PDB Chemical Component 1CS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1CS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5' |
O4' |
1.417 |
1.430 |
| C5' |
H5'1 |
1.115 |
1.090 |
| C5' |
H5'2 |
1.115 |
1.089 |
| C5' |
H5'3 |
1.115 |
1.090 |
| O4' |
C4' |
1.446 |
1.353 |
| C4' |
N5' |
1.422 |
1.328 |
| C4' |
N3' |
1.376 |
1.327 |
| N5' |
C6' |
1.440 |
1.320 |
| C6' |
C7' |
1.428 |
1.507 |
| C6' |
N1' |
1.422 |
1.321 |
| C7' |
H7'1 |
1.115 |
1.091 |
| C7' |
H7'2 |
1.115 |
1.090 |
| C7' |
H7'3 |
1.115 |
1.089 |
| N1' |
C2' |
1.442 |
1.330 |
| C2' |
N10 |
1.348 |
1.385 |
| C2' |
N3' |
1.412 |
1.328 |
| N10 |
C9 |
1.351 |
1.348 |
| N10 |
H10 |
1.020 |
0.970 |
| C9 |
O9 |
1.246 |
1.215 |
| C9 |
N8 |
1.354 |
1.347 |
| N8 |
S7 |
1.664 |
1.656 |
| N8 |
HN8 |
1.019 |
0.970 |
| S7 |
O7A |
1.443 |
1.421 |
| S7 |
O7B |
1.452 |
1.421 |
| S7 |
C2 |
1.755 |
1.762 |
| C2 |
C3 |
1.443 |
1.382 |
| C2 |
C1 |
1.469 |
1.382 |
| C3 |
C4 |
1.474 |
1.382 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C5 |
1.475 |
1.383 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.416 |
1.382 |
| C5 |
H5 |
1.103 |
1.079 |
| C6 |
C1 |
1.444 |
1.384 |
| C6 |
H6 |
1.102 |
1.080 |
| C1 |
CL11 |
1.704 |
1.736 |
Bond Angles for 1CS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4' |
C5' |
H5'1 |
108.3 |
109.5 |
| O4' |
C5' |
H5'2 |
120.4 |
109.5 |
| O4' |
C5' |
H5'3 |
108.3 |
109.5 |
| C5' |
O4' |
C4' |
120.4 |
106.8 |
| H5'1 |
C5' |
H5'2 |
108.3 |
109.5 |
| H5'1 |
C5' |
H5'3 |
101.7 |
109.5 |
| H5'2 |
C5' |
H5'3 |
108.3 |
109.5 |
| O4' |
C4' |
N5' |
118.5 |
120.1 |
| O4' |
C4' |
N3' |
120.6 |
120.0 |
| N5' |
C4' |
N3' |
120.9 |
119.9 |
| C4' |
N5' |
C6' |
117.7 |
120.1 |
| C4' |
N3' |
C2' |
122.3 |
119.8 |
| N5' |
C6' |
C7' |
117.6 |
119.9 |
| N5' |
C6' |
N1' |
121.8 |
120.2 |
| C7' |
C6' |
N1' |
120.6 |
119.9 |
| C6' |
C7' |
H7'1 |
109.2 |
109.5 |
| C6' |
C7' |
H7'2 |
117.6 |
109.5 |
| C6' |
C7' |
H7'3 |
109.3 |
109.5 |
| C6' |
N1' |
C2' |
118.1 |
120.1 |
| H7'1 |
C7' |
H7'2 |
109.3 |
109.4 |
| H7'1 |
C7' |
H7'3 |
100.8 |
109.5 |
| H7'2 |
C7' |
H7'3 |
109.3 |
109.5 |
| N1' |
C2' |
N10 |
119.8 |
120.1 |
| N1' |
C2' |
N3' |
119.2 |
119.9 |
| N10 |
C2' |
N3' |
121.1 |
120.0 |
| C2' |
N10 |
C9 |
125.1 |
120.0 |
| C2' |
N10 |
H10 |
106.7 |
120.0 |
| C9 |
N10 |
H10 |
106.7 |
120.0 |
| N10 |
C9 |
O9 |
128.9 |
120.0 |
| N10 |
C9 |
N8 |
107.6 |
120.0 |
| O9 |
C9 |
N8 |
123.5 |
120.0 |
| C9 |
N8 |
S7 |
124.3 |
120.0 |
| C9 |
N8 |
HN8 |
106.8 |
120.0 |
| S7 |
N8 |
HN8 |
128.9 |
120.0 |
| N8 |
