PDB Chemical Component 1K0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1K0
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C5 |
O2 |
1.438 |
1.429 |
O2 |
C4 |
1.375 |
1.357 |
C3 |
C4 |
1.366 |
1.382 |
C3 |
C2 |
1.389 |
1.392 |
O1 |
C2 |
1.338 |
1.357 |
O1 |
C1 |
1.444 |
1.429 |
C4 |
C6 |
1.422 |
1.400 |
C2 |
C20 |
1.377 |
1.383 |
C6 |
C19 |
1.436 |
1.415 |
C6 |
C7 |
1.419 |
1.466 |
C20 |
C19 |
1.366 |
1.395 |
O5 |
C7 |
1.235 |
1.218 |
C19 |
N2 |
1.409 |
1.355 |
C7 |
N1 |
1.390 |
1.353 |
N2 |
C8 |
1.317 |
1.309 |
N1 |
C8 |
1.368 |
1.369 |
C8 |
C9 |
1.492 |
1.477 |
C9 |
C18 |
1.323 |
1.397 |
C9 |
C10 |
1.406 |
1.397 |
C18 |
C16 |
1.387 |
1.378 |
C10 |
C11 |
1.392 |
1.378 |
C16 |
C17 |
1.512 |
1.507 |
C16 |
C13 |
1.412 |
1.389 |
C11 |
C13 |
1.373 |
1.390 |
C11 |
C12 |
1.471 |
1.507 |
C13 |
O3 |
1.391 |
1.358 |
O3 |
C14 |
1.442 |
1.428 |
C14 |
C15 |
1.513 |
1.530 |
O4 |
C15 |
1.388 |
1.429 |
C1 |
H1 |
1.099 |
1.091 |
C1 |
H2 |
1.100 |
1.089 |
C1 |
H3 |
1.100 |
1.090 |
C3 |
H4 |
1.080 |
1.081 |
N1 |
H5 |
1.000 |
0.970 |
C5 |
H6 |
1.101 |
1.089 |
C5 |
H7 |
1.100 |
1.090 |
C5 |
H8 |
1.100 |
1.090 |
O4 |
H9 |
0.950 |
0.967 |
C18 |
H10 |
1.079 |
1.079 |
C17 |
H11 |
1.100 |
1.090 |
C17 |
H12 |
1.101 |
1.090 |
C17 |
H13 |
1.100 |
1.091 |
C14 |
H14 |
1.100 |
1.089 |
C14 |
H15 |
1.100 |
1.091 |
C15 |
H16 |
1.100 |
1.090 |
C15 |
H17 |
1.100 |
1.091 |
C12 |
H18 |
1.099 |
1.090 |
C12 |
H19 |
1.100 |
1.090 |
C12 |
H20 |
1.101 |
1.090 |
C10 |
H21 |
1.080 |
1.080 |
C20 |
H22 |
1.080 |
1.080 |
Bond Angles for 1K0
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C5 |
H6 |
109.5 |
109.5 |
O2 |
C5 |
H7 |
109.5 |
109.4 |
O2 |
C5 |
H8 |
109.5 |
109.5 |
O2 |
C4 |
C6 |
115.9 |
120.2 |
C3 |
C4 |
C6 |
121.5 |
119.5 |
C4 |
C3 |
H4 |
119.7 |
119.7 |
C3 |
C2 |
C20 |
120.3 |
120.8 |
C1 |
O1 |
C2 |
118.2 |
117.0 |
O1 |
C2 |
C20 |
124.3 |
119.6 |
O1 |
C1 |
H1 |
109.5 |
109.4 |
O1 |
C1 |
H2 |
109.5 |
109.5 |
O1 |
C1 |
H3 |
109.5 |
109.5 |
C4 |
C6 |
C19 |
115.3 |
120.0 |
C4 |
C6 |
C7 |
125.0 |
121.7 |
C2 |
C20 |
C19 |
119.7 |
119.8 |
C2 |
C20 |
H22 |
120.1 |
120.1 |
C7 |
C6 |
C19 |
119.8 |
118.2 |
C6 |
C19 |
N2 |
119.5 |
119.2 |
C7 |
N1 |
C8 |
122.8 |
120.5 |
C7 |
N1 |
H5 |
118.6 |
119.8 |
N1 |
C8 |
N2 |
