PDB Chemical Component 1DI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1DI

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.481	1.470
N1	HN1	1.000	1.008
N1	HN1A	1.000	1.009
C2	C3	1.580	1.529
C2	C12	1.550	1.507
C2	H2	1.100	1.090
C3	C4	1.552	1.507
C3	H3	1.100	1.091
C3	H3A	1.100	1.090
C4	C5	1.462	1.382
C4	C10	1.471	1.383
C5	C6	1.437	1.383
C5	H5	1.080	1.080
C6	C7	1.439	1.384
C6	H6	1.080	1.080
C7	CL8	1.735	1.736
C7	C9	1.445	1.383
C9	C10	1.441	1.383
C9	H9	1.080	1.081
C10	CL11	1.759	1.736
C12	O13	1.230	1.213
C12	N14	1.413	1.348
N14	C15	1.489	1.466
N14	C22	1.487	1.467
C15	C16	1.516	1.507
C15	H15	1.100	1.090
C16	C17	1.442	1.385
C16	C21	1.432	1.381
C17	C18	1.450	1.381
C17	H17	1.080	1.080
C18	C19	1.451	1.383
C18	H18	1.080	1.081
C19	C20	1.453	1.381
C19	H19	1.080	1.080
C20	C21	1.450	1.386
C20	H20	1.080	1.080
C21	C22	1.520	1.507
C22	H22	1.100	1.090
C15	H151	1.100	1.091
C22	H16	1.100	1.091

Bond Angles for 1DI

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	HN1	109.5	111.1
C2	N1	HN1A	109.5	111.0
N1	C2	C3	111.9	109.5
N1	C2	C12	113.7	109.4
N1	C2	H2	104.7	109.5
HN1	N1	HN1A	109.4	111.0
C3	C2	C12	109.3	109.5
C3	C2	H2	109.5	109.5
C2	C3	C4	115.3	109.5
C2	C3	H3	107.5	109.5
C2	C3	H3A	107.6	109.5
C12	C2	H2	107.5	109.5
C2	C12	O13	113.8	120.1
C2	C12	N14	126.3	120.0
C4	C3	H3	107.6	109.5
C4	C3	H3A	107.6	109.5
C3	C4	C5	118.4	120.0
C3	C4	C10	122.7	120.0
H3	C3	H3A	111.3	109.4
C5	C4	C10	118.9	120.0
C4	C5	C6	120.9	120.0
C4	C5	H5	119.6	120.0
C4	C10	C9	119.3	120.0
C4	C10	CL11	123.3	120.0
C6	C5	H5	119.5	120.0
C5	C6	C7	119.7	120.0
C5	C6	H6	120.2	120.0
C7	C6	H6	120.2	120.0
C6	C7	CL8	119.8	120.0
C6	C7	C9	120.4	120.0
CL8	C7	C9	119.7	120.0
C7	C9	C10	120.8	120.0
C7	C9	H9	119.6	120.0
C10	C9	H9	119.6	120.0
C9	C10	CL11	117.4	120.0
O13	C12	N14	119.9	119.9
C12	N14	C15	120.8	126.6
C12	N14	C22	122.6	126.5
C15	N14	C22	116.6	106.9
N14	C15	C16	100.3	107.7
N14	C15	H15	112.7	109.8
N14	C15	H151	112.7	109.7
N14	C22	C21	100.1	107.7
N14	C22	H22	112.7	109.8
N14	C22	H16	112.8	109.8
C16	C15	H15	112.6	109.9
C15	C16	C17	128.0	131.2
C15	C16	C21	111.2	108.8
C16	C15	H151	112.7	109.8
H15	C15	H151	106.1	109.8
C17	C16	C21	120.8	119.9
C16	C17	C18	119.0	120.1
C16	C17	H17	120.5	119.9
C16	C21	C20	120.8	119.9
C16	C21	C22	111.3	108.9
C18	C17	H17	120.5	120.0
C17	C18	C19	120.4	120.0
