PDB Chemical Component 1E9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1E9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O3 S3 1.477 1.421
C23 C24 1.410 1.383
C23 C22 1.418 1.380
C24 C19 1.414 1.383
C34 C35 1.547 1.531
C34 N4 1.469 1.469
S3 N5 1.658 1.672
S3 C41 1.755 1.771
S3 O4 1.470 1.421
O2 S2 1.478 1.421
C37 C41 1.402 1.362
C37 C36 1.420 1.395
N5 C42 1.294 1.295
C41 C40 1.387 1.404
N3 C35 1.472 1.469
N3 C31 1.470 1.469
N3 C32 1.470 1.470
C31 C22 1.528 1.507
C36 N4 1.355 1.393
C36 C39 1.426 1.391
N4 C33 1.479 1.470
C42 C40 1.472 1.469
C42 N6 1.388 1.379
C40 C38 1.402 1.405
C22 C21 1.429 1.394
C19 C20 1.414 1.380
C33 C32 1.553 1.531
N6 S2 1.698 1.655
C39 C38 1.414 1.373
S2 O1 1.471 1.420
S2 C14 1.779 1.762
C21 C20 1.417 1.393
C21 C25 1.479 1.484
C13 C14 1.402 1.383
C13 C18 1.400 1.381
C14 C15 1.402 1.382
C25 C26 1.418 1.393
C25 C30 1.419 1.394
C26 C27 1.414 1.380
C18 C17 1.420 1.389
C11 C12 1.408 1.380
C11 C10 1.410 1.383
C15 C16 1.412 1.381
C12 C5 1.410 1.390
C30 C29 1.417 1.380
C27 C28 1.408 1.385
C10 C9 1.410 1.383
C17 C16 1.426 1.390
C17 N2 1.353 1.397
C4 C2 1.553 1.530
C4 S1 1.834 1.814
C16 N7 1.478 1.480
C5 S1 1.757 1.762
C5 C8 1.407 1.390
C29 C28 1.412 1.384
C2 N2 1.463 1.465
C2 C1 1.544 1.531
C28 CL1 1.728 1.735
C9 C8 1.409 1.380
N7 O6 1.223 1.218
N7 O5 1.227 1.218
C1 C3 1.540 1.530
C3 N1 1.466 1.469
C7 N1 1.464 1.469
N1 C6 1.459 1.469
C1 H1 1.100 1.089
C1 H2 1.100 1.090
C2 H3 1.100 1.090
C3 H4 1.100 1.090
C3 H5 1.100 1.090
C4 H6 1.100 1.090
C4 H7 1.100 1.090
C6 H9 1.100 1.090
C6 H10 1.100 1.090
C6 H11 1.100 1.089
C7 H12 1.100 1.091
C7 H13 1.100 1.090
C7 H14 1.100 1.090
C8 H15 1.080 1.080
C9 H16 1.080 1.080
C10 H17 1.080 1.079
C11 H18 1.080 1.080
C12 H19 1.080 1.080
N2 H20 1.000 0.970
C13 H21 1.080 1.080
C15 H22 1.080 1.080
C18 H23 1.080 1.080
C19 H24 1.080 1.080
C20 H25 1.080 1.080
C23 H26 1.080 1.080
C24 H27 1.080 1.080
C26 H28 1.080 1.080
C27 H29 1.080 1.080
C29 H30 1.080 1.081
C30 H31 1.079 1.080
C31 H32 1.100 1.090
C31 H33 1.100 1.090
C32 H35 1.100 1.090
C32 H36 1.100 1.090
C33 H37 1.100 1.090
C33 H38 1.100 1.090
C34 H39 1.100 1.090
C34 H40 1.100 1.090
C35 H41 1.100 1.090
C35 H42 1.100 1.091
C37 H43 1.080 1.080
C38 H44 1.080 1.080
C39 H45 1.080 1.081
N6 H46 1.000 0.970

Bond Angles for 1E9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3 S3 O4 119.0 124.2
C24 C23 H26 119.9 119.9
C23 C24 H27 119.9 119.9
C24 C19 H24 120.1 119.9
N3 C35 C34 106.9 109.4
C35 C34 H39 108.6 109.5
