PDB Chemical Component 1E6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1E6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S10 |
C11 |
1.550 |
1.810 |
| S10 |
C7 |
1.761 |
1.762 |
| C11 |
C12 |
1.673 |
1.507 |
| C7 |
C8 |
1.413 |
1.394 |
| C7 |
N6 |
1.379 |
1.327 |
| C8 |
C9 |
1.417 |
1.369 |
| N6 |
C5 |
1.390 |
1.316 |
| C9 |
C2 |
1.440 |
1.404 |
| C5 |
C2 |
1.423 |
1.397 |
| C2 |
C1 |
1.475 |
1.473 |
| O4 |
C1 |
1.203 |
1.215 |
| C1 |
O3 |
1.345 |
1.347 |
| C12 |
O43 |
1.234 |
1.213 |
| C12 |
N15 |
1.373 |
1.348 |
| N15 |
C16 |
1.414 |
1.402 |
| O37 |
C38 |
1.440 |
1.430 |
| O37 |
C21 |
1.423 |
1.360 |
| C16 |
C21 |
1.448 |
1.393 |
| C16 |
C17 |
1.492 |
1.388 |
| C21 |
C20 |
1.423 |
1.386 |
| C17 |
C18 |
1.439 |
1.383 |
| C20 |
C19 |
1.415 |
1.387 |
| C18 |
C19 |
1.451 |
1.388 |
| C18 |
CL3 |
1.740 |
1.736 |
| C19 |
O22 |
1.393 |
1.361 |
| O22 |
C23 |
1.427 |
1.429 |
| C23 |
C24 |
1.514 |
1.530 |
| O28 |
C27 |
1.432 |
1.430 |
| C24 |
C27 |
1.532 |
1.529 |
| C24 |
O44 |
1.420 |
1.429 |
| O3 |
H1 |
0.950 |
0.966 |
| C5 |
H2 |
1.080 |
1.080 |
| C8 |
H3 |
1.080 |
1.079 |
| C9 |
H4 |
1.080 |
1.080 |
| C11 |
H5 |
1.100 |
1.089 |
| C11 |
H6 |
1.100 |
1.090 |
| N15 |
H7 |
1.000 |
0.970 |
| C17 |
H8 |
1.080 |
1.080 |
| C20 |
H9 |
1.080 |
1.079 |
| C23 |
H10 |
1.100 |
1.090 |
| C23 |
H11 |
1.100 |
1.090 |
| C24 |
H12 |
1.100 |
1.091 |
| C27 |
H13 |
1.100 |
1.090 |
| C27 |
H14 |
1.100 |
1.090 |
| O28 |
H15 |
0.950 |
0.967 |
| C38 |
H16 |
1.100 |
1.089 |
| C38 |
H17 |
1.100 |
1.090 |
| C38 |
H18 |
1.100 |
1.090 |
| O44 |
H19 |
0.950 |
0.967 |
Bond Angles for 1E6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S10 |
C11 |
C12 |
116.9 |
109.4 |
| S10 |
C11 |
H5 |
107.5 |
109.5 |
| S10 |
C11 |
H6 |
107.6 |
109.4 |
| C11 |
C12 |
O43 |
103.2 |
120.0 |
| C11 |
C12 |
N15 |
120.5 |
120.0 |
| C12 |
C11 |
H5 |
107.6 |
109.5 |
| C12 |
C11 |
H6 |
107.6 |
109.4 |
| C7 |
C8 |
C9 |
117.8 |
119.3 |
| C7 |
C8 |
H3 |
121.1 |
120.4 |
| C9 |
C8 |
H3 |
121.1 |
120.3 |
| C8 |
C9 |
H4 |
119.4 |
120.7 |
| N6 |
C5 |
H2 |
119.2 |
119.7 |
| C2 |
C1 |
O3 |
116.5 |
120.0 |
| C1 |
O3 |
H1 |
109.5 |
117.1 |
| N15 |