122.8 |
123.0 |
N2 |
C8 |
C9 |
119.5 |
118.5 |
N1 |
C8 |
C9 |
117.6 |
118.5 |
C8 |
N1 |
H5 |
118.6 |
119.7 |
C8 |
C9 |
C18 |
123.4 |
120.0 |
C8 |
C9 |
C10 |
117.2 |
120.1 |
C18 |
C9 |
C10 |
119.4 |
119.9 |
C9 |
C18 |
C16 |
123.0 |
119.9 |
C9 |
C18 |
H10 |
118.5 |
120.1 |
C9 |
C10 |
C11 |
120.9 |
119.9 |
C9 |
C10 |
H21 |
119.6 |
120.1 |
C18 |
C16 |
C17 |
122.4 |
119.9 |
C18 |
C16 |
C13 |
116.3 |
120.1 |
C16 |
C18 |
H10 |
118.5 |
120.0 |
C17 |
C16 |
C13 |
121.1 |
120.0 |
C16 |
C17 |
H11 |
109.5 |
109.5 |
C16 |
C17 |
H12 |
109.4 |
109.5 |
C16 |
C17 |
H13 |
109.4 |
109.5 |
C11 |
C12 |
H18 |
109.5 |
109.5 |
C11 |
C12 |
H19 |
109.5 |
109.4 |
C11 |
C12 |
H20 |
109.5 |
109.4 |
C13 |
O3 |
C14 |
113.7 |
117.0 |
O3 |
C14 |
C15 |
110.6 |
109.5 |
O3 |
C14 |
H14 |
109.2 |
109.5 |
O3 |
C14 |
H15 |
109.2 |
109.5 |
O4 |
C15 |
C14 |
106.0 |
109.4 |
C15 |
C14 |
H14 |
109.2 |
109.5 |
C15 |
C14 |
H15 |
109.2 |
109.4 |
C14 |
C15 |
H16 |
110.3 |
109.5 |
C14 |
C15 |
H17 |
110.3 |
109.5 |
C15 |
O4 |
H9 |
109.5 |
114.0 |
O4 |
C15 |
H16 |
110.3 |
109.5 |
O4 |
C15 |
H17 |
110.3 |
109.5 |
H1 |
C1 |
H2 |
109.5 |
109.5 |
H1 |
C1 |
H3 |
109.4 |
109.4 |
H2 |
C1 |
H3 |
109.5 |
109.5 |
H6 |
C5 |
H7 |
109.5 |
109.4 |
H6 |
C5 |
H8 |
109.5 |
109.6 |
H7 |
C5 |
H8 |
109.4 |
109.5 |
H11 |
C17 |
H12 |
109.5 |
109.5 |
H11 |
C17 |
H13 |
109.5 |
109.4 |
H12 |
C17 |
H13 |
109.5 |
109.4 |
H14 |
C14 |
H15 |
109.5 |
109.5 |
H16 |
C15 |
H17 |
109.5 |
109.5 |
H18 |
C12 |
H19 |
109.4 |
109.5 |
H18 |
C12 |
H20 |
109.5 |
109.5 |
H19 |
C12 |
H20 |
109.4 |
109.5 |
Torsion Angles for 1K0
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
O2 |
C4 |
C6 |
169.2 |
180.0 |
H6 |
C5 |
O2 |
H7 |
240.0 |
240.1 |
H6 |
C5 |
O2 |
H8 |
120.0 |
120.1 |
H7 |
C5 |
O2 |
H8 |
240.1 |
240.1 |
C3 |
C4 |
O2 |
C6 |
183.0 |
180.0 |
O2 |
C4 |
C3 |
H4 |
356.0 |
360.0 |
O2 |
C4 |
C6 |
C19 |
186.4 |
180.0 |
O2 |
C4 |
C6 |
C7 |
6.4 |
0.0 |
O2 |
C4 |
C3 |
C6 |
176.9 |
180.0 |
C4 |
C3 |
C2 |
C20 |
358.9 |
0.2 |
C3 |
C4 |
C6 |
C19 |
3.4 |
360.0 |
C3 |
C4 |
C6 |
C7 |
183.5 |
180.0 |
O1 |
C2 |
C3 |
C20 |
179.6 |
179.8 |
C3 |
C2 |
C20 |
C19 |
0.1 |
359.5 |
C3 |
C2 |
C20 |
H22 |
180.1 |
179.8 |
C3 |
C2 |
O1 |
C20 |
180.4 |
180.2 |
C2 |
O1 |
C1 |
H1 |
180.0 |
300.0 |
C2 |
O1 |
C1 |