C35 C34 H40 108.6 109.5
C34 C35 H41 110.1 109.5
C34 C35 H42 110.1 109.5
N5 S3 O4 112.2 107.6
S3 N5 C42 112.0 106.2
C37 C41 C40 122.6 122.2
C41 C37 H43 121.3 120.2
C37 C36 C39 119.7 119.4
N5 C42 N6 126.1 120.4
C32 N3 C35 107.3 110.9
N3 C35 H41 110.1 109.5
N3 C35 H42 110.1 109.5
N3 C31 H32 109.4 109.5
N3 C31 H33 109.4 109.5
N3 C32 H35 109.8 109.5
N3 C32 H36 109.8 109.5
C36 C39 C38 121.7 120.9
C36 C39 H45 119.2 119.6
N4 C33 H37 108.5 109.5
N4 C33 H38 108.5 109.5
C42 N6 H46 118.6 120.0
C40 C38 H44 121.4 119.7
C22 C21 C25 126.4 120.1
C20 C19 H24 120.2 120.0
C19 C20 H25 119.5 120.0
C33 C32 H35 109.8 109.5
C33 C32 H36 109.8 109.5
C39 C38 H44 121.4 119.8
C21 C20 H25 119.5 120.1
C21 C25 C26 121.5 120.1
C21 C25 C30 119.8 120.1
C14 C13 C18 118.4 120.1
C13 C14 C15 121.5 120.2
C14 C13 H21 120.8 120.0
C13 C18 C17 121.6 119.9
C18 C13 H21 120.8 119.9
C13 C18 H23 119.2 120.1
C14 C15 C16 120.3 120.1
C14 C15 H22 119.8 120.0
C26 C25 C30 118.7 119.8
C25 C26 C27 120.9 119.9
C25 C26 H28 119.6 120.0
C25 C30 C29 120.6 119.9
C25 C30 H31 119.7 120.1
C26 C27 C28 119.8 120.1
C27 C26 H28 119.6 120.1
C26 C27 H29 120.1 119.9
C12 C11 H18 120.2 120.0
C11 C12 H19 120.3 120.0
C11 C10 H17 119.8 119.9
C15 C16 N7 117.3 120.1
C16 C15 H22 119.8 119.9
C30 C29 H30 120.1 119.9
C27 C28 CL1 120.0 119.9
C28 C27 H29 120.1 120.0
C10 C9 H16 119.9 119.9
C17 C16 N7 123.6 120.1
C17 N2 H20 105.2 120.0
C4 C2 N2 111.3 109.5
C4 C2 H3 107.1 109.5
S1 C4 H6 107.4 109.4
S1 C4 H7 107.4 109.5
C16 N7 O6 118.9 120.0
C16 N7 O5 118.0 120.0
C5 C8 H15 120.4 120.0
C29 C28 CL1 119.8 119.9
N2 C2 H3 108.2 109.5
C2 N2 H20 105.1 120.0
C2 C1 C3 115.6 109.4
C2 C1 H1 107.9 109.5
C2 C1 H2 107.9 109.4
C9 C8 H15 120.4 120.0
O5 N7 O6 123.0 120.0
C1 C3 N1 110.3 109.5
C3 C1 H1 107.9 109.5
C3 C1 H2 107.9 109.5
C1 C3 H4 109.3 109.5
C1 C3 H5 109.3 109.5
C3 N1 C6 109.3 111.0
N1 C3 H4 109.2 109.4
N1 C3 H5 109.3 109.4
N1 C6 H9 109.5 109.4
N1 C6 H10 109.5 109.4
N1 C6 H11 109.4 109.5
H1 C1 H2 109.5 109.5
H4 C3 H5 109.5 109.5
H6 C4 H7 109.4 109.5
H9 C6 H10 109.5 109.5
H9 C6 H11 109.5 109.4
H10 C6 H11 109.5 109.5
H12 C7 H13 109.5 109.4
H12 C7 H14 109.5 109.5
H13 C7 H14 109.4 109.5
H32 C31 H33 109.4 109.4
H35 C32 H36 109.5 109.5
H37 C33 H38 109.5 109.5
H39 C34 H40 109.5 109.5
H41 C35 H42 109.4 109.5

Torsion Angles for 1E9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N5 S3 O3 O4 230.6 233.3
C23 C24 C19 H24 179.5 179.7
C23 C22 C21 C25 179.9 180.1
C20 C19 C24 H24 180.0 179.7
