Atom Nomenclature for 1G6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1G6

Atom Name (V3) Atom Name (V2)
C12 C12
O13 O13
C8 C8
N9 N9
N10 N10
N11 N11
C7 C7
C3 C3
C2 C2
C1 C1
C4 C4
C5 C5
C6 C6
C25 C25
O26 O26
C15 C15
C16 C16
C17 C17
C22 C22
C21 C21
C20 C20
C23 C23
N24 N24
C19 C19
C18 C18
N14 N14
N27 N27
C28 C28
C33 C33
O34 O34
C29 C29
C30 C30
C31 C31
C32 C32
O50 O50
S48 S48
O49 O49
C51 C51
C47 C47
C46 C46
C36 C36
C37 C37
C38 C38
C43 C43
C42 C42
C41 C41
C44 C44
N45 N45
C40 C40
C39 C39
N35 N35
H45 H45
H47 H47
H48 H48
H49 H49
H53 H53
H50 H50
H51 H51
H52 H52
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H42 H42
H43 H43
H44 H44
H31 H31
H21 H21
H22 H22
H23 H23
H24 H24
H28 H28
H29 H29
H30 H30
H25 H25
H26 H26
H27 H27
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H18 H18
H19 H19
H20 H20