C12 |
O43 |
136.3 |
120.0 |
| C12 |
N15 |
C16 |
126.1 |
120.0 |
| C12 |
N15 |
H7 |
117.0 |
119.9 |
| N15 |
C16 |
C21 |
118.5 |
120.1 |
| N15 |
C16 |
C17 |
122.8 |
120.0 |
| C16 |
N15 |
H7 |
117.0 |
120.0 |
| O37 |
C38 |
H16 |
109.5 |
109.5 |
| O37 |
C38 |
H17 |
109.5 |
109.4 |
| O37 |
C38 |
H18 |
109.5 |
109.4 |
| C17 |
C16 |
C21 |
118.7 |
119.9 |
| C16 |
C21 |
C20 |
118.7 |
119.9 |
| C16 |
C17 |
C18 |
119.9 |
120.0 |
| C16 |
C17 |
H8 |
120.1 |
120.0 |
| C21 |
C20 |
H9 |
118.0 |
120.0 |
| C17 |
C18 |
C19 |
120.1 |
120.1 |
| C17 |
C18 |
CL3 |
118.6 |
120.0 |
| C18 |
C17 |
H8 |
120.0 |
120.0 |
| C20 |
C19 |
O22 |
120.1 |
119.9 |
| C19 |
C18 |
CL3 |
121.3 |
120.0 |
| C18 |
C19 |
O22 |
121.3 |
120.0 |
| C19 |
O22 |
C23 |
114.2 |
117.0 |
| O22 |
C23 |
C24 |
110.0 |
109.5 |
| O22 |
C23 |
H10 |
109.3 |
109.4 |
| O22 |
C23 |
H11 |
109.3 |
109.4 |
| C23 |
C24 |
C27 |
111.4 |
109.4 |
| C23 |
C24 |
O44 |
109.4 |
109.5 |
| C24 |
C23 |
H10 |
109.3 |
109.5 |
| C24 |
C23 |
H11 |
109.3 |
109.5 |
| C23 |
C24 |
H12 |
108.7 |
109.4 |
| O28 |
C27 |
H13 |
110.1 |
109.4 |
| O28 |
C27 |
H14 |
110.1 |
109.4 |
| C27 |
C24 |
O44 |
108.8 |
109.5 |
| C27 |
C24 |
H12 |
108.5 |
109.5 |
| C24 |
C27 |
H13 |
110.1 |
109.5 |
| C24 |
C27 |
H14 |
110.1 |
109.5 |
| O44 |
C24 |
H12 |
110.0 |
109.5 |
| C24 |
O44 |
H19 |
109.5 |
114.0 |
| H5 |
C11 |
H6 |
109.5 |
109.5 |
| H10 |
C23 |
H11 |
109.5 |
109.5 |
| H13 |
C27 |
H14 |
109.5 |
109.5 |
| H16 |
C38 |
H17 |
109.5 |
109.5 |
| H16 |
C38 |
H18 |
109.4 |
109.5 |
| H17 |
C38 |
H18 |
109.5 |
109.5 |
Torsion Angles for 1E6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S10 |
C11 |
C12 |
O43 |
100.2 |
0.1 |
| S10 |
C11 |
C12 |
N15 |
280.1 |
180.0 |
| C12 |
C11 |
S10 |
H5 |
238.9 |
240.0 |
| C12 |
C11 |
S10 |
H6 |
121.1 |
119.9 |
| H5 |
C11 |
S10 |
H6 |
242.2 |
240.0 |
| S10 |
C7 |
C8 |
H3 |
0.1 |
0.3 |
| S10 |
C11 |
C12 |
H5 |
121.1 |
120.0 |
| S10 |
C11 |
C12 |
H6 |
238.9 |
240.1 |
| N15 |
C12 |
C11 |
O43 |
180.0 |
179.9 |
| C11 |
C12 |
N15 |
C16 |
180.3 |
175.5 |
| C11 |
C12 |
N15 |
H7 |
0.3 |
355.6 |
| H5 |
C11 |
C12 |
H6 |
117.9 |
120.1 |
| C9 |
C8 |
C7 |
H3 |
180.0 |
