
C12 |
H6 |
1.100 |
1.090 |
C12 |
H7 |
1.100 |
1.090 |
C12 |
H8 |
1.100 |
1.090 |
C13 |
H9 |
1.100 |
1.090 |
C13 |
H10 |
1.100 |
1.091 |
C13 |
H11 |
1.100 |
1.090 |
N18 |
H12 |
1.000 |
0.971 |
N18 |
H13 |
1.000 |
0.970 |
C20 |
H14 |
1.100 |
1.090 |
C20 |
H15 |
1.100 |
1.090 |
C20 |
H16 |
1.100 |
1.090 |
C21 |
H17 |
1.080 |
1.080 |
C23 |
H18 |
1.080 |
1.080 |
C24 |
H19 |
1.080 |
1.080 |
C25 |
H20 |
1.080 |
1.080 |
Bond Angles for 1M5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C8 |
C13 |
109.9 |
109.6 |
C14 |
N15 |
C16 |
107.5 |
110.6 |
C14 |
C10 |
N17 |
100.6 |
104.4 |
C9 |
C8 |
C13 |
111.4 |
109.7 |
C9 |
C10 |
N17 |
111.9 |
110.5 |
C10 |
C9 |
H4 |
108.5 |
109.9 |
C10 |
C9 |
H5 |
108.4 |
109.6 |
N15 |
C16 |
N17 |
114.2 |
112.7 |
N15 |
C16 |
N18 |
119.8 |
123.6 |
O7 |
C8 |
C13 |
109.3 |
109.6 |
C8 |
C13 |
H9 |
109.5 |
109.5 |
C8 |
C13 |
H10 |
109.5 |
109.5 |
C8 |
C13 |
H11 |
109.5 |
109.5 |
C10 |
N17 |
C16 |
109.6 |
107.4 |
C4 |
C5 |
C6 |
120.1 |
119.9 |
C4 |
C3 |
H2 |
120.0 |
119.8 |
C5 |
C6 |
H3 |
119.9 |
119.9 |
C3 |
C2 |
H1 |
119.8 |
120.1 |
C6 |
C1 |
C11 |
119.6 |
120.1 |
C2 |
C1 |
C11 |
120.9 |
120.1 |
N17 |
C16 |
N18 |
126.0 |
123.6 |
C16 |
N18 |
H12 |
120.0 |
120.0 |
C16 |
N18 |
H13 |
120.0 |
120.0 |
C25 |
C24 |
H19 |
120.1 |
119.9 |
C1 |
C11 |
C21 |
120.4 |
120.1 |
C24 |
C23 |
H18 |
120.2 |
119.9 |
C11 |
C21 |
C22 |
119.8 |
119.9 |
C11 |
C21 |
H17 |
120.1 |
120.1 |
C23 |
C22 |
CL1 |
120.3 |
120.0 |
C21 |
C22 |
CL1 |
119.0 |
120.0 |
C22 |
C21 |
H17 |
120.1 |
120.0 |
H4 |
C9 |
H5 |
109.5 |
109.8 |
H6 |
C12 |
H7 |
109.5 |
109.4 |
H6 |
C12 |
H8 |
109.4 |
109.5 |
H7 |
C12 |
H8 |
109.4 |
109.5 |
H9 |
C13 |
H10 |
109.5 |
109.4 |
H9 |
C13 |
H11 |
109.5 |
109.5 |
H10 |
C13 |
H11 |
109.4 |
109.4 |
H12 |
N18 |
H13 |
120.0 |
120.0 |
H14 |
C20 |
H15 |
109.5 |
109.5 |
H14 |
C20 |
H16 |
109.4 |
109.5 |
H15 |
C20 |
H16 |
109.4 |
109.5 |
