PDB Chemical Component 1DF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1DF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CV |
OM |
1.420 |
1.429 |
| OM |
CM2 |
1.373 |
1.360 |
| CM2 |
CZ |
1.374 |
1.394 |
| CM2 |
CO2 |
1.400 |
1.381 |
| O3 |
CZ |
1.369 |
1.358 |
| CZ |
CM1 |
1.373 |
1.388 |
| CO2 |
C1 |
1.360 |
1.398 |
| O2 |
CC |
1.284 |
1.215 |
| CM1 |
N |
1.440 |
1.481 |
| CM1 |
CO1 |
1.401 |
1.378 |
| O11 |
N |
1.313 |
1.218 |
| C1 |
CO1 |
1.416 |
1.397 |
| C1 |
CC |
1.528 |
1.474 |
| N |
O22 |
1.298 |
1.218 |
| CC |
O1 |
1.264 |
1.347 |
| CO1 |
H1 |
1.080 |
1.080 |
| CO2 |
H2 |
1.080 |
1.080 |
| CV |
H3 |
1.101 |
1.090 |
| CV |
H4 |
1.100 |
1.090 |
| CV |
H5 |
1.100 |
1.090 |
| O1 |
H6 |
0.950 |
0.967 |
| O3 |
H7 |
0.950 |
0.967 |
Bond Angles for 1DF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OM |
CM2 |
CZ |
117.1 |
120.0 |
| CM2 |
CO2 |
H2 |
120.2 |
120.1 |
| CZ |
CM1 |
N |
119.7 |
119.9 |
| CO2 |
C1 |
CC |
117.0 |
120.1 |
| CM1 |
N |
O22 |
118.5 |
120.0 |
| CM1 |
CO1 |
H1 |
120.6 |
120.0 |
| O11 |
N |
O22 |
119.5 |
120.0 |
| CO1 |
C1 |
CC |
122.5 |
120.1 |
| C1 |
CO1 |
H1 |
120.6 |
120.0 |
| C1 |
CC |
O1 |
121.0 |
120.0 |
| CC |
O1 |
H6 |
109.5 |
117.0 |
| H3 |
CV |
H4 |
109.4 |
109.5 |
| H3 |
CV |
H5 |
109.4 |
109.4 |
| H4 |
CV |
H5 |
109.5 |
109.5 |
Torsion Angles for 1DF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OM |
CM2 |
CO2 |
H2 |
0.7 |
0.3 |
| CZ |
CM2 |
CO2 |
H2 |
179.8 |
179.5 |
| CM2 |
CZ |
CM1 |
N |
177.8 |
179.5 |
| CM2 |
CO2 |
C1 |
CC |
180.6 |
180.2 |
| O3 |
CZ |
CM1 |
N |
331.8 |
0.3 |
| CZ |
CM1 |
N |
O22 |
191.0 |
180.0 |
| CZ |
CM1 |
CO1 |
H1 |
179.4 |
180.0 |
| CO1 |
C1 |
CO2 |
CC |
179.0 |
179.7 |
| CO2 |
C1 |
CO1 |
H1 |
180.8 |
180.3 |
| CO2 |
C1 |
CC |
O1 |
203.8 |
179.7 |
| O2 |
CC |
O1 |
H6 |
0.0 |
0.0 |
| N |
CM1 |
CO1 |
H1 |
1.6 |
360.0 |
| O11 |
N |
CM1 |
O22 |
177.6 |
180.0 |
| CM1 |
CO1 |
C1 |
CC |
179.8 |
180.0 |
| C1 |
CO1 |
CM1 |
H1 |
180.0 |
180.0 |
| CM1 |
N |
O11 |
O22 |
182.5 |
180.0 |
| CO2 |
C1 |
CO1 |
CC |
181.1 |
180.3 |
| CM1 |
CO1 |
C1 |
H1 |
180.0 |
180.0 |
| CO1 |
C1 |
CC |
O1 |
24.8 |
0.0 |
| CC |
C1 |
CO1 |
H1 |
359.7 |
0.0 |
| C1 |
CC |
O1 |
H6 |
180.3 |
180.0 |
| H1 |
CO1 |
C1 |
CC |
359.7 |
0.0 |
| H2 |
CO2 |
C1 |
CC |
0.6 |
0.3 |
| H4 |
CV |
H3 |
H5 |
120.0 |
120.0 |
| H3 |
CV |
H4 |
H5 |
240.0 |
240.0 |
| H3 |
CV |
H5 |
H4 |
120.0 |
120.0 |