179.7 |
| C7 |
C8 |
C9 |
H4 |
180.0 |
180.1 |
| C7 |
N6 |
C5 |
H2 |
180.1 |
180.0 |
| C7 |
C8 |
C9 |
H3 |
180.0 |
180.3 |
| C2 |
C1 |
O3 |
H1 |
180.3 |
180.0 |
| O4 |
C1 |
O3 |
H1 |
360.0 |
0.2 |
| C11 |
C12 |
O43 |
N15 |
179.9 |
179.9 |
| O43 |
C12 |
C11 |
H5 |
339.1 |
240.1 |
| O43 |
C12 |
C11 |
H6 |
221.3 |
120.0 |
| O43 |
C12 |
N15 |
C16 |
0.2 |
355.4 |
| O43 |
C12 |
N15 |
H7 |
180.2 |
175.5 |
| C11 |
C12 |
N15 |
O43 |
180.1 |
180.1 |
| N15 |
C12 |
C11 |
H5 |
159.1 |
60.0 |
| N15 |
C12 |
C11 |
H6 |
41.2 |
299.9 |
| C12 |
N15 |
C16 |
C21 |
205.1 |
214.4 |
| C12 |
N15 |
C16 |
C17 |
25.1 |
34.8 |
| C16 |
N15 |
C12 |
H7 |
180.0 |
179.9 |
| C16 |
N15 |
C12 |
O43 |
0.2 |
355.4 |
| C12 |
N15 |
C16 |
H7 |
180.0 |
180.1 |
| C17 |
C16 |
N15 |
C21 |
180.0 |
180.4 |
| N15 |
C16 |
C21 |
C20 |
180.2 |
179.8 |
| N15 |
C16 |
C17 |
C18 |
179.8 |
180.0 |
| N15 |
C16 |
C17 |
H8 |
359.8 |
359.9 |
| H16 |
C38 |
O37 |
H17 |
240.0 |
239.9 |
| H16 |
C38 |
O37 |
H18 |
120.0 |
120.0 |
| H17 |
C38 |
O37 |
H18 |
240.0 |
240.0 |
| O37 |
C21 |
C20 |
H9 |
0.0 |
0.0 |
| N15 |
C16 |
C21 |
C17 |
180.0 |
180.4 |
| C21 |
C16 |
N15 |
H7 |
25.1 |
34.3 |
| C21 |
C16 |
C17 |
C18 |
359.8 |
0.4 |
| C21 |
C16 |
C17 |
H8 |
179.8 |
180.3 |
| C16 |
C21 |
C20 |
H9 |
179.9 |
180.3 |
| N15 |
C16 |
C17 |
C21 |
180.0 |
179.6 |
| C17 |
C16 |
N15 |
H7 |
205.1 |
214.6 |
| C17 |
C16 |
C21 |
C20 |
0.2 |
359.4 |
| C16 |
C17 |
C18 |
C19 |
0.1 |
359.9 |
| C16 |
C17 |
C18 |
CL3 |
179.9 |
180.0 |
| C18 |
C17 |
C16 |
H8 |
180.0 |
180.1 |
| C21 |
C20 |
C19 |
O22 |
179.8 |
179.8 |
| C18 |
C17 |
C16 |
C21 |
359.8 |
0.4 |
| C16 |
C17 |
C18 |
H8 |
180.0 |
179.9 |
| C19 |
C18 |
C17 |
CL3 |
180.1 |
179.9 |
| C17 |
C18 |
C19 |
O22 |
180.2 |
180.0 |
| C16 |
C21 |
C20 |
C19 |
359.9 |
0.6 |
| C20 |
C19 |
C18 |
CL3 |
180.2 |
180.0 |
| C18 |
C19 |
C20 |
O22 |
180.1 |
179.9 |
| C20 |
C19 |
O22 |
C23 |
312.6 |
360.0 |
| C17 |
C18 |
C19 |
CL3 |
179.9 |
180.1 |
| C19 |
C18 |
C17 |
H8 |
180.0 |
180.0 |
| C20 |
C19 |
C18 |
O22 |
179.9 |
180.1 |
| C18 |
C19 |
O22 |
C23 |
132.5 |
180.0 |
| C17 |
C18 |
CL3 |
C19 |
180.1 |
179.9 |
| CL3 |
C18 |
C17 |
H8 |
359.9 |
0.1 |