C24 C19 C20 H25 179.8 180.3
C32 N3 C35 C34 67.7 59.3
N3 C35 C34 H41 240.4 120.0
N3 C35 C34 H42 119.6 240.1
H39 C34 C35 H40 241.1 120.1
H41 C35 C34 H42 239.2 120.1
N3 C35 C34 N4 300.3 301.6
C34 N4 C33 H37 73.7 180.7
C34 N4 C33 H38 192.6 60.6
O3 S3 N5 O4 133.1 135.9
S3 N5 C42 N6 179.4 180.0
S3 C41 C37 H43 0.3 360.0
O4 S3 N5 C42 115.6 112.0
C41 C37 C36 C39 358.4 0.2
C37 C36 C39 C38 1.5 359.8
C37 C36 C39 H45 181.5 179.8
C42 N5 S3 O4 115.6 112.0
N5 C42 N6 H46 197.5 180.0
C40 C41 C37 H43 181.1 180.0
C41 C40 C38 H44 180.3 180.3
N3 C35 C34 H39 60.8 181.6
N3 C35 C34 H40 179.8 61.6
C34 C35 N3 H41 119.6 240.0
C34 C35 N3 H42 240.4 119.9
C35 N3 C31 H32 307.9 43.9
C35 N3 C31 H33 67.8 283.9
C35 N3 C32 H35 53.7 60.7
C35 N3 C32 H36 174.1 180.7
H41 C35 N3 H42 120.8 240.0
H32 C31 N3 H33 240.1 119.9
C32 N3 C35 H41 308.1 179.3
C32 N3 C35 H42 187.3 299.3
C32 N3 C31 H32 68.2 167.7
C32 N3 C31 H33 188.1 47.8
C33 C32 N3 H35 240.2 240.1
C33 C32 N3 H36 119.8 120.0
H35 C32 N3 H36 239.6 240.0
C36 N4 C33 H37 280.0 56.8
C36 N4 C33 H38 38.9 296.8
C36 C39 C38 H44 179.2 179.9
N4 C33 C32 H35 295.9 298.4
N4 C33 C32 H36 175.5 178.4
H37 C33 N4 H38 241.1 120.0
C42 C40 C38 H44 359.5 359.9
C37 C41 C40 C38 359.6 359.7
C39 C38 C40 H44 180.0 180.0
C22 C21 C20 H25 181.4 180.0
C22 C21 C25 C26 59.5 123.8
C22 C21 C25 C30 237.1 303.5
C24 C19 C20 H24 180.0 180.3
C21 C20 C19 H25 180.0 180.0
C33 C32 N3 C35 293.9 300.7
N3 C32 C33 H35 119.8 119.9
N3 C32 C33 H36 240.2 239.9
H35 C32 C33 H36 120.4 120.0
C36 C39 C38 H45 180.0 180.0
C40 C38 C39 H44 180.0 180.0
S2 C14 C13 H21 359.6 359.7
S2 C14 C15 H22 1.1 0.0
C21 C20 C19 H24 179.8 180.0
C19 C20 C21 H25 180.0 180.0
C25 C21 C20 H25 359.8 360.0
C26 C25 C21 C30 182.4 180.3
C21 C25 C26 C27 178.1 179.9
C21 C25 C26 H28 358.1 0.0
C21 C25 C30 C29 181.7 179.7
C21 C25 C30 H31 1.7 0.0
C14 C13 C18 C17 359.6 359.9
C18 C13 C14 H21 180.0 180.3
C14 C13 C18 H23 179.6 180.0
C13 C14 C15 C16 0.2 360.0
C13 C14 C15 H22 180.2 180.0
C18 C13 C14 C15 0.5 0.0
C14 C13 C18 H21 180.0 179.7
C15 C14 C13 C18 0.5 0.0
C15 C14 C13 H21 180.5 179.7
C14 C15 C16 N7 180.7 180.0
C16 C15 C14 H22 180.0 180.0
C21 C25 C26 C30 177.6 179.7
C26 C25 C30 C29 359.4 359.4
C26 C25 C30 H31 179.4 179.7
C25 C26 C27 C28 359.5 0.1
C27 C26 C25 H28 180.0 179.9
C25 C26 C27 H29 179.6 180.0
C21 C25 C30 C26 182.3 180.3
C30 C25 C26 C27 0.4 0.2
C30 C25 C26 H28 180.5 180.3
C25 C30 C29 H30 180.8 180.3
C27 C26 C25 C30 0.4 0.2
C25 C26 C27 H28 180.0 180.1
C26 C27 C28 CL1 180.4 180.0
