PDB Chemical Component 1JY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1JY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.253 |
1.209 |
| C |
OXT |
1.263 |
1.342 |
| C |
CA |
1.504 |
1.507 |
| OE1 |
CD |
1.252 |
1.208 |
| CG |
CB |
1.517 |
1.529 |
| CG |
CD |
1.512 |
1.507 |
| CB |
CA |
1.517 |
1.530 |
| CD |
OE2 |
1.257 |
1.342 |
| CA |
N |
1.465 |
1.465 |
| N |
CBH |
1.343 |
1.347 |
| CBH |
OAE |
1.224 |
1.213 |
| CBH |
CAX |
1.520 |
1.507 |
| CAX |
CAZ |
1.532 |
1.530 |
| CAZ |
CBT |
1.541 |
1.530 |
| OAK |
CBG |
1.240 |
1.208 |
| CBG |
CBT |
1.499 |
1.507 |
| CBG |
OAD |
1.252 |
1.343 |
| CBT |
NBD |
1.442 |
1.465 |
| NBD |
CBJ |
1.328 |
1.348 |
| OAG |
CBJ |
1.216 |
1.216 |
| CBJ |
CBP |
1.502 |
1.475 |
| CBP |
CAQ |
1.382 |
1.398 |
| CBP |
CAP |
1.384 |
1.398 |
| CAQ |
CAS |
1.375 |
1.375 |
| CAP |
CAR |
1.397 |
1.376 |
| CAS |
CBQ |
1.392 |
1.392 |
| CAR |
CBQ |
1.413 |
1.391 |
| CBQ |
NBU |
1.366 |
1.391 |
| NBU |
CAU |
1.442 |
1.464 |
| NBU |
CBO |
1.464 |
1.465 |
| CAM |
CBO |
1.537 |
1.543 |
| CAM |
CAV |
1.546 |
1.543 |
| CAU |
CAL |
1.468 |
1.472 |
| CBO |
CBN |
1.507 |
1.514 |
| CAV |
CBK |
1.496 |
1.514 |
| CAL |
CAA |
1.242 |
1.174 |
| CBN |
CBK |
1.464 |
1.389 |
| CBN |
CAO |
1.416 |
1.381 |
| CBK |
CAN |
1.393 |
1.382 |
| CAO |
CBR |
1.412 |
1.391 |
| CAN |
CBM |
1.417 |
1.386 |
| CBR |
CBM |
1.407 |
1.408 |
| CBR |
CBI |
1.410 |
1.473 |
| OAF |
CBI |
1.269 |
1.219 |
| CBM |
NBB |
1.345 |
1.380 |
| CBI |
NBA |
1.351 |
1.346 |
| OAH |
CAT |
1.473 |
1.429 |
| NBB |
CBL |
1.357 |
1.344 |
| NBA |
CBL |
1.344 |
1.304 |
| CBL |
CAT |
1.514 |
1.508 |
| CAT |
H1 |
1.100 |
1.090 |
| CAT |
H2 |
1.100 |
1.090 |
| OAH |
H3 |
0.950 |
0.967 |
| NBB |
H4 |
1.000 |
0.970 |
| CAO |
H5 |
1.080 |
1.080 |
| CAN |
H6 |
1.080 |
1.080 |
| CAV |
H7 |
1.100 |
1.090 |
| CAV |
H8 |
1.100 |
1.090 |
| CAM |
H9 |
1.100 |
1.090 |
| CAM |
H10 |
1.100 |
1.089 |
| CBO |
H11 |
1.100 |
1.091 |
| CAU |
H12 |
1.100 |
1.090 |
| CAU |
H13 |
1.100 |
1.090 |
| CAA |
H14 |
1.060 |
