PDB Chemical Component 1M5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1M5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O19 C14 1.235 1.213
C12 C8 1.541 1.530
C14 N15 1.349 1.351
C14 C10 1.537 1.512
C20 N15 1.463 1.465
C9 C8 1.543 1.535
C9 C10 1.546 1.528
N15 C16 1.365 1.374
O7 C8 1.431 1.428
O7 C4 1.378 1.358
C8 C13 1.549 1.530
C10 C5 1.530 1.503
C10 N17 1.454 1.467
C4 C5 1.418 1.387
C4 C3 1.414 1.392
C5 C6 1.417 1.383
C3 C2 1.417 1.377
C6 C1 1.418 1.392
C2 C1 1.419 1.394
C16 N17 1.290 1.298
C16 N18 1.379 1.374
C25 C24 1.417 1.379
C25 C11 1.422 1.394
C1 C11 1.415 1.484
C24 C23 1.417 1.383
C11 C21 1.416 1.392
C23 C22 1.419 1.384
C21 C22 1.416 1.382
C22 CL1 1.717 1.736
C2 H1 1.080 1.080
C3 H2 1.080 1.080
C6 H3 1.080 1.079
C9 H4 1.100 1.090
C9 H5 1.100 1.090
C12 H6 1.100 1.090
C12 H7 1.100 1.090
C12 H8 1.100 1.090
C13 H9 1.100 1.090
C13 H10 1.100 1.091
C13 H11 1.100 1.090
N18 H12 1.000 0.971
N18 H13 1.000 0.970
C20 H14 1.100 1.090
C20 H15 1.100 1.090
C20 H16 1.100 1.090
C21 H17 1.080 1.080
C23 H18 1.080 1.080
C24 H19 1.080 1.080
C25 H20 1.080 1.080

Bond Angles for 1M5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C12 C8 C13 109.9 109.6
C14 N15 C16 107.5 110.6
C14 C10 N17 100.6 104.4
C9 C8 C13 111.4 109.7
C9 C10 N17 111.9 110.5
C10 C9 H4 108.5 109.9
C10 C9 H5 108.4 109.6
N15 C16 N17 114.2 112.7
N15 C16 N18 119.8 123.6
O7 C8 C13 109.3 109.6
C8 C13 H9 109.5 109.5
C8 C13 H10 109.5 109.5
C8 C13 H11 109.5 109.5
C10 N17 C16 109.6 107.4
C4 C5 C6 120.1 119.9
C4 C3 H2 120.0 119.8
C5 C6 H3 119.9 119.9
C3 C2 H1 119.8 120.1
C6 C1 C11 119.6 120.1
C2 C1 C11 120.9 120.1
N17 C16 N18 126.0 123.6
C16 N18 H12 120.0 120.0
C16 N18 H13 120.0 120.0
C25 C24 H19 120.1 119.9
C1 C11 C21 120.4 120.1
C24 C23 H18 120.2 119.9
C11 C21 C22 119.8 119.9
C11 C21 H17 120.1 120.1
C23 C22 CL1 120.3 120.0
C21 C22 CL1 119.0 120.0
C22 C21 H17 120.1 120.0
H4 C9 H5 109.5 109.8
H6 C12 H7 109.5 109.4
H6 C12 H8 109.4 109.5
H7 C12 H8 109.4 109.5
H9 C13 H10 109.5 109.4
H9 C13 H11 109.5 109.5
H10 C13 H11 109.4 109.4
H12 N18 H13 120.0 120.0
H14 C20 H15 109.5 109.5
H14 C20 H16 109.4 109.5
H15 C20 H16 109.4 109.5

Torsion Angles for 1M5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C9 C8 C12 C13 237.0 239.4
O7 C8 C12 C13 118.6 120.4
C12 C8 C13 H9 180.0 180.4
C12 C8 C13 H10 300.0 300.4
C12 C8 C13 H11 60.0 60.3
N15 C14 C10 N17 1.3 0.0
C14 N15 C16 N17 0.5 0.0
