PDB Chemical Component 1FC

Ideal Model

Chemical Description

Name 4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid
Formula C10 H13 F N3 O9 P
Formal charge 0
Molecular weight 369.197 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C2' C3' C4' C1'
Observed leaving atoms OP3 H8
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid
Systematic name (OpenEye OEToolkits) 4-azanyl-1-[(2R,3S,4R,5R)-3-fluoranyl-4-oxidanyl-5-(phosphonooxymethyl)oxolan-2-yl]-2-oxidanylidene-pyrimidine-5-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1C(O)=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F
SMILES (CACTVS) NC1=NC(=O)N(C=C1C(O)=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F
Stereo SMILES (OpenEye) C1=C(C(=NC(=O)N1[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F)N)C(=O)O
InChI descriptor InChI=1S/C10H13FN3O9P/c11-5-6(15)4(2-22-24(19,20)21)23-8(5)14-1-3(9(16)17)7(12)13-10(14)18/h1,4-6,8,15H,2H2,(H,16,17)(H2,12,13,18)(H2,19,20,21)/t4-,5+,6-,8-/m1/s1
InChIKey descriptor RSWNDZRKHUVSHC-BYPJNBLXSA-N

Status Information

Last modified 2012-02-10
Created 2011-11-17
Release status REL
Model PDB code 3UOB
Processing site RCSB