1.050 |
| CAS |
H15 |
1.080 |
1.079 |
| CAQ |
H16 |
1.080 |
1.080 |
| CAR |
H17 |
1.080 |
1.081 |
| CAP |
H18 |
1.080 |
1.080 |
| NBD |
H19 |
1.000 |
0.971 |
| CBT |
H20 |
1.100 |
1.090 |
| OAD |
H21 |
0.950 |
0.967 |
| CAZ |
H22 |
1.100 |
1.090 |
| CAZ |
H23 |
1.100 |
1.090 |
| CAX |
H24 |
1.100 |
1.090 |
| CAX |
H25 |
1.100 |
1.090 |
| N |
H26 |
1.000 |
0.969 |
| CA |
H27 |
1.100 |
1.090 |
| OXT |
H28 |
0.950 |
0.967 |
| CB |
H29 |
1.100 |
1.090 |
| CB |
H30 |
1.100 |
1.090 |
| CG |
H31 |
1.100 |
1.090 |
| CG |
H32 |
1.100 |
1.090 |
| OE2 |
H33 |
0.950 |
0.967 |
Bond Angles for 1JY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
122.5 |
120.0 |
| C |
OXT |
H28 |
109.5 |
117.0 |
| C |
CA |
H27 |
111.1 |
109.5 |
| OE1 |
CD |
OE2 |
123.0 |
120.0 |
| CG |
CB |
H29 |
109.0 |
109.5 |
| CG |
CB |
H30 |
109.0 |
109.4 |
| CG |
CD |
OE2 |
119.3 |
120.0 |
| CD |
CG |
H31 |
109.9 |
109.4 |
| CD |
CG |
H32 |
109.8 |
109.5 |
| CB |
CA |
H27 |
110.9 |
109.5 |
| CD |
OE2 |
H33 |
109.5 |
117.0 |
| CA |
N |
H26 |
118.0 |
120.0 |
| CBH |
CAX |
H24 |
108.6 |
109.5 |
| CBH |
CAX |
H25 |
108.7 |
109.5 |
| CAX |
CAZ |
H22 |
109.4 |
109.4 |
| CAX |
CAZ |
H23 |
109.3 |
109.5 |
| CAZ |
CBT |
H20 |
110.4 |
109.5 |
| CBG |
CBT |
H20 |
111.0 |
109.5 |
| CBG |
OAD |
H21 |
109.5 |
117.0 |
| CBT |
NBD |
H19 |
119.7 |
120.0 |
| CBP |
CAQ |
H16 |
120.7 |
120.0 |
| CBP |
CAP |
H18 |
120.1 |
120.0 |
| CAQ |
CAS |
H15 |
119.4 |
120.0 |
| CAP |
CAR |
H17 |
120.8 |
120.0 |
| NBU |
CAU |
CAL |
109.0 |
109.5 |
| NBU |
CAU |
H12 |
109.6 |
109.5 |
| NBU |
CAU |
H13 |
109.6 |
109.5 |
| NBU |
CBO |
H11 |
111.0 |
110.3 |
| CBO |
CAM |
H9 |
110.7 |
110.8 |
| CBO |
CAM |
H10 |
110.7 |
110.8 |
| CAM |
CBO |
H11 |
110.0 |
110.3 |
| CAM |
CAV |
H7 |
111.5 |
110.3 |
| CAM |
CAV |
H8 |
111.5 |
110.3 |
| CAU |
CAL |
CAA |
174.0 |
180.0 |
| CAL |
CAU |
H12 |
109.6 |
109.4 |
| CAL |
CAU |
H13 |
109.6 |
109.5 |
| CAL |
CAA |
H14 |
180.0 |
180.0 |
| CBN |
CAO |
H5 |
120.3 |
120.1 |
| CBK |
CAN |
H6 |
121.7 |
120.0 |