C17	C18	H18	119.8	120.1
C19	C18	H18	119.8	119.9
C18	C19	C20	120.2	119.9
C18	C19	H19	119.9	120.0
C20	C19	H19	119.9	120.0
C19	C20	C21	118.8	120.1
C19	C20	H20	120.6	120.0
C21	C20	H20	120.6	119.9
C20	C21	C22	127.9	131.2
C21	C22	H22	112.8	110.0
C21	C22	H16	112.7	109.7
H22	C22	H16	106.0	109.9

Torsion Angles for 1DI

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
HN1	N1	C2	HN1A	240.0	236.0
C3	C2	N1	C12	124.5	120.0
C3	C2	N1	H2	241.5	239.9
N1	C2	C3	C4	304.9	65.0
N1	C2	C3	H3	64.9	185.0
N1	C2	C3	H3A	184.9	305.0
C12	C2	N1	H2	117.0	119.9
N1	C2	C12	O13	29.0	20.1
N1	C2	C12	N14	208.2	200.0
C2	N1	HN1	HN1A	120.0	124.0
HN1	N1	C2	C3	180.0	60.0
HN1	N1	C2	C12	55.5	300.0
HN1	N1	C2	H2	298.5	180.0
C2	N1	HN1A	HN1	240.0	236.0
HN1A	N1	C2	C3	300.0	184.0
HN1A	N1	C2	C12	175.5	64.0
HN1A	N1	C2	H2	58.5	304.1
C3	C2	N1	HN1	180.0	60.0
C3	C2	N1	HN1A	300.0	184.0
N1	C2	C3	C12	233.1	240.1
N1	C2	C3	H2	115.6	120.0
C12	C2	C3	H2	242.5	240.0
C3	C2	C12	O13	263.1	260.1
C3	C2	C12	N14	82.3	80.0
C4	C3	C2	H3	240.0	240.0
C4	C3	C2	H3A	120.0	120.0
C2	C3	C4	C5	268.7	100.0
C2	C3	C4	C10	88.6	279.7
H3	C3	C2	H3A	240.0	240.0
C12	C2	N1	HN1	55.5	300.0
C12	C2	N1	HN1A	175.5	64.0
N1	C2	C12	C3	125.9	120.0
N1	C2	C12	H2	244.6	240.1
C3	C2	C12	H2	118.8	120.1
C12	C2	C3	C4	71.8	185.0
C12	C2	C3	H3	191.8	305.0
C12	C2	C3	H3A	311.8	65.0
O13	C12	C2	N14	180.8	180.1
C2	C12	N14	C15	1.5	180.0
C2	C12	N14	C22	184.0	359.7
H2	C2	N1	HN1	298.5	180.0
H2	C2	N1	HN1A	58.5	304.1
N1	C2	H2	C3	239.9	240.0
N1	C2	H2	C12	121.2	119.9
C3	C2	H2	C12	241.3	239.9
H2	C2	C3	C4	189.4	305.0
H2	C2	C3	H3	309.4	65.0
H2	C2	C3	H3A	69.4	185.0
H2	C2	C12	O13	144.3	140.0
H2	C2	C12	N14	323.5	319.9
C4	C3	C2	C12	71.8	185.0
C4	C3	C2	H2	189.4	305.0
C2	C3	C4	H3	120.0	120.0
C2	C3	C4	H3A	240.0	239.9
H3	C3	C4	H3A	120.0	120.0
C5	C4	C3	C10	180.1	180.3
C3	C4	C5	C6	179.7	180.0
C3	C4	C5	H5	359.7	0.0
C3	C4	C10	C9	180.3	179.7
C3	C4	C10	CL11	0.2	0.1
H3	C3	C2	C12	191.8	305.0
H3	C3	C2	H2	309.4	65.0
C2	C3	H3	C4	235.2	240.0
C2	C3	H3	H3A	117.6	120.0
C4	C3	H3	H3A	242.4	240.0
H3	C3	C4	C5	148.7	340.0
H3	C3	C4	C10	328.6	159.7
H3A	C3	C2	C12	311.8	65.0
H3A	C3	C2	H2	69.4	185.0
C2	C3	H3A	C4	124.8	120.0
C2	C3	H3A	H3	242.4	240.0
C4	C3	H3A	H3	117.6	120.0
H3A	C3	C4	C5	28.7	220.0
H3A	C3	C4	C10	208.6	39.7
C5	C4	C3	H3	148.7	340.0
C5	C4	C3	H3A	28.7	220.0
