PDB Chemical Component 1JD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1JD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.512	1.507
C3	C2	1.373	1.389
C3	C4	1.398	1.384
C2	C6	1.343	1.381
C4	C5	1.405	1.390
C6	N1	1.322	1.319
O1	C7	1.251	1.213
C5	N1	1.329	1.324
C5	N2	1.440	1.394
C11	C10	1.509	1.531
C7	N2	1.333	1.348
C7	C8	1.531	1.507
C9	C8	1.506	1.530
C9	O2	1.418	1.429
C10	O2	1.422	1.429
C10	C12	1.526	1.530
CL1	C19	1.732	1.736
C8	O3	1.429	1.429
C15	N3	1.315	1.303
C15	C14	1.416	1.456
O3	C13	1.342	1.354
N3	N4	1.374	1.400
C14	C13	1.392	1.404
C14	C16	1.393	1.410
C13	N6	1.325	1.327
N4	C16	1.358	1.365
N4	C18	1.410	1.397
C19	C20	1.362	1.385
C19	C18	1.370	1.392
C16	N5	1.338	1.332
N6	C17	1.336	1.321
C20	C21	1.376	1.389
C18	N7	1.342	1.323
C17	N5	1.318	1.316
N7	C22	1.355	1.319
C21	C22	1.388	1.381
C1	H1	1.100	1.090
C1	H2	1.100	1.090
C1	H3	1.100	1.089
C3	H4	1.080	1.079
C4	H5	1.080	1.080
C6	H6	1.080	1.080
N2	H7	1.000	0.971
C8	H8	1.100	1.090
C9	H9	1.100	1.090
C9	H10	1.100	1.090
C10	H11	1.099	1.090
C11	H12	1.100	1.090
C11	H13	1.100	1.090
C11	H14	1.100	1.090
C12	H15	1.100	1.090
C12	H16	1.100	1.090
C12	H17	1.100	1.091
C15	H18	1.080	1.080
C17	H19	1.079	1.080
C20	H20	1.080	1.080
C21	H21	1.081	1.079
C22	H22	1.080	1.080

Bond Angles for 1JD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C6	119.2	120.4
C2	C1	H1	109.5	109.4
C2	C1	H2	109.5	109.5
C2	C1	H3	109.5	109.5
C3	C2	C6	118.5	119.3
C3	C4	C5	118.6	119.1
C4	C3	H4	120.6	120.8
C3	C4	H5	120.7	120.5
C2	C6	N1	124.4	120.9
C2	C6	H6	117.8	119.6
C4	C5	N1	120.4	120.6
C4	C5	N2	123.1	119.7
C5	C4	H5	120.7	120.4
O1	C7	C8	121.3	120.0
N1	C5	N2	116.5	119.7
C5	N2	H7	116.7	120.0
C11	C10	C12	109.7	109.5
C11	C10	H11	109.3	109.5
C7	N2	H7	116.6	120.0
C7	C8	O3	110.7	109.5
C7	C8	H8	107.8	109.5
C9	C8	O3	106.8	109.5
C9	C8	H8	108.1	109.4
O2	C9	H9	110.2	109.4
O2	C9	H10	110.2	109.5
C12	C10	H11	109.1	109.5
C10	C12	H15	109.5	109.5
C10	C12	H16	109.5	109.5
C10	C12	H17	109.5	109.5
C8	O3	C13	117.0	117.0
O3	C8	H8	109.1	109.5
C15	N3	N4	106.0	110.0
N3	C15	H18	124.5	126.1
C15	C14	C16	105.1	106.4
O3	C13	N6	119.8	120.9
N3	N4	C16	111.3	109.2
N3	N4	C18	119.2	125.4
C14	C13	N6	120.3	118.4
C14	C16	N4	106.4	106.7
C14	C16	N5	127.5	118.7
C13	N6	C17	118.0	121.2
C16	N4	C18	129.2	125.4
N4	C16	N5	126.0	134.7
N4	C18	N7	115.8	119.7
C19	C20	C21	117.5	118.5
C19	C20	H20	121.3	120.8
C19	C18	N7	124.1	120.6
N6	C17	H19	115.5	118.7
C20	C21	C22	120.0	119.3