C28 C27 C26 H29 180.0 180.1
C17 C18 C13 H21 179.6 180.3
C13 C18 C17 H23 180.0 180.1
C18 C17 C16 N7 179.2 180.0
C18 C17 N2 H20 123.1 171.2
C12 C11 C10 H17 179.4 179.7
C11 C10 C9 H16 180.7 180.1
C14 C15 C16 H22 180.0 180.0
C17 C16 C15 N7 178.3 180.0
C15 C16 N7 O6 354.8 141.9
C15 C16 N7 O5 177.4 321.9
C12 C5 C8 H15 180.5 180.3
C25 C30 C29 H31 180.0 180.3
C30 C29 C28 CL1 179.5 179.7
C28 C27 C26 H28 179.5 180.0
C26 C27 C28 H29 180.0 179.9
C29 C28 C27 CL1 180.3 180.0
C10 C9 C8 H15 179.4 180.0
C13 C18 C17 C16 359.6 0.1
C15 C16 C17 N7 181.8 180.0
C17 C16 C15 H22 179.0 180.0
C16 C17 N2 H20 304.1 351.1
C17 C16 N7 O6 176.6 321.9
C17 C16 N7 O5 359.2 141.9
C17 N2 C2 H3 313.6 34.9
C2 N2 C17 H20 237.8 180.1
N2 C2 C4 H3 241.9 239.9
C4 C2 N2 H20 308.9 335.0
C4 C2 C1 H1 313.4 305.0
C4 C2 C1 H2 71.6 65.0
S1 C4 C2 N2 56.5 300.0
S1 C4 C2 H3 174.7 60.0
H6 C4 S1 H7 117.6 120.0
N7 C16 C15 H22 0.7 0.0
O5 N7 C16 O6 182.6 180.0
C5 S1 C4 H6 161.5 60.1
C5 S1 C4 H7 43.9 300.0
C9 C8 C5 H15 180.0 180.1
C25 C30 C29 C28 0.8 0.6
C27 C28 C29 CL1 179.7 180.0
C29 C28 C27 H29 180.6 180.0
C17 N2 C2 H20 122.2 179.9
C4 C2 N2 H3 117.5 120.0
N2 C2 C1 C3 67.6 65.0
N2 C2 C1 H1 188.5 185.0
N2 C2 C1 H2 306.7 305.0
C2 C1 C3 N1 185.7 180.0
C3 C1 C2 H1 239.1 240.0
C3 C1 C2 H2 120.9 120.0
C2 C1 C3 H4 305.8 300.0
C2 C1 C3 H5 65.5 60.0
H1 C1 C2 H2 241.8 240.0
CL1 C28 C27 H29 0.4 0.0
C5 C8 C9 H15 180.0 179.9
C16 N7 O6 O5 182.7 180.0
C16 N7 O5 O6 177.3 180.0
C2 C1 C3 H1 120.9 120.0
C2 C1 C3 H2 239.1 240.0
C1 C3 N1 C6 182.0 66.0
N1 C3 C1 H4 239.9 240.0
N1 C3 C1 H5 120.1 120.0
H1 C1 C3 H2 118.2 120.0
H4 C3 C1 H5 240.2 239.9
N1 C3 C1 H1 64.8 60.0
N1 C3 C1 H2 306.6 300.0
C1 C3 N1 H4 120.1 120.0
C1 C3 N1 H5 239.9 240.0
C3 N1 C6 H9 180.0 60.0
C3 N1 C6 H10 300.0 180.0
C3 N1 C6 H11 60.0 300.0
H4 C3 N1 H5 119.7 120.0
C7 N1 C3 H4 183.5 70.0
C7 N1 C3 H5 63.8 310.0
C7 N1 C6 H9 57.2 296.0
C7 N1 C6 H10 177.2 56.0
C7 N1 C6 H11 297.2 176.1
C6 N1 C3 H4 61.9 306.0
C6 N1 C3 H5 302.2 186.0
H9 C6 N1 H10 240.0 240.0
H9 C6 N1 H11 120.0 120.0
H10 C6 N1 H11 240.0 239.9
C2 C1 H1 C3 234.4 240.0
C2 C1 H1 H2 117.2 120.0
H1 C1 C3 N1 64.8 60.0
C3 C1 H1 H2 242.8 240.0
H1 C1 C3 H4 184.9 180.0
H1 C1 C3 H5 304.6 300.0
C2 C1 H2 C3 125.6 120.0
C2 C1 H2 H1 242.8 240.0
H2 C1 C3 N1 306.6 300.0
C3 C1 H2 H1 117.2 120.1
H2 C1 C3 H4 66.7 59.9
H2 C1 C3 H5 186.5 180.0
C4 C2 H3 N2 239.9 240.0
H3 C2 N2 H20 191.4 215.0
H3 C2 C1 C3 309.0 305.0
H3 C2 C1 H1 69.9 65.0
H3 C2 C1 H2 188.1 185.0
