PDB Chemical Component 1GD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1GD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O12 |
C11 |
1.195 |
1.213 |
| C18 |
C19 |
1.367 |
1.381 |
| C18 |
C17 |
1.398 |
1.383 |
| C19 |
C14 |
1.370 |
1.382 |
| C11 |
C13 |
1.551 |
1.507 |
| C11 |
N10 |
1.416 |
1.348 |
| C17 |
C16 |
1.400 |
1.382 |
| C14 |
C13 |
1.498 |
1.508 |
| C14 |
C15 |
1.409 |
1.382 |
| C9 |
N10 |
1.471 |
1.465 |
| C9 |
C8 |
1.512 |
1.508 |
| C16 |
C15 |
1.423 |
1.382 |
| C8 |
C7 |
1.378 |
1.382 |
| C8 |
C20 |
1.414 |
1.382 |
| C7 |
C6 |
1.384 |
1.383 |
| C20 |
C21 |
1.422 |
1.381 |
| C6 |
C5 |
1.377 |
1.382 |
| C21 |
C5 |
1.405 |
1.383 |
| C5 |
S02 |
1.726 |
1.762 |
| N1 |
S02 |
1.660 |
1.655 |
| O4 |
S02 |
1.434 |
1.422 |
| S02 |
O3 |
1.411 |
1.421 |
| C13 |
H1 |
1.100 |
1.090 |
| C13 |
H2 |
1.100 |
1.090 |
| C15 |
H3 |
1.080 |
1.080 |
| C17 |
H4 |
1.080 |
1.080 |
| C20 |
H5 |
1.080 |
1.080 |
| C21 |
H6 |
1.080 |
1.081 |
| N1 |
H7 |
0.999 |
0.970 |
| N1 |
H8 |
1.000 |
0.970 |
| C6 |
H9 |
1.080 |
1.080 |
| C7 |
H10 |
1.080 |
1.080 |
| C9 |
H11 |
1.100 |
1.090 |
| C9 |
H12 |
1.100 |
1.090 |
| N10 |
H13 |
1.000 |
0.971 |
| C16 |
H14 |
1.080 |
1.081 |
| C18 |
H15 |
1.080 |
1.080 |
| C19 |
H16 |
1.081 |
1.080 |
Bond Angles for 1GD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C19 |
C18 |
H15 |
119.6 |
120.0 |
| C18 |
C19 |
H16 |
118.8 |
120.0 |
| C18 |
C17 |
H4 |
121.4 |
120.1 |
| C11 |
C13 |
H1 |
108.6 |
109.5 |
| C11 |
C13 |
H2 |
108.6 |
109.5 |
| C11 |
N10 |
H13 |
123.6 |
120.0 |
| C16 |
C17 |
H4 |
121.4 |
120.0 |
| C17 |
C16 |
H14 |
118.7 |
120.0 |
| C14 |
C13 |
H1 |
108.6 |
109.5 |
| C14 |
C13 |
H2 |
108.6 |
109.5 |
| C14 |
C15 |
H3 |
121.6 |
120.0 |
| N10 |
C9 |
H11 |
107.2 |
109.4 |
| N10 |
C9 |
H12 |
107.2 |
109.5 |
| C9 |
N10 |
H13 |
123.6 |
120.0 |
| C16 |
C15 |
H3 |
121.6 |
120.0 |
| C8 |
C7 |
H10 |
119.3 |
120.1 |
| C8 |
C20 |
H5 |
120.4 |
120.0 |
| C7 |
C6 |
H9 |
117.3 |
120.0 |
| C20 |
C21 |
C5 |
124.0 |
120.0 |
| C21 |
C20 |
H5 |
120.4 |
120.0 |
| C20 |
C21 |
H6 |
118.0 |
120.0 |
| C21 |
C5 |
S02 |
123.1 |
120.0 |
| C5 |
C21 |
H6 |
118.0 |
119.9 |
| N1 |
S02 |
O3 |
110.2 |
106.4 |
| S02 |
N1 |
H7 |
109.5 |
120.0 |
| S02 |
N1 |
H8 |
109.5 |
120.1 |
| H1 |
C13 |
H2 |
109.5 |
109.5 |
| H7 |
N1 |
H8 |
109.4 |
120.0 |
| H11 |
C9 |
H12 |
109.5 |
109.5 |
Torsion Angles for 1GD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
C11 |
C13 |
H1 |
196.6 |
120.0 |
| O12 |
C11 |
C13 |
H2 |
315.5 |
240.0 |
| O12 |
C11 |
N10 |
H13 |
180.6 |
180.0 |
| C19 |
C18 |
C17 |
H4 |
179.9 |
180.3 |
| C16 |
C17 |
C18 |
H4 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H14 |
180.0 |
180.0 |
| C19 |
C14 |
C13 |
H1 |
203.6 |
150.0 |
| C19 |
C14 |
C13 |
H2 |
84.7 |
29.9 |
| C19 |
C14 |
C15 |
H3 |
179.0 |