C21	C20	H20	121.3	120.8
C20	C21	H21	120.0	120.3
C18	N7	C22	115.7	121.6
N7	C22	H22	118.7	119.5
C22	C21	H21	120.0	120.4
C21	C22	H22	118.7	119.5
H1	C1	H2	109.5	109.4
H1	C1	H3	109.5	109.5
H2	C1	H3	109.4	109.5
H9	C9	H10	109.5	109.4
H12	C11	H13	109.5	109.5
H12	C11	H14	109.5	109.5
H13	C11	H14	109.4	109.5
H15	C12	H16	109.5	109.5
H15	C12	H17	109.5	109.4
H16	C12	H17	109.5	109.5

Torsion Angles for 1JD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	C6	179.8	180.2
C1	C2	C6	N1	179.8	179.7
C1	C2	C6	H6	359.8	0.0
H1	C1	C2	H2	240.0	240.1
H1	C1	C2	H3	120.0	120.0
H2	C1	C2	H3	240.0	240.0
C1	C2	C3	C6	180.2	179.8
C3	C2	C1	H1	89.9	270.3
C3	C2	C1	H2	209.9	30.2
C3	C2	C1	H3	329.9	150.3
C3	C2	C6	N1	360.0	359.5
C3	C2	C6	H6	180.0	179.8
C4	C3	C2	C6	359.9	0.2
C3	C4	C5	N1	0.2	360.0
C3	C4	C5	N2	179.4	180.0
C5	C4	C3	H5	180.0	180.1
C6	C2	C1	H1	270.1	90.1
C6	C2	C1	H2	30.1	210.0
C6	C2	C1	H3	150.1	330.0
C5	C4	C3	H4	179.9	180.0
C3	C4	C5	H5	180.0	179.9
N1	C5	C4	N2	180.8	180.0
C4	C5	N2	H7	194.8	354.9
C2	C6	N1	H6	180.0	180.3
C6	N1	C5	N2	180.5	179.7
O1	C7	N2	H7	180.2	185.1
O1	C7	C8	O3	347.4	360.0
O1	C7	C8	H8	228.1	239.9
C2	C6	N1	C5	0.2	0.6
C4	C5	N1	N2	179.2	180.0
N1	C5	C4	H5	180.2	180.1
N1	C5	N2	H7	14.0	174.9
C4	C5	N2	N1	180.8	180.0
N2	C5	C4	H5	359.4	0.1
C7	N2	C5	H7	180.0	180.0
C12	C10	C11	H11	240.5	120.0
C11	C10	C12	H15	180.0	180.0
C11	C10	C12	H16	300.0	300.0
C11	C10	C12	H17	60.0	60.0
C5	N2	C7	H7	180.0	180.0
C8	C7	N2	H7	0.4	5.1
C9	C8	C7	O3	120.6	120.0
C9	C8	C7	H8	239.9	240.0
C7	C8	O3	C13	285.8	210.0
O3	C8	C7	H8	119.3	120.0
C7	C8	C9	O3	237.3	240.0
C7	C8	C9	H8	120.0	120.0
C9	C8	O3	C13	161.0	90.0
O3	C8	C9	H8	242.7	240.0
O2	C9	C8	O3	296.7	65.0
O2	C9	C8	H8	54.0	185.0
H9	C9	O2	H10	120.9	119.9
C10	O2	C9	H9	35.1	60.0
C10	O2	C9	H10	274.1	300.0
C11	C10	C12	H11	119.7	240.0
H15	C12	C10	H16	240.0	240.0
H15	C12	C10	H17	120.0	120.0
H16	C12	C10	H17	240.0	240.0
CL1	C19	C20	H20	359.9	0.0
C7	C8	O3	H8	241.4	240.0
C9	C8	O3	H8	116.7	120.0
C8	O3	C13	N6	348.8	0.0
N3	C15	C14	C16	359.7	360.0
C15	N3	N4	C16	2.4	360.0
C15	N3	N4	C18	176.7	179.9
C15	C14	C13	N6	179.9	180.2
C15	C14	C16	N4	1.7	0.0
C15	C14	C16	N5	179.6	180.1
C13	O3	C8	H8	44.3	330.0
C14	C13	O3	N6	180.0	180.2
O3	C13	N6	C17	179.8	179.7
N4	N3	C15	H18	178.8	180.0
C14	C16	N4	N3	357.4	360.0
C16	N4	N3	C18	185.6	180.1
N3	N4	C16	N5	179.5	179.9
N3	N4	C18	N7	100.5	180.1
O3	C13	C14	N6	180.0	179.8
C14	C13	N6	C17	359.8	359.4
N3	N4	C16	C14	357.4	360.0
C16	C14	C13	N6	0.4	0.2