| OAF |
CBI |
NBA |
116.3 |
120.9 |
| CBM |
NBB |
H4 |
119.0 |
119.7 |
| CBI |
NBA |
CBL |
120.4 |
121.7 |
| OAH |
CAT |
H1 |
111.0 |
109.5 |
| OAH |
CAT |
H2 |
111.0 |
109.5 |
| NBA |
CBL |
CAT |
117.6 |
118.3 |
| CBL |
CAT |
H1 |
111.0 |
109.4 |
| CBL |
CAT |
H2 |
111.0 |
109.4 |
| H1 |
CAT |
H2 |
109.4 |
109.5 |
| H7 |
CAV |
H8 |
109.5 |
110.3 |
| H9 |
CAM |
H10 |
109.4 |
110.8 |
| H12 |
CAU |
H13 |
109.5 |
109.4 |
| H22 |
CAZ |
H23 |
109.5 |
109.5 |
| H24 |
CAX |
H25 |
109.5 |
109.5 |
| H29 |
CB |
H30 |
109.5 |
109.5 |
| H31 |
CG |
H32 |
109.5 |
109.4 |
Torsion Angles for 1JY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
H28 |
360.0 |
0.0 |
| O |
C |
CA |
H27 |
312.2 |
120.0 |
| OXT |
C |
CA |
H27 |
131.4 |
300.0 |
| CB |
CA |
C |
H27 |
121.6 |
120.0 |
| C |
CA |
N |
H26 |
359.1 |
265.0 |
| CG |
CD |
OE1 |
OE2 |
180.0 |
180.0 |
| OE1 |
CD |
CG |
H31 |
283.3 |
240.0 |
| OE1 |
CD |
CG |
H32 |
162.8 |
120.0 |
| OE1 |
CD |
OE2 |
H33 |
0.0 |
360.0 |
| CG |
CB |
CA |
H27 |
173.7 |
305.0 |
| H29 |
CB |
CG |
H30 |
240.5 |
120.0 |
| OE1 |
CD |
CG |
OE2 |
180.0 |
180.0 |
| CD |
CG |
CB |
H29 |
269.3 |
60.0 |
| CD |
CG |
CB |
H30 |
28.8 |
300.0 |
| CG |
CD |
OE2 |
H33 |
180.0 |
180.0 |
| H31 |
CG |
CD |
H32 |
120.5 |
120.0 |
| C |
CA |
CB |
H27 |
238.3 |
240.0 |
| CB |
CA |
N |
H26 |
115.0 |
25.0 |
| OE2 |
CD |
CG |
H31 |
103.3 |
60.0 |
| OE2 |
CD |
CG |
H32 |
342.8 |
300.0 |
| N |
CBH |
CAX |
H24 |
29.1 |
60.0 |
| N |
CBH |
CAX |
H25 |
148.1 |
300.0 |
| OAE |
CBH |
CAX |
H24 |
209.1 |
240.0 |
| OAE |
CBH |
CAX |
H25 |
328.1 |
120.0 |
| CBH |
CAX |
CAZ |
H22 |
304.5 |
60.0 |
| CBH |
CAX |
CAZ |
H23 |
64.3 |
300.0 |
| H24 |
CAX |
CBH |
H25 |
241.0 |
120.0 |
| CAX |
CAZ |
CBT |
H20 |
173.4 |
55.0 |
| H22 |
CAZ |
CAX |
H23 |
240.2 |
120.0 |
| CBG |
CBT |
CAZ |
H20 |
123.9 |
120.0 |
| CAZ |
CBT |
NBD |
H19 |
258.2 |
335.1 |
| OAK |
CBG |
CBT |
H20 |
58.2 |
240.1 |
| OAK |
CBG |
OAD |
H21 |
360.0 |
359.9 |
| CAZ |
CBT |
CBG |
H20 |
236.4 |
240.0 |
| CBG |
CBT |
NBD |
H19 |