| CL3 |
C18 |
C19 |
O22 |
0.3 |
359.9 |
| O22 |
C19 |
C18 |
CL3 |
0.3 |
359.9 |
| C19 |
O22 |
C23 |
C24 |
197.1 |
180.0 |
| C19 |
O22 |
C23 |
H10 |
317.2 |
300.0 |
| C19 |
O22 |
C23 |
H11 |
77.1 |
60.0 |
| O22 |
C23 |
C24 |
C27 |
59.4 |
185.0 |
| O22 |
C23 |
C24 |
O44 |
299.1 |
65.0 |
| C24 |
C23 |
O22 |
H10 |
239.9 |
240.0 |
| C24 |
C23 |
O22 |
H11 |
120.1 |
120.0 |
| O22 |
C23 |
C24 |
H12 |
179.0 |
305.0 |
| H10 |
C23 |
O22 |
H11 |
240.2 |
240.0 |
| O22 |
C23 |
C24 |
H10 |
120.1 |
120.0 |
| O22 |
C23 |
C24 |
H11 |
239.9 |
240.0 |
| C27 |
C24 |
C23 |
O44 |
120.3 |
120.0 |
| C27 |
C24 |
C23 |
H12 |
240.4 |
240.0 |
| C23 |
C24 |
C27 |
H13 |
317.3 |
295.0 |
| C23 |
C24 |
C27 |
H14 |
196.4 |
55.0 |
| O44 |
C24 |
C23 |
H12 |
120.1 |
120.0 |
| C23 |
C24 |
O44 |
H19 |
180.0 |
60.1 |
| H10 |
C23 |
C24 |
H11 |
119.9 |
120.1 |
| O28 |
C27 |
C24 |
O44 |
197.5 |
295.0 |
| O28 |
C27 |
C24 |
H12 |
317.1 |
55.0 |
| C24 |
C27 |
O28 |
H13 |
240.4 |
120.0 |
| C24 |
C27 |
O28 |
H14 |
119.6 |
240.0 |
| H13 |
C27 |
O28 |
H14 |
239.2 |
120.0 |
| C23 |
C24 |
C27 |
O44 |
239.4 |
240.0 |
| C27 |
C24 |
C23 |
H10 |
299.3 |
65.1 |
| C27 |
C24 |
C23 |
H11 |
179.5 |
305.0 |
| C23 |
C24 |
C27 |
H12 |
119.7 |
120.0 |
| O28 |
C27 |
C24 |
H13 |
119.6 |
240.0 |
| O28 |
C27 |
C24 |
H14 |
240.4 |
120.0 |
| O44 |
C24 |
C27 |
H12 |
240.3 |
240.0 |
| C27 |
C24 |
O44 |
H19 |
58.1 |
300.1 |
| H13 |
C27 |
C24 |
H14 |
120.8 |
240.0 |
| C23 |
C24 |
O44 |
C27 |
121.9 |
120.0 |
| O44 |
C24 |
C23 |
H10 |
179.0 |
305.0 |
| O44 |
C24 |
C23 |
H11 |
59.2 |
185.0 |
| C23 |
C24 |
O44 |
H12 |
240.6 |
240.0 |
| C27 |
C24 |
O44 |
H12 |
118.7 |
120.0 |
| O44 |
C24 |
C27 |
H13 |
77.9 |
55.0 |
| O44 |
C24 |
C27 |
H14 |
317.1 |
175.0 |
| C7 |
C8 |
H3 |
C9 |
180.0 |
179.7 |
| H3 |
C8 |
C9 |
H4 |
360.0 |
359.8 |
| H4 |
C9 |
C8 |
H3 |
360.0 |
359.8 |
| S10 |
C11 |
H5 |
C12 |
233.2 |
240.0 |
| S10 |
C11 |
H5 |
H6 |
116.6 |
120.0 |
| H5 |
C11 |
C12 |
O43 |
339.1 |
240.1 |
| H5 |
C11 |
C12 |
N15 |
159.1 |
60.0 |
| C12 |
C11 |
H5 |
H6 |
243.4 |
240.0 |
| S10 |
C11 |
H6 |
C12 |
126.8 |
119.9 |
| S10 |
C11 |
H6 |
H5 |
243.4 |
240.0 |
| H6 |
C11 |
C12 |
O43 |