C14	C16	N4	C18	183.8	180.1
N4	C16	C14	N5	182.1	179.9
C13	N6	C17	H19	180.3	180.3
N3	N4	C16	C18	173.7	179.9
C14	C16	N4	N5	177.9	180.1
C16	N4	C18	N7	273.7	360.0
N3	N4	C18	C16	186.8	180.1
C18	N4	C16	N5	5.9	360.0
C19	C18	N4	N7	178.1	180.2
N4	C18	N7	C22	179.3	179.8
C20	C19	C18	N7	358.9	0.2
C19	C20	C21	C22	0.2	0.1
C21	C20	C19	H20	180.0	180.0
C19	C20	C21	H21	180.2	179.9
N4	C18	C19	N7	182.0	179.7
C19	C18	N7	C22	1.2	359.5
C14	C16	N5	N4	182.5	179.9
N5	C16	N4	C18	5.9	360.0
C19	C20	C21	H20	180.0	180.0
C22	C21	C20	H21	180.0	180.1
C20	C21	C22	H22	180.0	180.0
C18	N7	C22	H22	179.3	180.2
C13	N6	C17	N5	0.3	0.6
N7	C22	C21	H21	180.0	179.8
C21	C22	N7	H22	180.0	180.3
C22	C21	C20	H20	180.1	180.1
C20	C21	C22	H21	180.0	179.9
C18	N7	C22	C21	359.3	0.5
N7	C22	C21	H22	180.0	179.7
H1	C1	C2	C6	270.1	90.1
C2	C1	H1	H2	120.0	119.9
C2	C1	H1	H3	240.0	240.0
H2	C1	H1	H3	119.9	120.0
H2	C1	C2	C6	30.1	210.0
C2	C1	H2	H1	240.0	240.1
C2	C1	H2	H3	120.0	120.0
H1	C1	H2	H3	240.0	240.0
H3	C1	C2	C6	150.1	330.0
C2	C1	H3	H1	120.0	120.0
C2	C1	H3	H2	240.0	240.0
H1	C1	H3	H2	120.0	120.0
H4	C3	C2	C6	180.0	180.3
H4	C3	C4	C5	179.9	180.0
H4	C3	C4	H5	360.0	359.9
C3	C4	H5	C5	180.0	180.1
H5	C4	C3	H4	360.0	359.9
H5	C4	C5	N1	180.2	180.1
H5	C4	C5	N2	359.4	0.1
C2	C6	H6	N1	180.0	179.7
C7	C8	H8	O3	120.3	120.0
C9	C8	H8	O3	244.2	240.0
H8	C8	O3	C13	44.3	330.0
H9	C9	C8	O3	56.2	185.0
H9	C9	C8	H8	173.5	305.0
O2	C9	H9	H10	238.7	240.1
H10	C9	C8	O3	177.1	305.0
H10	C9	C8	H8	294.4	65.0
O2	C9	H10	H9	121.4	119.9
C11	C10	H11	C12	240.1	120.0
H11	C10	C12	H15	60.3	300.0
H11	C10	C12	H16	180.3	60.0
H11	C10	C12	H17	300.3	180.0
H12	C11	C10	C12	299.1	300.0
H12	C11	C10	H11	58.6	180.0
H13	C11	H12	H14	120.0	120.1
H13	C11	C10	C12	59.1	60.0
H13	C11	C10	H11	178.6	300.0
H12	C11	H13	H14	240.0	239.9
H14	C11	C10	C12	179.1	180.0
H14	C11	C10	H11	298.6	60.0
H12	C11	H14	H13	120.0	120.1
H15	C12	C10	H11	60.3	300.0
C10	C12	H15	H16	120.0	120.0
C10	C12	H15	H17	240.0	240.0
H16	C12	H15	H17	120.0	120.0
H16	C12	C10	H11	180.3	60.0
C10	C12	H16	H15	240.0	240.0
C10	C12	H16	H17	120.0	120.0
H15	C12	H16	H17	240.0	240.1
H17	C12	C10	H11	300.3	180.0
C10	C12	H17	H15	120.0	120.0
C10	C12	H17	H16	240.0	240.0
H15	C12	H17	H16	120.0	120.0
H18	C15	N3	N4	178.8	180.0
H18	C15	C14	C16	179.7	180.0
C19	C20	H20	C21	180.0	180.0
H20	C20	C21	C22	180.1	180.1
H20	C20	C21	H21	0.1	359.9
C20	C21	H21	C22	180.0	180.1
H21	C21	C20	H20	0.1	359.9
H21	C21	C22	H22	0.0	0.2
H22	C22	C21	H21	0.0	0.2