16.8 |
95.1 |
| OAD |
CBG |
CBT |
H20 |
237.8 |
60.0 |
| CBJ |
CBP |
CAQ |
H16 |
359.9 |
0.0 |
| CBJ |
CBP |
CAP |
H18 |
0.3 |
360.0 |
| CBP |
CAQ |
CAS |
H15 |
180.5 |
180.0 |
| CAP |
CBP |
CAQ |
H16 |
180.8 |
179.7 |
| CBP |
CAP |
CAR |
H17 |
179.2 |
180.0 |
| CBQ |
NBU |
CAU |
H12 |
37.6 |
30.0 |
| CBQ |
NBU |
CAU |
H13 |
157.8 |
150.0 |
| CBQ |
NBU |
CBO |
H11 |
159.2 |
354.3 |
| CAU |
NBU |
CBO |
H11 |
353.1 |
174.3 |
| NBU |
CAU |
CAL |
CAA |
136.5 |
295.3 |
| CAL |
CAU |
NBU |
H12 |
240.1 |
240.0 |
| CAL |
CAU |
NBU |
H13 |
119.9 |
120.0 |
| H12 |
CAU |
NBU |
H13 |
239.8 |
240.0 |
| NBU |
CBO |
CAM |
H9 |
271.4 |
334.2 |
| NBU |
CBO |
CAM |
H10 |
32.9 |
210.7 |
| CAM |
CBO |
NBU |
H11 |
129.0 |
122.2 |
| NBU |
CBO |
CAM |
H11 |
230.5 |
237.8 |
| CBO |
CAM |
CAV |
H7 |
79.3 |
267.6 |
| CBO |
CAM |
CAV |
H8 |
202.1 |
145.5 |
| H9 |
CAM |
CBO |
H10 |
238.4 |
123.5 |
| H7 |
CAV |
CAM |
H8 |
237.3 |
122.1 |
| NBU |
CAU |
CAL |
H12 |
119.9 |
120.0 |
| NBU |
CAU |
CAL |
H13 |
240.1 |
240.0 |
| CAU |
CAL |
CAA |
H14 |
40.7 |
169.0 |
| H12 |
CAU |
CAL |
H13 |
120.2 |
119.9 |
| CBO |
CBN |
CAO |
H5 |
3.6 |
0.0 |
| CAV |
CBK |
CAN |
H6 |
357.9 |
0.0 |
| CAA |
CAL |
CAU |
H12 |
16.6 |
175.3 |
| CAA |
CAL |
CAU |
H13 |
256.5 |
55.3 |
| CBK |
CBN |
CAO |
H5 |
181.0 |
180.3 |
| CBN |
CBK |
CAN |
H6 |
180.3 |
180.0 |
| CAN |
CBM |
NBB |
H4 |
358.4 |
0.1 |
| CBR |
CBM |
NBB |
H4 |
178.0 |
179.9 |
| OAF |
CBI |
NBA |
CBL |
179.9 |
179.9 |
| CBI |
NBA |
CBL |
CAT |
181.2 |
180.0 |
| CBL |
CAT |
OAH |
H1 |
241.0 |
120.0 |
| CBL |
CAT |
OAH |
H2 |
119.0 |
240.0 |
| H1 |
CAT |
OAH |
H2 |
238.1 |
120.1 |
| NBB |
CBL |
CAT |
H1 |
17.9 |
300.0 |
| NBB |
CBL |
CAT |
H2 |
255.9 |
60.0 |
| NBA |
CBL |
CAT |
H1 |
196.5 |
120.1 |
| NBA |
CBL |
CAT |
H2 |
74.5 |
240.0 |
| OAH |
CAT |
CBL |
H1 |
119.0 |
240.0 |
| OAH |
CAT |
CBL |
H2 |
241.0 |
120.0 |
| H1 |
CAT |
CBL |
H2 |
122.0 |
240.1 |
| OAH |
CAT |
H1 |
H2 |
122.8 |
239.9 |
| CBL |
CAT |
H1 |
H2 |
237.1 |
119.9 |
| OAH |
CAT |
H2 |
H1 |