S7 |
O7A |
123.1 |
105.8 |
| N8 |
S7 |
O7B |
84.9 |
105.7 |
| N8 |
S7 |
C2 |
107.4 |
107.4 |
| O7A |
S7 |
O7B |
119.4 |
125.4 |
| O7A |
S7 |
C2 |
118.3 |
105.7 |
| O7B |
S7 |
C2 |
96.5 |
105.8 |
| S7 |
C2 |
C3 |
109.8 |
120.0 |
| S7 |
C2 |
C1 |
131.1 |
120.0 |
| C3 |
C2 |
C1 |
119.1 |
120.0 |
| C2 |
C3 |
C4 |
120.2 |
120.0 |
| C2 |
C3 |
H3 |
118.8 |
120.0 |
| C2 |
C1 |
C6 |
120.3 |
120.0 |
| C2 |
C1 |
CL11 |
121.7 |
120.0 |
| C4 |
C3 |
H3 |
120.9 |
120.0 |
| C3 |
C4 |
C5 |
119.4 |
120.0 |
| C3 |
C4 |
H4 |
120.3 |
120.0 |
| C5 |
C4 |
H4 |
120.3 |
120.0 |
| C4 |
C5 |
C6 |
119.6 |
120.0 |
| C4 |
C5 |
H5 |
122.3 |
120.0 |
| C6 |
C5 |
H5 |
118.2 |
120.0 |
| C5 |
C6 |
C1 |
121.5 |
119.9 |
| C5 |
C6 |
H6 |
118.3 |
120.0 |
| C1 |
C6 |
H6 |
120.3 |
120.0 |
| C6 |
C1 |
CL11 |
117.9 |
120.0 |
Torsion Angles for 1CS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H5'1 |
C5' |
O4' |
H5'2 |
234.8 |
240.0 |
| H5'1 |
C5' |
O4' |
H5'3 |
109.5 |
120.0 |
| H5'2 |
C5' |
O4' |
H5'3 |
234.7 |
240.0 |
| C5' |
O4' |
C4' |
N5' |
359.9 |
180.1 |
| C5' |
O4' |
C4' |
N3' |
179.7 |
359.7 |
| O4' |
C5' |
H5'1 |
H5'2 |
132.1 |
120.0 |
| O4' |
C5' |
H5'1 |
H5'3 |
246.0 |
240.0 |
| H5'1 |
C5' |
O4' |
C4' |
54.7 |
180.0 |
| H5'2 |
C5' |
H5'1 |
H5'3 |
114.0 |
120.0 |
| O4' |
C5' |
H5'2 |
H5'1 |
234.8 |
240.0 |
| O4' |
C5' |
H5'2 |
H5'3 |
125.3 |
120.0 |
| H5'2 |
C5' |
O4' |
C4' |
180.0 |
300.0 |
| H5'1 |
C5' |
H5'2 |
H5'3 |
250.5 |
240.0 |
| O4' |
C5' |
H5'3 |
H5'1 |
113.9 |
120.0 |
| O4' |
C5' |
H5'3 |
H5'2 |
227.9 |
240.0 |
| H5'3 |
C5' |
O4' |
C4' |
305.3 |
60.0 |
| H5'1 |
C5' |
H5'3 |
H5'2 |
114.0 |
120.0 |
| C4' |
O4' |
C5' |
H5'1 |
54.7 |
180.0 |
| C4' |
O4' |
C5' |
H5'2 |
180.0 |
300.0 |
| C4' |
O4' |
C5' |
H5'3 |
305.3 |
60.0 |
| N5' |
C4' |
O4' |
N3' |
180.2 |
180.4 |
| O4' |
C4' |
N5' |
C6' |
179.7 |
180.0 |
| O4' |
C4' |
N3' |
C2' |
180.1 |
179.8 |
| O4' |
C4' |
N5' |
N3' |
179.8 |
179.6 |
| N5' |
C4' |
N3' |
C2' |
359.9 |
359.4 |
| C4' |
N5' |
C6' |
C7' |
179.9 |
180.0 |
| C4' |
N5' |
C6' |
N1' |
0.2 |
360.0 |
| O4' |
C4' |
N3' |
N5' |
180.2 |
180.4 |
| N3' |
C4' |
N5' |
C6' |
359.9 |
0.3 |
| N1' |
C2' |
N3' |
C4' |
0.1 |
0.5 |
| N10 |
C2' |
N3' |
C4' |
180.2 |
180.4 |
| C6' |
N5' |
C4' |
N3' |
359.9 |
0.3 |
| C7' |
C6' |
N5' |
N1' |
179.7 |
180.0 |
| N5' |
C6' |
C7' |
H7'1 |
54.7 |
90.1 |
| N5' |
C6' |
C7' |
H7'2 |
180.0 |
210.0 |
| N5' |
C6' |
C7' |
H7'3 |
305.3 |
330.0 |
| N5' |
C6' |
N1' |
C2' |
359.8 |
360.0 |
| N5' |
C6' |
C7' |
N1' |
180.3 |
180.0 |
| C7' |
C6' |
N1' |
C2' |
180.2 |
