Atom Nomenclature for 1CS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1CS

Atom Name (V3) Atom Name (V2)
C5' C5'
O4' O4'
C4' C4'
N5' N5'
C6' C6'
C7' C7'
N1' N1'
C2' C2'
N10 N10
C9 C9
O9 O9
N8 N8
S7 S7
O7A O7A
O7B O7B
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C1 C1
N3' N3'
CL11 CL11
H5'1 1H5'
H5'2 2H5'
H5'3 3H5'
H7'1 1H7'
H7'2 2H7'
H7'3 3H7'
H10 H10
HN8 HN8
H3 H3
H4 H4
H5 H5
H6 H6