237.1 |
120.1 |
| CBL |
CAT |
H2 |
H1 |
122.9 |
240.1 |
| H3 |
OAH |
CAT |
H1 |
299.0 |
60.0 |
| H3 |
OAH |
CAT |
H2 |
61.0 |
299.9 |
| CAM |
CAV |
H7 |
H8 |
123.9 |
237.9 |
| CAM |
CAV |
H8 |
H7 |
236.1 |
122.1 |
| CBO |
CAM |
H9 |
H10 |
122.4 |
236.5 |
| H9 |
CAM |
CBO |
H11 |
40.9 |
96.3 |
| H9 |
CAM |
CAV |
H7 |
320.2 |
25.8 |
| H9 |
CAM |
CAV |
H8 |
82.9 |
263.7 |
| CBO |
CAM |
H10 |
H9 |
237.6 |
123.5 |
| H10 |
CAM |
CBO |
H11 |
162.5 |
332.8 |
| H10 |
CAM |
CAV |
H7 |
198.5 |
149.3 |
| H10 |
CAM |
CAV |
H8 |
321.3 |
27.2 |
| H11 |
CBO |
CAM |
H9 |
40.9 |
96.3 |
| H11 |
CBO |
CAM |
H10 |
162.5 |
332.8 |
| NBU |
CAU |
H12 |
CAL |
240.5 |
240.0 |
| NBU |
CAU |
H12 |
H13 |
120.2 |
120.0 |
| H12 |
CAU |
CAL |
CAA |
16.6 |
175.3 |
| CAL |
CAU |
H12 |
H13 |
239.7 |
240.0 |
| NBU |
CAU |
H13 |
CAL |
119.5 |
120.0 |
| NBU |
CAU |
H13 |
H12 |
239.8 |
240.0 |
| H13 |
CAU |
CAL |
CAA |
256.5 |
55.3 |
| CAL |
CAU |
H13 |
H12 |
120.2 |
119.9 |
| H16 |
CAQ |
CAS |
H15 |
0.5 |
360.0 |
| H18 |
CAP |
CAR |
H17 |
359.2 |
0.1 |
| H20 |
CBT |
NBD |
H19 |
138.7 |
215.1 |
| CAX |
CAZ |
H22 |
H23 |
119.8 |
240.0 |
| H22 |
CAZ |
CBT |
H20 |
53.3 |
175.0 |
| CAX |
CAZ |
H23 |
H22 |
240.2 |
120.0 |
| H23 |
CAZ |
CBT |
H20 |
293.5 |
295.0 |
| CBH |
CAX |
H24 |
H25 |
118.5 |
240.0 |
| H24 |
CAX |
CAZ |
H22 |
184.0 |
180.0 |
| H24 |
CAX |
CAZ |
H23 |
303.8 |
60.0 |
| CBH |
CAX |
H25 |
H24 |
241.5 |
120.0 |
| H25 |
CAX |
CAZ |
H22 |
65.0 |
300.0 |
| H25 |
CAX |
CAZ |
H23 |
184.8 |
180.0 |
| H27 |
CA |
N |
H26 |
236.9 |
145.0 |
| CG |
CB |
H29 |
H30 |
119.2 |
240.0 |
| H29 |
CB |
CA |
H27 |
53.5 |
65.0 |
| CG |
CB |
H30 |
H29 |
240.8 |
120.0 |
| H30 |
CB |
CA |
H27 |
293.9 |
185.0 |
| H31 |
CG |
CB |
H29 |
29.0 |
180.0 |
| H31 |
CG |
CB |
H30 |
148.6 |
60.0 |
| H31 |
CG |
CD |
OE2 |
103.3 |
60.0 |
| CD |
CG |
H31 |
H32 |
239.3 |
240.0 |
| H32 |
CG |
CB |
H29 |
149.6 |
300.0 |
| H32 |
CG |
CB |
H30 |
269.1 |
180.0 |
| H32 |
CG |
CD |
OE2 |
342.8 |
300.0 |
| CD |
CG |
H32 |
H31 |
120.8 |
120.0 |