180.0 |
| H7'1 |
C7' |
C6' |
H7'2 |
234.7 |
240.1 |
| H7'1 |
C7' |
C6' |
H7'3 |
109.4 |
120.0 |
| H7'2 |
C7' |
C6' |
H7'3 |
234.7 |
240.0 |
| N5' |
C6' |
N1' |
C7' |
179.7 |
180.0 |
| N1' |
C6' |
C7' |
H7'1 |
234.4 |
270.0 |
| N1' |
C6' |
C7' |
H7'2 |
359.7 |
30.0 |
| N1' |
C6' |
C7' |
H7'3 |
125.0 |
150.0 |
| C6' |
N1' |
C2' |
N10 |
179.9 |
179.9 |
| C6' |
N1' |
C2' |
N3' |
0.0 |
359.8 |
| H7'1 |
C7' |
C6' |
N1' |
234.4 |
270.0 |
| C6' |
C7' |
H7'1 |
H7'2 |
129.9 |
120.0 |
| C6' |
C7' |
H7'1 |
H7'3 |
245.0 |
240.0 |
| H7'2 |
C7' |
H7'1 |
H7'3 |
115.0 |
120.0 |
| H7'2 |
C7' |
C6' |
N1' |
359.7 |
30.0 |
| C6' |
C7' |
H7'2 |
H7'1 |
234.8 |
240.0 |
| C6' |
C7' |
H7'2 |
H7'3 |
125.3 |
120.0 |
| H7'1 |
C7' |
H7'2 |
H7'3 |
250.5 |
240.0 |
| H7'3 |
C7' |
C6' |
N1' |
125.0 |
150.0 |
| C6' |
C7' |
H7'3 |
H7'1 |
115.0 |
120.0 |
| C6' |
C7' |
H7'3 |
H7'2 |
230.0 |
240.0 |
| H7'1 |
C7' |
H7'3 |
H7'2 |
115.1 |
120.0 |
| C4' |
N3' |
C2' |
N1' |
0.1 |
0.5 |
| N10 |
C2' |
N1' |
N3' |
179.9 |
180.2 |
| N1' |
C2' |
N10 |
C9 |
180.3 |
180.0 |
| N1' |
C2' |
N10 |
H10 |
55.0 |
0.1 |
| C4' |
N3' |
C2' |
N10 |
180.2 |
180.4 |
| N1' |
C2' |
N10 |
N3' |
180.1 |
179.8 |
| C9 |
N10 |
C2' |
H10 |
125.3 |
179.9 |
| C2' |
N10 |
C9 |
O9 |
0.2 |
0.1 |
| C2' |
N10 |
C9 |
N8 |
179.2 |
180.1 |
| N1' |
C2' |
N3' |
N10 |
179.9 |
180.2 |
| N3' |
C2' |
N10 |
C9 |
0.2 |
0.2 |
| N3' |
C2' |
N10 |
H10 |
235.0 |
180.3 |
| C9 |
N10 |
C2' |
N3' |
0.2 |
0.2 |
| C2' |
N10 |
C9 |
H10 |
234.8 |
180.1 |
| O9 |
C9 |
N10 |
N8 |
181.0 |
180.0 |
| N10 |
C9 |
N8 |
S7 |
181.1 |
174.8 |
| N10 |
C9 |
N8 |
HN8 |
1.0 |
354.8 |
| H10 |
N10 |
C2' |
N3' |
235.0 |
180.3 |
| C2' |
N10 |
H10 |
C9 |
135.7 |
179.9 |
| H10 |
N10 |
C9 |
O9 |
125.4 |
180.0 |
| H10 |
N10 |
C9 |
N8 |
304.4 |
360.0 |
| O9 |
C9 |
N10 |
H10 |
125.4 |
180.0 |
| N10 |
C9 |
O9 |
N8 |
178.8 |
180.0 |
| O9 |
C9 |
N8 |
S7 |
0.1 |
354.8 |
| O9 |
C9 |
N8 |
HN8 |
180.1 |
174.8 |
| N8 |
C9 |
N10 |
H10 |
304.4 |
360.0 |
| N10 |
C9 |
N8 |
O9 |
181.0 |
180.0 |
| S7 |
N8 |
C9 |
HN8 |
180.0 |
180.1 |
| C9 |
N8 |
S7 |
O7A |
277.7 |
177.4 |
| C9 |
N8 |
S7 |
O7B |
155.7 |
312.2 |
| C9 |
N8 |
S7 |
C2 |
60.5 |
64.8 |
| C9 |
N8 |
S7 |
HN8 |
180.0 |
179.9 |
| O7A |
S7 |
N8 |
O7B |
121.9 |
225.2 |
| O7A |
S7 |
N8 |
C2 |
217.1 |
112.6 |
| O7B |
S7 |
N8 |
C2 |
95.2 |
247.4 |
| N8 |
S7 |
C2 |
C3 |
214.7 |
244.0 |
| N8 |
S7 |
C2 |
C1 |
34.6 |
63.8 |
| C9 |
N8 |
HN8 |
S7 |
180.0 |
180.1 |
| HN8 |
N8 |
S7 |
O7A |
97.7 |
357.5 |
| HN8 |
N8 |
S7 |
O7B |
335.8 |
132.3 |
| HN8 |
N8 |
S7 |
C2 |