C1 C3 H4 N1 239.3 240.0
H4 C3 C1 H1 184.9 180.0
H4 C3 C1 H2 66.7 59.9
C1 C3 H4 H5 119.7 120.0
H4 C3 N1 C6 61.9 306.0
N1 C3 H4 H5 240.4 240.0
C1 C3 H5 N1 120.7 120.0
H5 C3 C1 H1 304.6 300.0
H5 C3 C1 H2 186.5 180.0
C1 C3 H5 H4 240.3 240.0
H5 C3 N1 C6 302.2 186.0
N1 C3 H5 H4 119.6 120.0
H6 C4 C2 N2 177.7 59.9
H6 C4 C2 H3 295.8 180.0
S1 C4 H6 H7 243.7 240.0
H7 C4 C2 N2 295.3 180.0
H7 C4 C2 H3 53.5 300.0
S1 C4 H7 H6 116.2 120.0
N1 C6 H9 H10 120.0 120.0
N1 C6 H9 H11 240.0 240.0
H10 C6 H9 H11 120.0 120.0
N1 C6 H10 H9 240.0 240.1
N1 C6 H10 H11 120.0 120.1
H9 C6 H10 H11 240.0 240.0
N1 C6 H11 H9 120.0 120.0
N1 C6 H11 H10 240.0 240.0
H9 C6 H11 H10 120.0 120.0
H13 C7 H12 H14 120.0 120.0
H12 C7 H13 H14 240.0 240.0
H12 C7 H14 H13 120.0 120.0
H16 C9 C8 H15 359.4 0.0
H17 C10 C9 H16 0.7 359.9
H18 C11 C12 H19 0.5 359.3
H18 C11 C10 H17 359.4 0.4
H19 C12 C11 H18 0.5 359.3
H20 N2 C2 H3 191.4 215.0
C14 C13 H21 C18 180.0 180.3
H21 C13 C14 C15 180.5 179.7
H21 C13 C18 C17 179.6 180.3
H21 C13 C18 H23 359.6 0.3
C14 C15 H22 C16 180.0 180.0
H22 C15 C16 N7 0.7 0.0
C13 C18 H23 C17 180.0 179.9
H23 C18 C13 H21 359.6 0.3
H24 C19 C20 H25 359.8 360.0
H25 C20 C19 H24 359.8 360.0
H26 C23 C24 H27 359.9 359.3
H27 C24 C23 H26 359.9 359.3
H27 C24 C19 H24 359.5 0.4
H28 C26 C25 C30 180.5 180.3
C25 C26 H28 C27 180.0 179.9
H28 C26 C27 C28 179.5 180.0
H28 C26 C27 H29 359.5 359.9
C26 C27 H29 C28 180.0 180.1
H29 C27 C26 H28 359.5 359.9
H29 C27 C28 CL1 0.4 0.0
H30 C29 C28 CL1 359.4 360.0
C25 C30 H31 C29 180.0 179.7
H31 C30 C29 H30 0.8 0.0
N3 C31 H32 H33 119.8 240.0
N3 C31 H33 H32 240.2 120.0
H35 C32 N3 C35 53.7 60.7
N3 C32 H35 H36 120.6 120.1
C33 C32 H35 H36 239.4 240.0
H36 C32 N3 C35 174.1 180.7
N3 C32 H36 H35 239.4 240.0
C33 C32 H36 H35 120.6 120.0
N4 C33 H37 H38 118.3 239.9
H37 C33 C32 H35 175.4 58.4
H37 C33 C32 H36 55.0 298.4
N4 C33 H38 H37 241.7 120.0
H38 C33 C32 H35 56.5 178.5
H38 C33 C32 H36 296.1 58.4
C35 C34 H39 H40 118.4 240.0
H39 C34 C35 H41 180.4 61.6
H39 C34 C35 H42 301.2 301.6
C35 C34 H40 H39 241.6 120.0
H40 C34 C35 H41 299.4 301.6
H40 C34 C35 H42 60.1 181.5
N3 C35 H41 C34 117.6 240.0
H41 C35 C34 H39 180.4 61.6
H41 C35 C34 H40 299.4 301.6
C34 C35 H41 H42 121.2 240.0
N3 C35 H41 H42 238.8 120.0
N3 C35 H42 C34 242.3 119.9
H42 C35 C34 H39 301.2 301.6
H42 C35 C34 H40 60.1 181.5
C34 C35 H42 H41 238.9 120.1
N3 C35 H42 H41 121.2 240.0
H43 C37 C41 C40 181.1 180.0
H43 C37 C36 C39 178.5 180.2
C36 C39 H45 C38 180.0 180.0
H45 C39 C38 H44 359.2 359.9