C3	C4	C5	C10	179.9	179.7
C5	C4	C10	C9	0.2	359.4
C5	C4	C10	CL11	180.1	179.8
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C7	0.0	360.0
C4	C5	C6	H6	180.0	180.0
C10	C4	C3	H3	328.6	159.7
C10	C4	C3	H3A	208.6	39.7
C3	C4	C10	C5	180.1	180.3
C10	C4	C5	C6	359.8	0.3
C10	C4	C5	H5	179.7	180.3
C7	C9	C10	C4	360.0	0.6
C4	C10	C9	H9	179.9	180.3
C9	C10	C4	CL11	180.2	179.7
C6	C5	C4	C10	359.8	0.3
C4	C5	C6	H5	180.0	180.0
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	CL8	180.1	180.0
C5	C6	C7	C9	0.2	0.0
H5	C5	C4	C10	179.7	180.3
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	180.1	180.0
H5	C5	C6	H6	0.1	0.0
C7	C6	C5	H5	180.1	180.0
C5	C6	C7	H6	180.0	180.0
CL8	C7	C6	C9	179.9	180.0
C6	C7	C9	C10	359.8	359.7
C6	C7	C9	H9	179.8	180.0
H6	C6	C5	H5	0.1	0.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	CL8	0.1	359.9
H6	C6	C7	C9	180.2	180.0
CL8	C7	C6	H6	0.1	359.9
C6	C7	CL8	C9	180.1	180.0
CL8	C7	C9	C10	179.9	179.7
CL8	C7	C9	H9	359.9	360.0
C4	C10	C9	C7	360.0	0.6
C9	C7	C6	H6	180.2	180.0
C6	C7	C9	CL8	179.9	180.0
C10	C9	C7	H9	180.0	179.7
C7	C9	C10	CL11	180.1	180.3
C4	C10	C9	CL11	179.9	180.3
C7	C9	C10	H9	180.0	180.3
C7	C9	H9	C10	180.0	179.7
H9	C9	C10	CL11	0.1	360.0
C4	C10	CL11	C9	180.2	179.7
CL11	C10	C9	H9	0.1	360.0
O13	C12	C2	H2	144.3	140.0
C2	C12	O13	N14	179.3	179.9
O13	C12	N14	C15	180.6	359.9
O13	C12	N14	C22	3.2	179.6
N14	C12	C2	H2	323.5	319.9
C2	C12	N14	O13	180.8	180.1
C15	N14	C12	C22	177.5	180.3
C12	N14	C15	C16	174.5	180.0
C12	N14	C15	H15	294.5	299.7
C12	N14	C15	H151	54.5	60.5
C12	N14	C22	C21	185.5	179.8
C12	N14	C22	H22	305.6	299.5
C12	N14	C22	H16	65.5	60.5
C12	N14	C15	C22	182.4	179.8
C15	N14	C22	C21	8.0	359.6
C15	N14	C22	H22	128.0	119.3
C15	N14	C22	H16	248.0	240.2
C16	C15	N14	H15	240.0	240.3
N14	C15	C16	C17	184.4	180.0
N14	C15	C16	C21	4.3	0.0
C16	C15	N14	H151	120.0	119.5
H15	C15	N14	H151	240.0	239.2
C12	N14	C22	C15	177.6	180.2
C22	N14	C15	C16	352.1	0.3
C22	N14	C15	H15	112.1	119.9
C22	N14	C15	H151	232.1	240.7
C16	C21	C22	N14	355.4	0.5
C20	C21	C22	N14	175.4	180.1
C21	C22	N14	H22	240.0	240.3
C21	C22	N14	H16	120.0	119.3
H22	C22	N14	H16	240.0	239.1
C16	C15	N14	C22	352.1	0.3
N14	C15	C16	H15	120.0	119.6
N14	C15	C16	H151	240.0	240.5
H15	C15	C16	H151	120.0	120.9
C17	C16	C15	C21	180.1	180.0
C15	C16	C17	C18	179.9	180.0
C15	C16	C17	H17	359.9	0.0