H2 |
300.0 |
60.0 |
C2 |
O1 |
C1 |
H3 |
60.0 |
180.1 |
O1 |
C2 |
C20 |
C19 |
180.5 |
179.7 |
O1 |
C2 |
C20 |
H22 |
0.5 |
360.0 |
C1 |
O1 |
C2 |
C20 |
1.9 |
180.0 |
H1 |
C1 |
O1 |
H2 |
240.0 |
240.0 |
H1 |
C1 |
O1 |
H3 |
120.0 |
120.0 |
H2 |
C1 |
O1 |
H3 |
240.0 |
239.9 |
C6 |
C4 |
C3 |
H4 |
179.2 |
180.0 |
C7 |
C6 |
C4 |
C19 |
180.0 |
180.1 |
C4 |
C6 |
C19 |
N2 |
177.7 |
180.1 |
C4 |
C6 |
C19 |
C7 |
180.0 |
180.1 |
C2 |
C20 |
C19 |
C6 |
2.7 |
0.5 |
C4 |
C6 |
C7 |
C19 |
180.0 |
179.9 |
C7 |
C6 |
C19 |
N2 |
357.6 |
0.0 |
C6 |
C7 |
N1 |
C8 |
354.9 |
360.0 |
C6 |
C7 |
N1 |
H5 |
174.9 |
179.9 |
C2 |
C20 |
C19 |
H22 |
180.0 |
180.3 |
O5 |
C7 |
C6 |
C19 |
186.4 |
180.0 |
O5 |
C7 |
N1 |
H5 |
353.5 |
360.0 |
C2 |
C20 |
C19 |
N2 |
180.7 |
180.2 |
C4 |
C6 |
C7 |
N1 |
184.8 |
180.0 |
C7 |
N1 |
C8 |
N2 |
2.7 |
0.0 |
C7 |
N1 |
C8 |
C9 |
184.1 |
180.0 |
C8 |
N1 |
C7 |
H5 |
180.0 |
180.0 |
C6 |
C19 |
N2 |
C8 |
359.8 |
360.0 |
N1 |
C8 |
N2 |
C9 |
181.3 |
180.0 |
N2 |
C8 |
N1 |
H5 |
182.8 |
180.0 |
N2 |
C8 |
C9 |
C18 |
160.8 |
360.0 |
N2 |
C8 |
C9 |
C10 |
342.5 |
179.7 |
C7 |
N1 |
C8 |
H5 |
180.0 |
180.0 |
N2 |
C8 |
N1 |
C9 |
178.7 |
180.0 |
N1 |
C8 |
C9 |
C18 |
339.5 |
180.0 |
N1 |
C8 |
C9 |
C10 |
161.2 |
359.8 |
N1 |
C8 |
C9 |
N2 |
178.7 |
180.0 |
C9 |
C8 |
N1 |
H5 |
4.1 |
0.0 |
C18 |
C9 |
C8 |
C10 |
178.3 |
180.2 |
C8 |
C9 |
C18 |
C16 |
174.3 |
180.1 |
C8 |
C9 |
C18 |
H10 |
354.3 |
0.0 |
C8 |
C9 |
C10 |
C11 |
184.3 |
179.7 |
C8 |
C9 |
C10 |
H21 |
4.3 |
359.9 |
C8 |
C9 |
C18 |
C10 |
181.8 |
179.8 |
C18 |
C9 |
C10 |
C11 |
6.0 |
359.5 |
C18 |
C9 |
C10 |
H21 |
186.0 |
179.7 |
C9 |
C18 |
C16 |
C17 |
181.4 |
180.0 |
C9 |
C18 |
C16 |
C13 |
6.3 |
359.9 |
C16 |
C18 |
C9 |
H10 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
C18 |
178.3 |
180.2 |
C10 |
C9 |
C18 |
C16 |
352.6 |
0.3 |
C10 |
C9 |
C18 |
H10 |
172.5 |
180.2 |
C16 |
C18 |
C9 |
C10 |
352.6 |
0.3 |
C9 |
C18 |
C16 |
H10 |
180.0 |
180.0 |
C17 |
C16 |
C18 |
C13 |
175.1 |
180.1 |
C18 |
C16 |
C17 |
H11 |
92.6 |
89.9 |
C18 |
C16 |
C17 |
H12 |
212.6 |
210.0 |
C18 |
C16 |
C17 |
H13 |
332.6 |
330.0 |
C9 |
C10 |
C11 |
H21 |
180.0 |
180.2 |
C10 |
C11 |
C12 |
H18 |
88.4 |
270.3 |
C10 |
C11 |
C12 |
H19 |
208.4 |
30.3 |
C10 |
C11 |
C12 |
H20 |
328.4 |
150.3 |
