PDB Chemical Component 1CY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1CY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
N1 |
1.494 |
1.467 |
| C2 |
N1 |
1.271 |
1.307 |
| N3 |
C2 |
1.275 |
1.344 |
| C2 |
N7 |
1.334 |
1.381 |
| C4 |
N3 |
1.280 |
1.321 |
| N8 |
C4 |
1.347 |
1.367 |
| C4 |
N5 |
1.395 |
1.375 |
| C11 |
N5 |
1.398 |
1.399 |
| N5 |
C6 |
1.504 |
1.471 |
| C6 |
C10 |
1.552 |
1.530 |
| C6 |
C9 |
1.550 |
1.530 |
| N7 |
HN7 |
1.000 |
0.970 |
| N7 |
HN7A |
1.000 |
0.970 |
| N8 |
HN8 |
1.000 |
0.970 |
| N8 |
HN8A |
1.000 |
0.970 |
| C9 |
H9 |
1.100 |
1.089 |
| C9 |
H9A |
1.100 |
1.090 |
| C9 |
H9B |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.091 |
| C10 |
H10A |
1.100 |
1.090 |
| C10 |
H10B |
1.100 |
1.090 |
| C16 |
C11 |
1.392 |
1.389 |
| C12 |
C11 |
1.391 |
1.388 |
| C13 |
C12 |
1.366 |
1.381 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.369 |
1.385 |
| C13 |
H13 |
1.080 |
1.080 |
| CL17 |
C14 |
1.727 |
1.736 |
| C14 |
C15 |
1.389 |
1.383 |
| C15 |
C16 |
1.387 |
1.381 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.080 |
Bond Angles for 1CY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N7 |
117.2 |
119.0 |
| C2 |
N7 |
HN7 |
120.0 |
120.0 |
| C2 |
N7 |
HN7A |
120.0 |
120.0 |
| C4 |
N5 |
C6 |
119.7 |
117.6 |
| N5 |
C6 |
C10 |
111.8 |
109.7 |
| N5 |
C6 |
C9 |
113.2 |
109.7 |
| C9 |
C6 |
C10 |
108.7 |
109.7 |
| C6 |
C10 |
H10 |
109.5 |
109.5 |
| C6 |
C10 |
H10A |
109.5 |
109.5 |
| C6 |
C10 |
H10B |
109.5 |
109.5 |
| C6 |
C9 |
H9 |
109.5 |
109.4 |
| C6 |
C9 |
H9A |
109.5 |
109.5 |
| C6 |
C9 |
H9B |
109.5 |
109.5 |
| HN7 |
N7 |
HN7A |
120.0 |
120.0 |
| HN8 |
N8 |
HN8A |
120.0 |
120.0 |
| H9 |
C9 |
H9A |
109.5 |
109.5 |
| H9 |
C9 |
H9B |
109.4 |
109.5 |
| H9A |
C9 |
H9B |
109.4 |
109.5 |
| H10 |
C10 |
H10A |
109.5 |
109.4 |
| H10 |
C10 |
H10B |
109.5 |
109.5 |
| H10A |
C10 |
H10B |
109.5 |
109.5 |
| C13 |
C12 |
H12 |
119.4 |
120.0 |
| C14 |
C13 |
H13 |
120.0 |
119.9 |
| C14 |
C15 |
C16 |
120.0 |
120.1 |
| C14 |
C15 |
H15 |
120.0 |
119.9 |
| C16 |
C15 |
H15 |
120.0 |
120.0 |
| C15 |
C16 |
H16 |
120.1 |
120.0 |
Torsion Angles for 1CY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N7 |
HN7 |
180.0 |
180.0 |
| N3 |
C2 |
N7 |
HN7A |
0.0 |
0.1 |
| HN7 |
N7 |
C2 |
HN7A |
180.0 |
179.9 |
| C4 |
N3 |
C2 |
N7 |
180.5 |
192.9 |
| C4 |
N5 |
C6 |
C10 |
245.0 |
