PDB Chemical Component 1FZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1FZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3G |
PG |
1.489 |
1.480 |
| O1G |
PG |
1.516 |
1.609 |
| O2G |
PG |
1.515 |
1.610 |
| PG |
O3B |
1.615 |
1.610 |
| O1A |
PA |
1.532 |
1.480 |
| O3B |
PB |
1.603 |
1.610 |
| O2B |
PB |
1.504 |
1.480 |
| PB |
N3A |
1.636 |
1.682 |
| PB |
O1B |
1.502 |
1.610 |
| PA |
N3A |
1.608 |
1.684 |
| PA |
O2A |
1.529 |
1.609 |
| PA |
O5' |
1.639 |
1.610 |
| C5' |
O5' |
1.417 |
1.430 |
| C5' |
C4' |
1.517 |
1.530 |
| O3' |
C3' |
1.424 |
1.429 |
| C4' |
C3' |
1.515 |
1.550 |
| C4' |
O4' |
1.444 |
1.446 |
| C3' |
C2' |
1.518 |
1.549 |
| O4' |
C1' |
1.437 |
1.437 |
| C5M |
C5 |
1.515 |
1.507 |
| C2' |
C1' |
1.508 |
1.541 |
| C6 |
C5 |
1.390 |
1.350 |
| C6 |
N1 |
1.350 |
1.369 |
| C1' |
N1 |
1.485 |
1.465 |
| C5 |
C4 |
1.513 |
1.417 |
| N1 |
C2 |
1.423 |
1.345 |
| C4 |
O4 |
1.264 |
1.217 |
| C4 |
N3 |
1.349 |
1.348 |
| C2 |
N3 |
1.343 |
1.346 |
| C2 |
O2 |
1.243 |
1.217 |
| C6 |
H1 |
1.080 |
1.079 |
| C5M |
H2 |
1.100 |
1.089 |
| C5M |
H3 |
1.100 |
1.090 |
| C5M |
H4 |
1.100 |
1.090 |
| N3 |
H5 |
1.000 |
0.970 |
| C1' |
H6 |
1.100 |
1.091 |
| C2' |
H7 |
1.100 |
1.090 |
| C2' |
H8 |
1.100 |
1.090 |
| C3' |
H9 |
1.100 |
1.090 |
| O3' |
H10 |
0.950 |
0.968 |
| C4' |
H11 |
1.100 |
1.090 |
| C5' |
H12 |
1.101 |
1.089 |
| C5' |
H13 |
1.100 |
1.089 |
| O2A |
H14 |
0.950 |
0.968 |
| N3A |
H15 |
1.000 |
1.009 |
| O1B |
H16 |
0.950 |
0.967 |
| O1G |
H17 |
0.950 |
0.967 |
| O2G |
H18 |
0.950 |
0.967 |
Bond Angles for 1FZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1A |
PA |
N3A |
107.3 |
109.4 |
| O1A |
PA |
O2A |
112.4 |
109.4 |
| PB |
N3A |
H15 |
104.9 |
111.0 |
| PB |
O1B |
H16 |
109.5 |
114.0 |
| O2A |
PA |
N3A |
110.9 |
109.5 |
| PA |
N3A |
H15 |
104.9 |
110.9 |
| PA |
O2A |
H14 |
109.5 |
114.0 |
| O5' |
C5' |
H12 |
109.8 |
109.5 |
| O5' |
C5' |
H13 |
109.8 |
109.5 |
| C5' |
C4' |
H11 |
108.6 |
110.7 |
| O3' |
C3' |
H9 |
111.1 |
110.8 |
| C4' |
C3' |
H9 |
109.8 |
110.9 |
| C3' |
C2' |
H7 |
110.9 |
110.5 |
| C3' |
C2' |
H8 |
110.9 |
110.6 |
| O4' |
C1' |
H6 |
109.7 |
109.9 |
| C2' |
C1' |
H6 |
108.7 |
109.8 |
| C6 |
N1 |
C2 |
119.2 |
120.6 |
| N1 |
C6 |
H1 |
119.2 |
120.2 |
| C5 |
C4 |
N3 |
117.6 |
119.4 |
| C4 |
N3 |
H5 |
118.9 |
119.9 |
| C2 |
N3 |
H5 |
118.9 |
119.8 |
| H2 |
C5M |
H3 |
109.5 |
109.5 |
| H2 |
C5M |
H4 |
109.4 |
109.5 |
| H3 |
C5M |
H4 |
109.4 |
109.5 |