Torsion Angles for 1M5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C9 |
C8 |
C12 |
C13 |
237.0 |
239.4 |
O7 |
C8 |
C12 |
C13 |
118.6 |
120.4 |
C12 |
C8 |
C13 |
H9 |
180.0 |
180.4 |
C12 |
C8 |
C13 |
H10 |
300.0 |
300.4 |
C12 |
C8 |
C13 |
H11 |
60.0 |
60.3 |
N15 |
C14 |
C10 |
N17 |
1.3 |
0.0 |
C14 |
N15 |
C16 |
N17 |
0.5 |
0.0 |
C14 |
N15 |
C16 |
N18 |
179.6 |
180.0 |
C9 |
C10 |
C14 |
N17 |
118.0 |
118.7 |
C14 |
C10 |
C9 |
H4 |
34.7 |
49.7 |
C14 |
C10 |
C9 |
H5 |
275.8 |
288.9 |
C14 |
C10 |
N17 |
C16 |
359.0 |
360.0 |
C12 |
C8 |
C9 |
C13 |
122.1 |
120.5 |
O7 |
C8 |
C9 |
C13 |
239.3 |
240.3 |
C9 |
C8 |
C13 |
H9 |
302.1 |
301.1 |
C9 |
C8 |
C13 |
H10 |
62.1 |
61.0 |
C9 |
C8 |
C13 |
H11 |
182.1 |
181.0 |
C14 |
C10 |
C9 |
N17 |
249.3 |
245.1 |
C10 |
C9 |
C8 |
C13 |
68.8 |
55.8 |
C9 |
C10 |
N17 |
C16 |
242.6 |
241.4 |
H4 |
C9 |
C10 |
H5 |
118.8 |
120.8 |
C10 |
N17 |
C16 |
N15 |
0.4 |
0.0 |
N17 |
C16 |
N15 |
N18 |
181.0 |
180.0 |
N15 |
C16 |
N18 |
H12 |
181.1 |
0.1 |
N15 |
C16 |
N18 |
H13 |
1.1 |
180.0 |
C12 |
C8 |
O7 |
C13 |
240.9 |
239.6 |
C9 |
C8 |
O7 |
C13 |
122.0 |
119.7 |
O7 |
C8 |
C13 |
H9 |
62.7 |
60.1 |
O7 |
C8 |
C13 |
H10 |
182.7 |
180.0 |
O7 |
C8 |
C13 |
H11 |
302.7 |
300.0 |
O7 |
C4 |
C3 |
H2 |
0.4 |
359.2 |
H9 |
C13 |
C8 |
H10 |
240.0 |
240.0 |
H9 |
C13 |
C8 |
H11 |
120.0 |
120.1 |
H10 |
C13 |
C8 |
H11 |
240.0 |
240.0 |
C10 |
C5 |
C6 |
H3 |
1.3 |
359.5 |
N17 |
C10 |
C9 |
H4 |
145.4 |
164.6 |
N17 |
C10 |
C9 |
H5 |
26.6 |
43.8 |
N15 |
C16 |
N17 |
C10 |
0.4 |
0.0 |
C10 |
N17 |
C16 |
N18 |
181.4 |
180.0 |
C5 |
C4 |
C3 |
H2 |
179.7 |
179.9 |
C4 |
C5 |
C6 |
H3 |
179.6 |
179.9 |
C4 |
C3 |
C2 |
H1 |
180.1 |
180.1 |
C5 |
C6 |
C1 |
C11 |
179.0 |
179.7 |
C3 |
C2 |
C1 |
C11 |
181.2 |
180.0 |
C2 |
C1 |
C6 |
C11 |
181.3 |
179.7 |
C6 |
C1 |
C11 |
C21 |
35.8 |
179.8 |
C6 |
C1 |
C2 |
C11 |
178.7 |
180.3 |
C2 |
C1 |
C11 |
C21 |
214.5 |
0.1 |
N15 |
C16 |
N17 |
N18 |
178.9 |
180.0 |
N17 |
C16 |
N18 |