C14 N15 C16 N18 179.6 180.0
C9 C10 C14 N17 118.0 118.7
C14 C10 C9 H4 34.7 49.7
C14 C10 C9 H5 275.8 288.9
C14 C10 N17 C16 359.0 360.0
C12 C8 C9 C13 122.1 120.5
O7 C8 C9 C13 239.3 240.3
C9 C8 C13 H9 302.1 301.1
C9 C8 C13 H10 62.1 61.0
C9 C8 C13 H11 182.1 181.0
C14 C10 C9 N17 249.3 245.1
C10 C9 C8 C13 68.8 55.8
C9 C10 N17 C16 242.6 241.4
H4 C9 C10 H5 118.8 120.8
C10 N17 C16 N15 0.4 0.0
N17 C16 N15 N18 181.0 180.0
N15 C16 N18 H12 181.1 0.1
N15 C16 N18 H13 1.1 180.0
C12 C8 O7 C13 240.9 239.6
C9 C8 O7 C13 122.0 119.7
O7 C8 C13 H9 62.7 60.1
O7 C8 C13 H10 182.7 180.0
O7 C8 C13 H11 302.7 300.0
O7 C4 C3 H2 0.4 359.2
H9 C13 C8 H10 240.0 240.0
H9 C13 C8 H11 120.0 120.1
H10 C13 C8 H11 240.0 240.0
C10 C5 C6 H3 1.3 359.5
N17 C10 C9 H4 145.4 164.6
N17 C10 C9 H5 26.6 43.8
N15 C16 N17 C10 0.4 0.0
C10 N17 C16 N18 181.4 180.0
C5 C4 C3 H2 179.7 179.9
C4 C5 C6 H3 179.6 179.9
C4 C3 C2 H1 180.1 180.1
C5 C6 C1 C11 179.0 179.7
C3 C2 C1 C11 181.2 180.0
C2 C1 C6 C11 181.3 179.7
C6 C1 C11 C21 35.8 179.8
C6 C1 C2 C11 178.7 180.3
C2 C1 C11 C21 214.5 0.1
N15 C16 N17 N18 178.9 180.0
N17 C16 N18 H12 0.0 180.1
N17 C16 N18 H13 180.0 360.0
N15 C16 N18 N17 181.1 180.0
H12 N18 C16 H13 180.0 180.1
C25 C24 C23 H18 179.9 179.7
C25 C11 C21 H17 179.5 180.3
C1 C11 C21 C22 181.7 180.0
C1 C11 C21 H17 1.7 359.9
C24 C23 C22 CL1 180.3 180.0
C11 C21 C22 CL1 179.9 180.0
C22 C21 C11 H17 180.0 180.1
C21 C22 C23 CL1 180.0 180.1
C23 C22 C21 H17 179.9 180.0
C11 C21 C22 H17 180.0 179.9
C23 C22 C21 CL1 180.0 179.9
CL1 C22 C21 H17 359.9 0.1
H1 C2 C1 C11 1.2 360.0
H2 C3 C2 H1 0.2 0.1
H3 C6 C1 C11 359.0 0.2
H4 C9 C8 C13 189.4 175.6
H4 C9 C10 N17 145.4 164.6
C10 C9 H4 H5 241.8 239.3
H5 C9 C8 C13 308.2 296.3
H5 C9 C10 N17 26.6 43.8
C10 C9 H5 H4 118.2 120.9
H6 C12 C8 C13 303.0 299.7
H7 C12 H6 H8 120.0 120.0
H7 C12 C8 C13 63.0 59.6
H6 C12 H7 H8 240.0 240.0
H8 C12 C8 C13 183.0 179.6
H6 C12 H8 H7 120.0 120.0
C8 C13 H9 H10 120.0 120.0
C8 C13 H9 H11 240.0 239.9
H10 C13 H9 H11 120.0 119.9
C8 C13 H10 H9 240.0 240.0
C8 C13 H10 H11 120.0 120.0
H9 C13 H10 H11 240.0 240.0
C8 C13 H11 H9 120.0 120.1
C8 C13 H11 H10 240.0 240.0
H9 C13 H11 H10 120.0 119.9
C16 N18 H12 H13 180.0 179.9
C16 N18 H13 H12 180.0 180.1
H15 C20 H14 H16 119.9 120.0
H14 C20 H15 H16 240.1 240.0
H14 C20 H16 H15 119.9 120.0
C11 C21 H17 C22 180.0 180.1
H17 C21 C22 CL1 359.9 0.1
H18 C23 C22 CL1 0.4 359.9
H19 C24 C23 H18 360.0 0.1
H20 C25 C24 H19 359.4 359.6