| H7 |
C2' |
H8 |
109.4 |
110.4 |
| H12 |
C5' |
H13 |
109.5 |
109.5 |
Torsion Angles for 1FZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2A |
PA |
O1A |
N3A |
237.8 |
240.0 |
| O1A |
PA |
N3A |
H15 |
279.1 |
176.1 |
| O1A |
PA |
O2A |
H14 |
0.0 |
180.0 |
| O3B |
PB |
N3A |
H15 |
352.5 |
303.9 |
| O3B |
PB |
O1B |
H16 |
121.5 |
300.0 |
| O2B |
PB |
N3A |
H15 |
115.6 |
63.9 |
| O2B |
PB |
O1B |
H16 |
0.0 |
180.0 |
| PA |
N3A |
PB |
H15 |
237.6 |
236.1 |
| O1B |
PB |
N3A |
H15 |
239.8 |
183.9 |
| O1A |
PA |
N3A |
O2A |
236.9 |
240.0 |
| PB |
N3A |
PA |
H15 |
122.4 |
123.9 |
| N3A |
PA |
O2A |
H14 |
239.9 |
60.1 |
| O1A |
PA |
O2A |
N3A |
120.1 |
119.9 |
| O2A |
PA |
N3A |
H15 |
42.2 |
296.0 |
| PA |
O5' |
C5' |
H12 |
341.9 |
60.0 |
| PA |
O5' |
C5' |
H13 |
102.3 |
300.0 |
| O5' |
C5' |
C4' |
H11 |
175.4 |
308.0 |
| H12 |
C5' |
O5' |
H13 |
239.6 |
120.0 |
| C5' |
C4' |
C3' |
H9 |
326.3 |
322.7 |
| C4' |
C3' |
O3' |
H9 |
236.2 |
236.4 |
| O3' |
C3' |
C2' |
H7 |
271.3 |
20.4 |
| O3' |
C3' |
C2' |
H8 |
33.1 |
257.8 |
| O3' |
C3' |
C4' |
H9 |
124.5 |
123.6 |
| C4' |
C3' |
C2' |
H7 |
150.9 |
262.2 |
| C4' |
C3' |
C2' |
H8 |
272.7 |
139.7 |
| O4' |
C4' |
C3' |
H9 |
87.7 |
81.3 |
| C4' |
O4' |
C1' |
H6 |
122.4 |
93.1 |
| C3' |
C2' |
C1' |
H6 |
218.6 |
242.4 |
| H7 |
C2' |
C3' |
H8 |
238.2 |
122.5 |
| C2' |
C1' |
O4' |
H6 |
242.4 |
240.5 |
| C5M |
C5 |
C4 |
N3 |
179.6 |
180.2 |
| O4' |
C1' |
C2' |
H6 |
118.2 |
119.5 |
| C6 |
C5 |
C4 |
N3 |
359.9 |
0.3 |
| C1' |
N1 |
C6 |
H1 |
359.4 |
0.0 |
| C5 |
C4 |
N3 |
H5 |
181.4 |
179.8 |
| C2 |
N1 |
C6 |
H1 |
181.2 |
179.7 |
| N1 |
C2 |
N3 |
H5 |
178.6 |
180.0 |
| C2 |
N3 |
C4 |
H5 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.0 |
0.3 |
| C4 |
N3 |
C2 |
H5 |
180.0 |
180.0 |
| H1 |
C6 |
N1 |
C2 |
181.2 |
179.7 |
| H3 |
C5M |
H2 |
H4 |
120.0 |
120.0 |
| H2 |
C5M |
H3 |
H4 |
240.0 |
239.9 |
| H2 |
C5M |
H4 |
H3 |
120.0 |
120.0 |
| C3' |
C2' |
H7 |
H8 |
122.6 |
237.4 |
| H7 |
C2' |
C1' |
H6 |
99.5 |
1.1 |
| C3' |
C2' |
H8 |
H7 |
237.4 |
122.6 |
| H8 |
C2' |
C1' |
H6 |
337.8 |
123.6 |
| H9 |
C3' |
C2' |
H7 |
33.9 |
144.0 |
| H9 |
C3' |
C2' |
H8 |
155.6 |
21.5 |
| H10 |
O3' |
C3' |
H9 |
303.8 |
297.8 |
| H11 |
C4' |
C3' |
H9 |
205.0 |
199.7 |
| O5' |
C5' |
H12 |
H13 |
120.6 |
240.0 |
| H12 |
C5' |
C4' |
H11 |
55.7 |
68.0 |
| O5' |
C5' |
H13 |
H12 |
239.4 |
120.0 |
| H13 |
C5' |
C4' |
H11 |
295.3 |
188.0 |
| H14 |
O2A |
PA |
N3A |
239.9 |
60.1 |