H12 |
0.0 |
180.1 |
N17 |
C16 |
N18 |
H13 |
180.0 |
360.0 |
N15 |
C16 |
N18 |
N17 |
181.1 |
180.0 |
H12 |
N18 |
C16 |
H13 |
180.0 |
180.1 |
C25 |
C24 |
C23 |
H18 |
179.9 |
179.7 |
C25 |
C11 |
C21 |
H17 |
179.5 |
180.3 |
C1 |
C11 |
C21 |
C22 |
181.7 |
180.0 |
C1 |
C11 |
C21 |
H17 |
1.7 |
359.9 |
C24 |
C23 |
C22 |
CL1 |
180.3 |
180.0 |
C11 |
C21 |
C22 |
CL1 |
179.9 |
180.0 |
C22 |
C21 |
C11 |
H17 |
180.0 |
180.1 |
C21 |
C22 |
C23 |
CL1 |
180.0 |
180.1 |
C23 |
C22 |
C21 |
H17 |
179.9 |
180.0 |
C11 |
C21 |
C22 |
H17 |
180.0 |
179.9 |
C23 |
C22 |
C21 |
CL1 |
180.0 |
179.9 |
CL1 |
C22 |
C21 |
H17 |
359.9 |
0.1 |
H1 |
C2 |
C1 |
C11 |
1.2 |
360.0 |
H2 |
C3 |
C2 |
H1 |
0.2 |
0.1 |
H3 |
C6 |
C1 |
C11 |
359.0 |
0.2 |
H4 |
C9 |
C8 |
C13 |
189.4 |
175.6 |
H4 |
C9 |
C10 |
N17 |
145.4 |
164.6 |
C10 |
C9 |
H4 |
H5 |
241.8 |
239.3 |
H5 |
C9 |
C8 |
C13 |
308.2 |
296.3 |
H5 |
C9 |
C10 |
N17 |
26.6 |
43.8 |
C10 |
C9 |
H5 |
H4 |
118.2 |
120.9 |
H6 |
C12 |
C8 |
C13 |
303.0 |
299.7 |
H7 |
C12 |
H6 |
H8 |
120.0 |
120.0 |
H7 |
C12 |
C8 |
C13 |
63.0 |
59.6 |
H6 |
C12 |
H7 |
H8 |
240.0 |
240.0 |
H8 |
C12 |
C8 |
C13 |
183.0 |
179.6 |
H6 |
C12 |
H8 |
H7 |
120.0 |
120.0 |
C8 |
C13 |
H9 |
H10 |
120.0 |
120.0 |
C8 |
C13 |
H9 |
H11 |
240.0 |
239.9 |
H10 |
C13 |
H9 |
H11 |
120.0 |
119.9 |
C8 |
C13 |
H10 |
H9 |
240.0 |
240.0 |
C8 |
C13 |
H10 |
H11 |
120.0 |
120.0 |
H9 |
C13 |
H10 |
H11 |
240.0 |
240.0 |
C8 |
C13 |
H11 |
H9 |
120.0 |
120.1 |
C8 |
C13 |
H11 |
H10 |
240.0 |
240.0 |
H9 |
C13 |
H11 |
H10 |
120.0 |
119.9 |
C16 |
N18 |
H12 |
H13 |
180.0 |
179.9 |
C16 |
N18 |
H13 |
H12 |
180.0 |
180.1 |
H15 |
C20 |
H14 |
H16 |
119.9 |
120.0 |
H14 |
C20 |
H15 |
H16 |
240.1 |
240.0 |
H14 |
C20 |
H16 |
H15 |
119.9 |
120.0 |
C11 |
C21 |
H17 |
C22 |
180.0 |
180.1 |
H17 |
C21 |
C22 |
CL1 |
359.9 |
0.1 |
H18 |
C23 |
C22 |
CL1 |
0.4 |
359.9 |
H19 |
C24 |
C23 |
H18 |
360.0 |
0.1 |
H20 |
C25 |
C24 |
H19 |
359.4 |
359.6 |