Atom Nomenclature for 1LI

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1LI

Atom Name (V3) Atom Name (V2)
C4 C4
C7 C7
C8 C8
C10 C10
C13 C13
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
C26 C26
C28 C28
F16 F16
C14 C14
C12 C12
C11 C11
F15 F15
C9 C9
C31 C31
N6 N6
O5 O5
C3 C3
O18 O18
N19 N19
C34 C34
C33 C33
C32 C32
C23 C23
C27 C27
C25 C25
C29 C29
C30 C30
C2 C2
C1 C1
H7 H7
H8 H8
H8A H8A
H10 H10
H17 H17
H17A H17A
H21 H21
H21A H21A
H22 H22
H22A H22A
H26 H26
H28 H28
H14 H14
H12 H12
H31 H31
HN6 HN6
H3 H3
H3A H3A
H3B H3B
HO18 HO18
HN19 HN19
H34 H34
H34A H34A
H33 H33
H33A H33A
H32 H32
H32A H32A
H23 H23
H25 H25
H30 H30
H30A H30A
H30B H30B
H2 H2
H2A H2A
H2B H2B
H1 H1
H1A H1A
H1B H1B