Atom Nomenclature for 1FC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1FC

Atom Name (V3) Atom Name (V2)
F24 F24
C2' C2'
C3' C3'
O3' O3'
C4' C4'
C5' C5'
O5' O5'
P P
OP2 OP2
OP1 OP1
C1' C1'
O4' O4'
N1 N1
C6 C6
C5 C5
C21 C21
O23 O23
O22 O22
C4 C4
N4 N4
N3 N3
C2 C2
O2 O2
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
OP3 OP3
H8 H8