221.3 |
120.0 |
| H6 |
C11 |
C12 |
N15 |
41.2 |
299.9 |
| C12 |
C11 |
H6 |
H5 |
116.6 |
120.1 |
| H7 |
N15 |
C12 |
O43 |
180.2 |
175.5 |
| C12 |
N15 |
H7 |
C16 |
180.0 |
179.9 |
| H7 |
N15 |
C16 |
C21 |
25.1 |
34.3 |
| H7 |
N15 |
C16 |
C17 |
205.1 |
214.6 |
| H8 |
C17 |
C16 |
C21 |
179.8 |
180.3 |
| C16 |
C17 |
H8 |
C18 |
180.0 |
180.1 |
| H8 |
C17 |
C18 |
C19 |
180.0 |
180.0 |
| H8 |
C17 |
C18 |
CL3 |
359.9 |
0.1 |
| H9 |
C20 |
C19 |
O22 |
359.8 |
0.0 |
| O22 |
C23 |
H10 |
C24 |
239.5 |
240.0 |
| O22 |
C23 |
H10 |
H11 |
119.7 |
120.0 |
| H10 |
C23 |
C24 |
C27 |
299.3 |
65.1 |
| H10 |
C23 |
C24 |
O44 |
179.0 |
305.0 |
| C24 |
C23 |
H10 |
H11 |
240.2 |
239.9 |
| H10 |
C23 |
C24 |
H12 |
58.9 |
185.0 |
| O22 |
C23 |
H11 |
C24 |
120.5 |
120.0 |
| O22 |
C23 |
H11 |
H10 |
240.3 |
240.1 |
| H11 |
C23 |
C24 |
C27 |
179.5 |
305.0 |
| H11 |
C23 |
C24 |
O44 |
59.2 |
185.0 |
| C24 |
C23 |
H11 |
H10 |
119.8 |
120.1 |
| H11 |
C23 |
C24 |
H12 |
299.0 |
65.0 |
| C23 |
C24 |
H12 |
C27 |
238.7 |
240.0 |
| C23 |
C24 |
H12 |
O44 |
119.8 |
120.0 |
| H12 |
C24 |
C23 |
H10 |
58.9 |
185.0 |
| H12 |
C24 |
C23 |
H11 |
299.0 |
65.0 |
| C27 |
C24 |
H12 |
O44 |
241.1 |
239.9 |
| H12 |
C24 |
C27 |
H13 |
197.6 |
175.0 |
| H12 |
C24 |
C27 |
H14 |
76.7 |
295.0 |
| H12 |
C24 |
O44 |
H19 |
299.4 |
180.0 |
| O28 |
C27 |
H13 |
H14 |
121.2 |
240.0 |
| H13 |
C27 |
C24 |
O44 |
77.9 |
55.0 |
| H13 |
C27 |
C24 |
H12 |
197.6 |
175.0 |
| C24 |
C27 |
H13 |
H14 |
238.8 |
120.1 |
| O28 |
C27 |
H14 |
H13 |
238.8 |
120.0 |
| H14 |
C27 |
C24 |
O44 |
317.1 |
175.0 |
| H14 |
C27 |
C24 |
H12 |
76.7 |
295.0 |
| C24 |
C27 |
H14 |
H13 |
121.2 |
240.0 |
| H15 |
O28 |
C27 |
H13 |
299.6 |
60.0 |
| H15 |
O28 |
C27 |
H14 |
60.4 |
300.0 |
| O37 |
C38 |
H16 |
H17 |
120.0 |
120.0 |
| O37 |
C38 |
H16 |
H18 |
240.0 |
240.0 |
| H17 |
C38 |
H16 |
H18 |
120.0 |
120.0 |
| O37 |
C38 |
H17 |
H16 |
240.0 |
240.0 |
| O37 |
C38 |
H17 |
H18 |
120.0 |
119.9 |
| H16 |
C38 |
H17 |
H18 |
240.0 |
240.0 |
| O37 |
C38 |
H18 |
H16 |
120.0 |
120.0 |
| O37 |
C38 |
H18 |
H17 |
240.0 |
240.1 |
| H16 |
C38 |
H18 |
H17 |
120.0 |
120.1 |
| H19 |
O44 |
C24 |
H12 |
299.4 |
180.0 |