C18 |
C16 |
C17 |
C13 |
185.1 |
179.9 |
C17 |
C16 |
C18 |
H10 |
1.4 |
0.1 |
H11 |
C17 |
C16 |
H12 |
240.0 |
239.9 |
H11 |
C17 |
C16 |
H13 |
120.0 |
120.0 |
H12 |
C17 |
C16 |
H13 |
240.0 |
240.0 |
C18 |
C16 |
C13 |
C17 |
175.2 |
180.1 |
C13 |
C16 |
C18 |
H10 |
186.3 |
180.0 |
C13 |
C16 |
C17 |
H11 |
267.5 |
270.0 |
C13 |
C16 |
C17 |
H12 |
27.5 |
30.1 |
C13 |
C16 |
C17 |
H13 |
147.5 |
150.1 |
C16 |
C13 |
O3 |
C14 |
94.7 |
90.0 |
C9 |
C10 |
C11 |
C13 |
356.4 |
0.5 |
C9 |
C10 |
C11 |
C12 |
179.4 |
180.2 |
H18 |
C12 |
C11 |
H19 |
240.0 |
240.0 |
H18 |
C12 |
C11 |
H20 |
120.0 |
120.0 |
H19 |
C12 |
C11 |
H20 |
240.0 |
240.0 |
C13 |
O3 |
C14 |
C15 |
174.4 |
180.0 |
C13 |
O3 |
C14 |
H14 |
294.5 |
300.0 |
C13 |
O3 |
C14 |
H15 |
54.2 |
60.0 |
O4 |
C15 |
C14 |
O3 |
64.5 |
65.0 |
C15 |
C14 |
O3 |
H14 |
239.8 |
240.0 |
C15 |
C14 |
O3 |
H15 |
120.2 |
120.0 |
O3 |
C14 |
C15 |
H16 |
184.0 |
305.0 |
O3 |
C14 |
C15 |
H17 |
305.1 |
185.0 |
H14 |
C14 |
O3 |
H15 |
240.3 |
240.0 |
O3 |
C14 |
C15 |
H14 |
120.2 |
120.0 |
O3 |
C14 |
C15 |
H15 |
239.8 |
240.0 |
C14 |
C15 |
O4 |
H9 |
180.0 |
180.0 |
O4 |
C15 |
C14 |
H16 |
240.5 |
120.0 |
O4 |
C15 |
C14 |
H17 |
119.4 |
240.0 |
H14 |
C14 |
C15 |
H15 |
119.6 |
120.0 |
H16 |
C15 |
C14 |
H17 |
238.9 |
120.0 |
O3 |
C14 |
C15 |
O4 |
64.5 |
65.0 |
O4 |
C15 |
C14 |
H14 |
304.3 |
305.0 |
O4 |
C15 |
C14 |
H15 |
184.7 |
185.0 |
C14 |
C15 |
O4 |
H16 |
119.4 |
240.0 |
C14 |
C15 |
O4 |
H17 |
240.6 |
120.0 |
H16 |
C15 |
O4 |
H17 |
121.1 |
240.0 |
H1 |
C1 |
O1 |
C2 |
180.0 |
300.0 |
O1 |
C1 |
H1 |
H2 |
120.0 |
120.0 |
O1 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
H2 |
C1 |
H1 |
H3 |
120.0 |
120.0 |
H2 |
C1 |
O1 |
C2 |
300.0 |
60.0 |
O1 |
C1 |
H2 |
H1 |
240.0 |
240.0 |
O1 |
C1 |
H2 |
H3 |
120.0 |
120.1 |
H1 |
C1 |
H2 |
H3 |
240.1 |
240.0 |
H3 |
C1 |
O1 |
C2 |
60.0 |
180.1 |
O1 |
C1 |
H3 |
H1 |
120.0 |
120.0 |
O1 |
C1 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
H4 |
C3 |
C4 |
C6 |
179.2 |
180.0 |
H4 |
C3 |
C2 |
C20 |
178.9 |
180.3 |
C7 |
N1 |
H5 |
C8 |
180.0 |
180.0 |
H5 |
N1 |
C8 |
N2 |
182.8 |
180.0 |
H5 |
N1 |
C8 |
C9 |
4.1 |
0.0 |
O2 |
C5 |
H6 |
H7 |
120.0 |
119.9 |
O2 |
C5 |
H6 |
H8 |
240.0 |
239.9 |
H7 |
C5 |
H6 |
H8 |
120.0 |
120.0 |
O2 |
C5 |
H7 |
H6 |
240.0 |