280.5 |
| C4 |
N5 |
C6 |
C9 |
121.8 |
159.9 |
| C9 |
C6 |
N5 |
C10 |
236.8 |
239.4 |
| N5 |
C6 |
C10 |
H10 |
300.6 |
60.0 |
| N5 |
C6 |
C10 |
H10A |
60.6 |
179.9 |
| N5 |
C6 |
C10 |
H10B |
180.6 |
300.0 |
| N5 |
C6 |
C9 |
H9 |
57.5 |
65.9 |
| N5 |
C6 |
C9 |
H9A |
177.5 |
186.0 |
| N5 |
C6 |
C9 |
H9B |
297.5 |
305.9 |
| N5 |
C6 |
C10 |
C9 |
234.3 |
239.4 |
| C10 |
C6 |
C9 |
H9 |
292.6 |
305.4 |
| C10 |
C6 |
C9 |
H9A |
52.7 |
65.4 |
| C10 |
C6 |
C9 |
H9B |
172.6 |
185.4 |
| H10 |
C10 |
C6 |
H10A |
240.0 |
240.1 |
| H10 |
C10 |
C6 |
H10B |
120.0 |
120.0 |
| H10A |
C10 |
C6 |
H10B |
240.0 |
240.0 |
| N5 |
C6 |
C9 |
C10 |
124.8 |
120.6 |
| C9 |
C6 |
C10 |
H10 |
66.3 |
180.6 |
| C9 |
C6 |
C10 |
H10A |
186.3 |
300.5 |
| C9 |
C6 |
C10 |
H10B |
306.3 |
60.6 |
| H9 |
C9 |
C6 |
H9A |
240.0 |
240.0 |
| H9 |
C9 |
C6 |
H9B |
120.0 |
120.0 |
| H9A |
C9 |
C6 |
H9B |
240.0 |
240.0 |
| C2 |
N7 |
HN7 |
HN7A |
180.0 |
180.1 |
| C2 |
N7 |
HN7A |
HN7 |
180.0 |
179.9 |
| H9 |
C9 |
C6 |
C10 |
292.6 |
305.4 |
| C6 |
C9 |
H9 |
H9A |
120.0 |
120.0 |
| C6 |
C9 |
H9 |
H9B |
240.0 |
240.0 |
| H9A |
C9 |
H9 |
H9B |
120.0 |
120.0 |
| H9A |
C9 |
C6 |
C10 |
52.7 |
65.4 |
| C6 |
C9 |
H9A |
H9 |
239.9 |
240.0 |
| C6 |
C9 |
H9A |
H9B |
120.0 |
120.0 |
| H9 |
C9 |
H9A |
H9B |
240.0 |
240.0 |
| H9B |
C9 |
C6 |
C10 |
172.6 |
185.4 |
| C6 |
C9 |
H9B |
H9 |
120.0 |
120.0 |
| C6 |
C9 |
H9B |
H9A |
240.0 |
240.0 |
| H9 |
C9 |
H9B |
H9A |
120.0 |
120.0 |
| C6 |
C10 |
H10 |
H10A |
120.0 |
120.0 |
| C6 |
C10 |
H10 |
H10B |
240.0 |
240.0 |
| H10A |
C10 |
H10 |
H10B |
120.0 |
120.0 |
| C6 |
C10 |
H10A |
H10 |
240.0 |
240.0 |
| C6 |
C10 |
H10A |
H10B |
120.0 |
120.0 |
| H10 |
C10 |
H10A |
H10B |
240.0 |
240.0 |
| C6 |
C10 |
H10B |
H10 |
120.0 |
120.0 |
| C6 |
C10 |
H10B |
H10A |
240.0 |
240.0 |
| H10 |
C10 |
H10B |
H10A |
120.0 |
119.9 |
| C14 |
C13 |
C12 |
H12 |
180.0 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
360.0 |
0.0 |
| CL17 |
C14 |
C13 |
H13 |
359.5 |
0.0 |
| CL17 |
C14 |
C15 |
H15 |
0.6 |
359.9 |
| C15 |
C14 |
C13 |
H13 |
179.7 |
180.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
179.8 |
| C14 |
C15 |
C16 |
H16 |
179.9 |
180.0 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.2 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
179.8 |
| H15 |
C15 |
C16 |
H16 |
359.9 |
359.9 |
| H16 |
C16 |
C15 |
H15 |
359.9 |
359.9 |