Atom Nomenclature for 1FM

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1FM

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
C11 C11
C14 C14
C15 C15
O15 O15
C16 C16
C17 C17
C18 C18
C23 C23
C24 C24
C26 C26
C31 C31
C34 C34
O38 O38
C39 C39
C40 C40
O40 O40
C41 C41
C42 C42
O42 O42
O44 O44
O46 O46
O48 O48
C59 C59
C62 C62
H14 H14
H16 H16
H17 H17
H18 H18
H18A H18A
H23 H23
H24 H24
H31 H31
H34 H34
H34A H34A
H39 H39
H41 H41
H42 H42
HO42 HO42
HO44 HO44
HO46 HO46
H59 H59
H59A H59A
H59B H59B
H62 H62
H62A H62A
H62B H62B