240.0 |
O2 |
C5 |
H7 |
H8 |
120.0 |
120.0 |
H6 |
C5 |
H7 |
H8 |
240.0 |
239.9 |
O2 |
C5 |
H8 |
H6 |
120.0 |
120.1 |
O2 |
C5 |
H8 |
H7 |
240.0 |
240.1 |
H6 |
C5 |
H8 |
H7 |
120.0 |
120.0 |
H9 |
O4 |
C15 |
C14 |
180.0 |
180.0 |
H9 |
O4 |
C15 |
H16 |
60.6 |
300.0 |
H9 |
O4 |
C15 |
H17 |
299.5 |
60.0 |
H10 |
C18 |
C9 |
C10 |
172.5 |
180.2 |
C9 |
C18 |
H10 |
C16 |
180.0 |
180.0 |
H10 |
C18 |
C16 |
C17 |
1.4 |
0.1 |
H10 |
C18 |
C16 |
C13 |
186.3 |
180.0 |
H11 |
C17 |
C16 |
C13 |
267.5 |
270.0 |
C16 |
C17 |
H11 |
H12 |
120.0 |
120.0 |
C16 |
C17 |
H11 |
H13 |
240.0 |
240.0 |
H12 |
C17 |
H11 |
H13 |
120.0 |
120.0 |
H12 |
C17 |
C16 |
C13 |
27.5 |
30.1 |
C16 |
C17 |
H12 |
H11 |
240.0 |
240.0 |
C16 |
C17 |
H12 |
H13 |
120.0 |
120.0 |
H11 |
C17 |
H12 |
H13 |
240.0 |
240.0 |
H13 |
C17 |
C16 |
C13 |
147.5 |
150.1 |
C16 |
C17 |
H13 |
H11 |
120.0 |
120.0 |
C16 |
C17 |
H13 |
H12 |
240.0 |
240.0 |
H11 |
C17 |
H13 |
H12 |
120.0 |
120.0 |
O3 |
C14 |
H14 |
C15 |
239.0 |
240.0 |
O3 |
C14 |
H14 |
H15 |
119.5 |
120.0 |
C15 |
C14 |
H14 |
H15 |
240.5 |
240.0 |
H14 |
C14 |
C15 |
H16 |
63.8 |
185.0 |
H14 |
C14 |
C15 |
H17 |
184.9 |
64.9 |
O3 |
C14 |
H15 |
C15 |
121.0 |
120.0 |
O3 |
C14 |
H15 |
H14 |
240.5 |
240.0 |
C15 |
C14 |
H15 |
H14 |
119.5 |
120.0 |
H15 |
C14 |
C15 |
H16 |
304.2 |
65.0 |
H15 |
C14 |
C15 |
H17 |
65.3 |
305.0 |
O4 |
C15 |
H16 |
C14 |
116.8 |
240.0 |
H16 |
C15 |
C14 |
H14 |
63.8 |
185.0 |
H16 |
C15 |
C14 |
H15 |
304.2 |
65.0 |
C14 |
C15 |
H16 |
H17 |
121.6 |
240.0 |
H16 |
C15 |
O4 |
H9 |
60.6 |
300.0 |
O4 |
C15 |
H16 |
H17 |
238.4 |
120.0 |
O4 |
C15 |
H17 |
C14 |
243.2 |
119.9 |
H17 |
C15 |
C14 |
H14 |
184.9 |
64.9 |
H17 |
C15 |
C14 |
H15 |
65.3 |
305.0 |
C14 |
C15 |
H17 |
H16 |
238.4 |
120.0 |
H17 |
C15 |
O4 |
H9 |
299.5 |
60.0 |
O4 |
C15 |
H17 |
H16 |
121.6 |
239.9 |
C11 |
C12 |
H18 |
H19 |
120.0 |
120.0 |
C11 |
C12 |
H18 |
H20 |
240.0 |
240.0 |
H19 |
C12 |
H18 |
H20 |
120.0 |
120.1 |
C11 |
C12 |
H19 |
H18 |
240.0 |
240.0 |
C11 |
C12 |
H19 |
H20 |
120.0 |
119.9 |
H18 |
C12 |
H19 |
H20 |
240.0 |
239.9 |
C11 |
C12 |
H20 |
H18 |
120.0 |
120.0 |
C11 |
C12 |
H20 |
H19 |
240.0 |
240.1 |
H18 |
C12 |
H20 |
H19 |
120.0 |
120.1 |
C9 |
C10 |
H21 |
C11 |
180.0 |
179.8 |
C2 |
C20 |
H22 |
C19 |
180.0 |
179.7 |