180.0 |
| C14 |
C13 |
C11 |
H1 |
239.5 |
240.0 |
| C14 |
C13 |
C11 |
H2 |
120.5 |
120.0 |
| H1 |
C13 |
C11 |
H2 |
241.0 |
240.0 |
| N10 |
C11 |
C13 |
H1 |
18.7 |
300.0 |
| N10 |
C11 |
C13 |
H2 |
137.7 |
60.0 |
| C11 |
N10 |
C9 |
H11 |
280.2 |
60.0 |
| C11 |
N10 |
C9 |
H12 |
37.7 |
300.0 |
| C9 |
N10 |
C11 |
H13 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H4 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
H3 |
180.6 |
180.0 |
| C11 |
C13 |
C14 |
H1 |
120.5 |
120.0 |
| C11 |
C13 |
C14 |
H2 |
239.4 |
240.0 |
| H1 |
C13 |
C14 |
H2 |
118.9 |
120.1 |
| C15 |
C14 |
C13 |
H1 |
21.6 |
330.1 |
| C15 |
C14 |
C13 |
H2 |
262.7 |
210.0 |
| C16 |
C15 |
C14 |
H3 |
180.0 |
180.3 |
| C11 |
N10 |
C9 |
H13 |
180.0 |
180.0 |
| H11 |
C9 |
N10 |
H12 |
242.6 |
120.0 |
| C9 |
C8 |
C7 |
H10 |
357.5 |
359.7 |
| C9 |
C8 |
C20 |
H5 |
2.2 |
0.3 |
| C14 |
C15 |
C16 |
H3 |
180.0 |
179.7 |
| C7 |
C8 |
C20 |
H5 |
178.7 |
179.7 |
| C8 |
C7 |
C6 |
H9 |
178.7 |
179.7 |
| C21 |
C20 |
C8 |
H5 |
180.0 |
179.7 |
| C8 |
C20 |
C21 |
H6 |
181.5 |
180.3 |
| C8 |
C20 |
C21 |
H5 |
180.0 |
180.3 |
| C20 |
C21 |
C5 |
S02 |
180.5 |
180.0 |
| C5 |
C21 |
C20 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C21 |
H6 |
178.6 |
180.0 |
| C5 |
C21 |
C20 |
H5 |
181.5 |
180.0 |
| C20 |
C21 |
C5 |
H6 |
180.0 |
180.0 |
| S02 |
C5 |
C21 |
H6 |
0.5 |
360.0 |
| C5 |
S02 |
N1 |
H7 |
180.0 |
360.0 |
| C5 |
S02 |
N1 |
H8 |
300.0 |
179.9 |
| C21 |
C5 |
S02 |
N1 |
310.6 |
90.0 |
| H7 |
N1 |
S02 |
H8 |
240.0 |
180.1 |
| C21 |
C5 |
S02 |
O4 |
196.4 |
203.6 |
| O4 |
S02 |
N1 |
H7 |
294.1 |
246.5 |
| O4 |
S02 |
N1 |
H8 |
54.1 |
66.4 |
| C21 |
C5 |
S02 |
O3 |
68.5 |
336.5 |
| O3 |
S02 |
N1 |
H7 |
62.8 |
113.5 |
| O3 |
S02 |
N1 |
H8 |
182.8 |
293.5 |
| C11 |
C13 |
H1 |
H2 |
118.4 |
120.0 |
| C14 |
C13 |
H1 |
H2 |
241.7 |
240.0 |
| C11 |
C13 |
H2 |
H1 |
241.6 |
240.0 |
| C14 |
C13 |
H2 |
H1 |
118.3 |
120.0 |
| H4 |
C17 |
C16 |
H14 |
360.0 |
0.0 |
| H5 |
C20 |
C21 |
C5 |
181.5 |
180.0 |
| H5 |
C20 |
C21 |
H6 |
1.5 |
0.0 |
| C20 |
C21 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C21 |
C20 |
H5 |
1.5 |
0.0 |
| H6 |
C21 |
C5 |
S02 |
0.5 |
360.0 |
| H7 |
N1 |
S02 |
O3 |
62.8 |
113.5 |
| S02 |
N1 |
H7 |
H8 |
120.0 |
179.9 |
| H8 |
N1 |
S02 |
O3 |
182.8 |
293.5 |
| S02 |
N1 |
H8 |
H7 |
240.0 |
180.1 |
| H10 |
C7 |
C6 |
H9 |
358.8 |
0.0 |
| N10 |
C9 |
H11 |
H12 |
115.9 |
240.0 |
| H11 |
C9 |
N10 |
H13 |
100.2 |
240.0 |
| N10 |
C9 |
H12 |
H11 |
244.1 |
120.0 |
| H12 |
C9 |
N10 |
H13 |
217.7 |
120.0 |
| H13 |
N10 |
C9 |
H11 |
100.2 |
240.0 |
| H13 |
N10 |
C9 |
H12 |
217.7 |
120.0 |
| H14 |
C16 |
C17 |
H4 |
360.0 |
0.0 |
| H14 |
C16 |
C15 |
H3 |
0.6 |
0.0 |
| H15 |
C18 |
C19 |
H16 |
359.6 |
0.3 |
| H15 |
C18 |
C17 |
H4 |
359.9 |
360.0 |
| H16 |
C19 |
C18 |
H15 |
359.6 |
0.3 |