PDB Chemical Component 1J9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1J9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C6	1.377	1.381
C1	C2	1.378	1.383
C6	C5	1.376	1.389
C2	C3	1.383	1.383
N4	C11	1.332	1.315
N4	C7	1.333	1.331
C11	N3	1.341	1.322
C5	N1	1.399	1.402
C5	C4	1.376	1.389
N3	C10	1.328	1.326
C7	N1	1.370	1.366
C7	C8	1.376	1.409
C3	C4	1.376	1.382
O3	C15	1.417	1.429
N1	N2	1.343	1.401
C4	CL2	1.725	1.736
C10	C8	1.370	1.406
C10	O1	1.381	1.354
C8	C9	1.418	1.413
C15	C14	1.508	1.530
N2	C9	1.336	1.303
O2	C14	1.414	1.429
O2	C13	1.419	1.429
C12	O1	1.414	1.429
C12	C13	1.523	1.530
C12	C16	1.499	1.506
N5	C16	1.359	1.349
N5	C17	1.418	1.394
C16	O4	1.228	1.212
N6	C17	1.327	1.323
N6	C21	1.332	1.319
C17	C18	1.387	1.390
C21	C20	1.369	1.381
C18	C19	1.399	1.385
C20	C19	1.378	1.389
C20	CL1	1.737	1.736
C1	H1	1.080	1.080
C2	H2	1.080	1.080
C3	H3	1.080	1.080
C6	H4	1.080	1.081
C9	H5	1.080	1.079
C11	H6	1.080	1.080
C12	H7	1.100	1.090
C13	H8	1.100	1.090
C13	H9	1.100	1.090
C14	H10	1.100	1.090
C14	H11	1.100	1.091
C15	H12	1.100	1.090
C15	H13	1.100	1.090
O3	H14	0.950	0.967
N5	H15	0.999	0.970
C18	H16	1.080	1.079
C19	H17	1.080	1.080
C21	H18	1.080	1.080

Bond Angles for 1J9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.1	120.1
C1	C6	C5	118.1	120.0
C6	C1	H1	120.0	119.9
C1	C6	H4	121.0	120.0
C1	C2	C3	121.3	120.1
C2	C1	H1	119.9	120.0
C1	C2	H2	119.4	120.0
C6	C5	N1	118.4	120.1
C2	C3	C4	118.9	120.1
C3	C2	H2	119.4	119.9
C2	C3	H3	120.6	120.0
N4	C11	H6	114.5	118.7
C5	N1	N2	119.0	125.8
C5	C4	CL2	120.0	120.0
N3	C10	O1	121.3	120.8
C7	N1	N2	113.3	108.3
C7	C8	C9	105.5	107.0
C3	C4	CL2	120.8	120.0
C4	C3	H3	120.6	120.0
O3	C15	H12	109.1	109.5
O3	C15	H13	109.0	109.5
N1	N2	C9	104.7	109.7
C8	C9	H5	124.5	125.8
C15	C14	H10	109.8	109.5
C15	C14	H11	109.8	109.5
N2	C9	H5	124.5	125.7
O2	C14	H10	109.8	109.4
O2	C14	H11	109.8	109.5
O2	C13	H8	110.1	109.5
O2	C13	H9	110.1	109.5
C13	C12	C16	110.6	109.5
C13	C12	H7	111.5	109.4
C12	C13	H8	110.1	109.5
C12	C13	H9	110.1	109.5
C12	C16	O4	123.2	120.0
C16	C12	H7	111.9	109.5
N5	C17	C18	123.2	119.7
C17	N5	H15	119.6	120.0
N6	C21	H18	117.0	119.5
C17	C18	C19	119.8	119.1
C17	C18	H16	120.1	120.5
C21	C20	CL1	116.3	120.4
C19	C18	H16	120.1	120.5
C18	C19	H17	121.1	120.7
C20	C19	H17	121.1	120.8
H8	C13	H9	109.5	109.5
H10	C14	H11	109.4	109.5
H12	C15	H13	109.5	109.5

Torsion Angles for 1J9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C3	0.7	359.9
C2	C1	C6	H1	180.0	179.8
C6	C1	C2	H2	180.7	180.0
C1	C6	C5	N1	181.1	180.0
C2	C1	C6	C5	359.1	0.0
C6	C1	C2	H1	180.0	180.2
C2	C1	C6	H4	179.1	180.0
C1	C2	C3	C4	359.7	0.1
C3	C2	C1	H2	180.0	179.9
C1	C2	C3	H3	179.7	180.0
C5	C6	C1	H1	179.1	180.3
C1	C6	C5	H4	180.0	179.9
C6	C5	N1	N2	107.8	179.9
C6	C5	C4	CL2	180.2	180.0
C3	C2	C1	C6	0.7	359.9
C3	C2	C1	H1	180.7	179.7
