PDB Chemical Component 1FZ

Ideal Model

Chemical Description

Name 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine
Formula C10 H18 N3 O13 P3
Formal charge 0
Molecular weight 481.184 g/mol
Component type NON-POLYMER

Chemical features

Atom count 47
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-N-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O
InChI descriptor InChI=1S/C10H18N3O13P3/c1-5-3-13(10(16)11-9(5)15)8-2-6(14)7(25-8)4-24-27(17,18)12-28(19,20)26-29(21,22)23/h3,6-8,14H,2,4H2,1H3,(H,11,15,16)(H2,21,22,23)(H3,12,17,18,19,20)/t6-,7+,8+/m0/s1
InChIKey descriptor YRKUYVYMPXAOAT-XLPZGREQSA-N

Status Information

Last modified 2013-04-05
Created 2013-01-18
Release status REL
Model PDB code 4IR1
Processing site RCSB