C15	C16	C21	C20	180.1	180.0
C15	C16	C21	C22	0.2	359.7
H15	C15	N14	C22	112.1	119.9
N14	C15	H15	C16	247.5	241.7
N14	C15	H15	H151	123.7	120.8
H15	C15	C16	C17	64.4	60.4
H15	C15	C16	C21	244.3	240.4
C16	C15	H15	H151	236.3	239.1
C17	C16	C15	H15	64.4	60.4
C15	C16	C17	C21	179.9	180.0
C17	C16	C15	H151	304.5	299.5
C17	C16	C21	C20	0.0	360.0
C17	C16	C21	C22	180.1	179.7
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	C19	360.0	0.0
C16	C17	C18	H18	180.0	179.9
N14	C22	C21	C16	355.4	0.5
C21	C16	C15	H15	244.3	240.4
C15	C16	C21	C17	180.1	180.0
C21	C16	C15	H151	124.4	119.5
C21	C16	C17	C18	360.0	360.0
C21	C16	C17	H17	180.0	180.0
C19	C20	C21	C16	360.0	360.0
C16	C21	C20	H20	180.0	180.0
C20	C21	C16	C22	179.9	180.3
C16	C21	C22	H22	235.4	240.8
C16	C21	C22	H16	115.4	119.8
C18	C17	C16	C21	360.0	360.0
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	H18	180.0	180.2
C17	C18	C19	C20	0.1	359.9
C17	C18	C19	H19	180.1	180.0
H17	C17	C16	C21	180.0	180.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C19	179.9	180.1
H17	C17	C18	H18	359.9	359.9
C19	C18	C17	H17	179.9	180.1
C17	C18	C19	H18	180.0	179.8
C20	C19	C18	H19	180.0	179.9
C18	C19	C20	C21	360.0	0.1
C18	C19	C20	H20	180.0	180.1
H18	C18	C17	H17	359.9	359.9
C17	C18	H18	C19	180.0	180.2
H18	C18	C19	C20	180.1	180.1
H18	C18	C19	H19	0.0	0.1
C16	C21	C20	C19	360.0	360.0
C20	C19	C18	H18	180.1	180.1
C18	C19	C20	H19	180.0	180.1
C21	C20	C19	H20	180.0	180.0
C19	C20	C21	C22	179.9	180.3
H19	C19	C18	H18	0.0	0.1
C18	C19	H19	C20	180.0	179.9
H19	C19	C20	C21	180.0	180.0
H19	C19	C20	H20	360.0	0.0
N14	C22	C21	C20	175.4	180.1
C16	C21	C20	C22	180.1	179.6
C21	C20	C19	H19	180.0	180.0
C19	C20	C21	H20	180.0	180.0
C20	C21	C22	H22	55.5	60.5
C20	C21	C22	H16	295.5	299.5
H20	C20	C19	H19	360.0	0.0
C19	C20	H20	C21	180.0	180.0
H20	C20	C21	C22	359.9	0.3
N14	C22	C21	H22	120.0	119.7
N14	C22	C21	H16	240.0	240.6
C16	C21	C22	C20	179.9	180.3
C22	C21	C20	H20	359.9	0.3
H22	C22	C21	H16	120.0	121.0
N14	C22	H22	C21	247.6	241.7
N14	C22	H22	H16	123.8	120.8
C21	C22	H22	H16	236.2	239.2
H151	C15	N14	C22	232.1	240.7
N14	C15	H151	C16	112.6	118.3
N14	C15	H151	H15	236.3	239.2
C16	C15	H151	H15	123.7	120.9
H151	C15	C16	C17	304.5	299.5
H151	C15	C16	C21	124.4	119.5
N14	C22	H16	C21	112.4	118.1
N14	C22	H16	H22	236.2	239.1
C21	C22	H16	H22	123.8	121.0