240.6 |
244.9 |
| O7A |
S7 |
N8 |
HN8 |
97.7 |
357.5 |
| N8 |
S7 |
O7A |
O7B |
255.9 |
123.1 |
| N8 |
S7 |
O7A |
C2 |
139.1 |
246.3 |
| O7B |
S7 |
O7A |
C2 |
243.3 |
123.1 |
| O7A |
S7 |
C2 |
C3 |
359.7 |
131.4 |
| O7A |
S7 |
C2 |
C1 |
179.6 |
311.2 |
| O7B |
S7 |
N8 |
HN8 |
335.8 |
132.3 |
| N8 |
S7 |
O7B |
O7A |
125.4 |
236.9 |
| N8 |
S7 |
O7B |
C2 |
253.0 |
113.8 |
| O7A |
S7 |
O7B |
C2 |
127.6 |
236.9 |
| O7B |
S7 |
C2 |
C3 |
128.1 |
356.6 |
| O7B |
S7 |
C2 |
C1 |
308.0 |
176.4 |
| C2 |
S7 |
N8 |
HN8 |
240.6 |
244.9 |
| N8 |
S7 |
C2 |
O7A |
215.0 |
112.6 |
| N8 |
S7 |
C2 |
O7B |
86.6 |
247.4 |
| O7A |
S7 |
C2 |
O7B |
231.6 |
134.8 |
| C3 |
C2 |
S7 |
C1 |
180.1 |
180.3 |
| S7 |
C2 |
C3 |
C4 |
179.9 |
180.0 |
| S7 |
C2 |
C3 |
H3 |
359.9 |
0.0 |
| S7 |
C2 |
C1 |
C6 |
180.2 |
179.7 |
| S7 |
C2 |
C1 |
CL11 |
0.1 |
0.2 |
| S7 |
C2 |
C3 |
C1 |
179.9 |
179.7 |
| C3 |
C2 |
C1 |
C6 |
0.2 |
359.4 |
| C3 |
C2 |
C1 |
CL11 |
180.1 |
179.9 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
359.9 |
360.0 |
| C2 |
C3 |
C4 |
H4 |
179.9 |
180.0 |
| S7 |
C2 |
C1 |
C3 |
180.1 |
180.3 |
| C1 |
C2 |
C3 |
C4 |
360.0 |
0.3 |
| C1 |
C2 |
C3 |
H3 |
180.0 |
180.3 |
| C5 |
C6 |
C1 |
C2 |
359.9 |
0.6 |
| C2 |
C1 |
C6 |
H6 |
179.8 |
180.3 |
| C6 |
C1 |
C2 |
CL11 |
180.1 |
179.5 |
| C4 |
C3 |
C2 |
C1 |
360.0 |
0.3 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.2 |
0.0 |
| C3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
| H3 |
C3 |
C2 |
C1 |
180.0 |
180.3 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
179.9 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
359.9 |
0.0 |
| C5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
360.0 |
359.7 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
359.9 |
0.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.1 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.1 |
359.9 |
| C2 |
C1 |
C6 |
C5 |
359.9 |
0.6 |
| C6 |
C5 |
C4 |
H4 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
| C5 |
C6 |
C1 |
CL11 |
179.9 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
0.1 |
359.9 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C1 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
360.0 |
0.0 |
| C2 |
C1 |
C6 |
CL11 |
179.9 |
180.5 |
| C1 |
C6 |
C5 |
H5 |
180.0 |
179.8 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.3 |
| H6 |
C6 |
C5 |
H5 |
360.0 |
0.0 |
| C5 |
C6 |
H6 |
C1 |
180.0 |
179.7 |
| H6 |
C6 |
C1 |
CL11 |
359.9 |
359.8 |
| C2 |
C1 |
CL11 |
C6 |
180.1 |
179.5 |
| CL11 |
C1 |
C6 |
H6 |
359.9 |
359.8 |