C1	C2	C3	H2	180.0	180.1
C2	C3	C4	CL2	179.6	179.9
C4	C3	C2	H3	180.0	180.1
C11	N3	C10	O1	180.3	180.0
N1	C5	C4	CL2	359.8	360.0
C7	N1	C5	N2	160.8	180.3
C5	N1	N2	C9	163.0	179.8
C1	C6	C5	C4	0.7	360.0
C3	C4	C5	CL2	179.5	180.0
C5	C4	C3	H3	180.1	180.0
C5	N1	C7	N2	198.3	179.8
C7	N1	N2	C9	360.0	359.6
C8	C7	N1	N2	0.1	0.2
C7	C8	C9	H5	180.0	179.9
C4	C3	C2	H2	179.7	180.0
C2	C3	C4	H3	180.0	179.9
C5	C4	C3	CL2	180.5	180.0
O3	C15	C14	H10	41.0	305.0
O3	C15	C14	H11	161.3	185.0
H12	C15	O3	H13	240.5	120.0
N1	N2	C9	H5	180.0	180.2
CL2	C4	C3	H3	359.6	0.1
C10	C8	C9	H5	359.6	360.0
N1	N2	C9	C8	360.0	0.4
N2	C9	C8	H5	180.0	179.8
O2	C14	C15	H10	240.2	120.0
O2	C14	C15	H11	119.8	240.0
H10	C14	C15	H11	239.6	120.0
C8	C9	N2	H5	180.0	180.2
C15	C14	O2	H10	119.8	240.0
C15	C14	O2	H11	240.2	120.0
C14	O2	C13	H8	286.8	60.0
C14	O2	C13	H9	47.7	300.0
H10	C14	O2	H11	120.4	240.0
O2	C13	C12	C16	185.5	305.0
O2	C13	C12	H7	60.3	185.0
C12	C13	O2	H8	240.5	120.0
C12	C13	O2	H9	119.6	240.0
H8	C13	O2	H9	239.1	120.0
O2	C13	C12	H8	119.6	240.0
O2	C13	C12	H9	240.4	120.0
C13	C12	C16	O4	110.2	120.0
C16	C12	C13	H7	125.2	120.0
H8	C13	C12	H9	120.9	240.0
C13	C12	C16	H7	235.0	240.0
C16	C12	C13	H8	65.9	65.0
C16	C12	C13	H9	305.0	185.0
N5	C16	C12	H7	57.5	60.1
N5	C17	C18	C19	178.5	180.0
N5	C17	C18	H16	358.5	359.9
O4	C16	C12	H7	235.2	240.0
N6	C17	N5	H15	3.2	184.8
N6	C17	C18	H16	179.1	180.2
N6	C21	C20	CL1	178.9	179.8
C18	C17	N5	H15	183.8	5.2
C19	C18	C17	H16	180.0	180.1
C17	C18	C19	H17	180.4	179.9
C21	C20	C19	H17	180.6	180.0
C17	C18	C19	H16	180.0	179.9
C20	C19	C18	H17	180.0	180.0
C20	C19	C18	H16	180.4	180.1
C18	C19	C20	H17	180.0	180.0
CL1	C20	C19	H17	0.5	0.0
C2	C1	H1	C6	180.0	180.2
H1	C1	C6	C5	179.1	180.3
H1	C1	C6	H4	359.1	0.2
H1	C1	C2	C3	180.7	179.7
H1	C1	C2	H2	0.8	359.7
H2	C2	C1	C6	180.7	180.0
C1	C2	H2	C3	180.0	179.9
H2	C2	C1	H1	0.8	359.7
H2	C2	C3	C4	179.7	180.0
H2	C2	C3	H3	359.6	359.9
C2	C3	H3	C4	180.0	180.1
H3	C3	C2	H2	359.6	359.9
H3	C3	C4	CL2	359.6	0.1
C1	C6	H4	C5	180.0	180.1
H4	C6	C1	H1	359.1	0.2
H4	C6	C5	N1	1.1	0.1
C13	C12	H7	C16	124.5	120.0
H7	C12	C13	H8	300.7	305.0
H7	C12	C13	H9	179.9	65.0
H7	C12	C16	O4	235.2	240.0
O2	C13	H8	H9	121.2	240.0
H8	C13	C12	C16	65.9	65.0
H8	C13	C12	H7	300.7	305.0
C12	C13	H8	H9	238.7	120.0
O2	C13	H9	H8	238.8	120.0
H9	C13	C12	C16	305.0	185.0
H9	C13	C12	H7	179.9	65.0
C12	C13	H9	H8	121.2	240.0
C15	C14	H10	H11	120.6	240.0
O2	C14	H10	H11	239.4	120.0
C15	C14	H11	H10	239.4	120.0
O2	C14	H11	H10	120.6	240.0
O3	C15	H12	H13	119.3	239.9
H12	C15	C14	H10	280.7	65.0
H12	C15	C14	H11	41.1	305.0
O3	C15	H13	H12	240.7	120.0
H13	C15	C14	H10	161.2	185.0
H13	C15	C14	H11	281.5	65.0
H14	O3	C15	H12	300.3	60.0
H14	O3	C15	H13	59.8	300.0
H15	N5	C17	C18	183.8	5.2
C17	C18	H16	C19	180.0	180.1
H16	C18	C19	H17	0.4	0.0
H17	C19	C18	H16	0.4	0.0
H18	C21	C20	CL1	358.9	360.0