PDB Chemical Component 1CC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 1CC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O22 |
C21 |
1.265 |
1.215 |
| N4 |
C4 |
1.355 |
1.372 |
| C21 |
O23 |
1.267 |
1.349 |
| C21 |
C5 |
1.508 |
1.471 |
| OP1 |
P |
1.641 |
1.481 |
| C4 |
C5 |
1.388 |
1.467 |
| C4 |
N3 |
1.351 |
1.326 |
| C5 |
C6 |
1.394 |
1.384 |
| N3 |
C2 |
1.357 |
1.332 |
| OP2 |
P |
1.640 |
1.610 |
| C6 |
N1 |
1.342 |
1.349 |
| P |
O5' |
1.700 |
1.610 |
| C2 |
N1 |
1.403 |
1.343 |
| C2 |
O2 |
1.260 |
1.219 |
| N1 |
C1' |
1.463 |
1.464 |
| O5' |
C5' |
1.419 |
1.429 |
| C5' |
C4' |
1.524 |
1.531 |
| C2' |
C1' |
1.512 |
1.545 |
| C2' |
C3' |
1.517 |
1.545 |
| C1' |
O4' |
1.426 |
1.446 |
| C3' |
C4' |
1.504 |
1.545 |
| C3' |
O3' |
1.437 |
1.430 |
| O4' |
C4' |
1.424 |
1.444 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| C5' |
H5'' |
1.100 |
1.090 |
| C5' |
H5' |
1.101 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.091 |
| C2' |
H2'' |
1.100 |
1.090 |
| C2' |
H2' |
1.100 |
1.090 |
| C1' |
H1' |
1.100 |
1.090 |
| C6 |
H6 |
1.080 |
1.080 |
| N4 |
H42 |
1.000 |
0.970 |
| N4 |
H41 |
1.000 |
0.970 |
| O23 |
H5 |
0.950 |
0.967 |
| O3' |
HO3' |
0.950 |
0.967 |
| P |
OP3 |
|
1.610 |
| OP3 |
HOP3 |
|
0.967 |
Bond Angles for 1CC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O22 |
C21 |
O23 |
123.0 |
120.0 |
| N4 |
C4 |
N3 |
118.0 |
120.6 |
| C21 |
O23 |
H5 |
109.5 |
117.0 |
| OP1 |
P |
O5' |
118.2 |
109.4 |
| OP1 |
P |
OP3 |
|
109.5 |
| C4 |
N3 |
C2 |
121.5 |
120.8 |
| C5 |
C6 |
H6 |
119.5 |
120.5 |
| N3 |
C2 |
O2 |
121.4 |
118.9 |
| OP2 |
P |
O5' |
114.5 |
109.5 |
| OP2 |
P |
OP3 |
|
109.5 |
| P |
O5' |
C5' |
121.0 |
123.0 |
| O5' |
P |
OP3 |
|
109.5 |
| N1 |
C1' |
H1' |
107.7 |
110.5 |
| O5' |
C5' |
C4' |
108.8 |
109.4 |
| O5' |
C5' |
H5'' |
109.7 |
109.5 |
| O5' |
C5' |
H5' |
109.7 |
109.5 |
| C4' |
C5' |
H5'' |
109.6 |
109.4 |
| C4' |
C5' |
H5' |
109.6 |
109.5 |
| C5' |
C4' |
H4' |
110.3 |
110.3 |
| C2' |
C1' |
O4' |
108.4 |
104.9 |
| C1' |
C2' |
H2'' |
111.2 |
110.5 |
| C1' |
C2' |
H2' |
111.1 |
110.5 |
| C2' |
C1' |
H1' |
107.1 |
110.3 |
| C2' |
C3' |
O3' |
111.6 |
110.5 |
| C2' |
C3' |
H3' |
111.1 |
110.6 |
| O4' |
C1' |
H1' |
108.2 |
110.2 |
| C3' |
C4' |
H4' |
110.6 |
110.4 |
| O3' |
C3' |
H3' |
112.4 |
110.4 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| O4' |
C4' |
H4' |
111.8 |
110.4 |
| H5'' |
C5' |
H5' |
109.5 |
109.5 |
| H2'' |
C2' |
H2' |
109.5 |
110.6 |
| H42 |
N4 |
H41 |
120.0 |
120.0 |
| P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for 1CC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O22 |
C21 |
O23 |
H5 |
0.0 |
359.9 |
| N4 |
C4 |
N3 |
C2 |
179.8 |
179.6 |
| C21 |
C5 |
C6 |
H6 |
1.9 |
0.0 |
| OP2 |
P |
OP1 |
O5' |
221.0 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
|
120.0 |
| OP1 |
P |
O5' |
C5' |
292.4 |
305.0 |
| O5' |
P |
OP1 |
OP3 |
|
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
|
60.0 |
| C4 |
C5 |
C6 |
H6 |
180.8 |
180.0 |
| C4 |
N3 |
C2 |
O2 |
179.9 |
180.0 |
| OP1 |
P |
OP2 |
O5' |
140.6 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
|
240.0 |
| OP2 |
P |
O5' |
C5' |
71.2 |
65.0 |
| O5' |
P |
OP2 |
OP3 |
|
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
|
300.0 |
| C6 |
N1 |
C1' |
H1' |
169.3 |
352.7 |
| OP1 |
P |
O5' |
OP3 |
|
120.0 |
| OP2 |
P |
O5' |
OP3 |
|
240.0 |
| P |
O5' |
C5' |
C4' |
167.6 |
180.0 |
| P |
O5' |
C5' |
H5'' |
287.5 |
300.0 |
| P |
O5' |
C5' |
H5' |
47.7 |
60.0 |
| O5' |
P |
OP3 |
HOP3 |
|
180.0 |
| C2 |
N1 |
C1' |
H1' |
353.1 |
172.4 |
| N1 |
C1' |
C2' |
H2'' |
257.4 |
24.3 |
| N1 |
C1' |
C2' |
H2' |
19.5 |
261.5 |
| C2' |
C1' |
N1 |
H1' |
119.2 |
122.3 |
| O4' |
C1' |
N1 |
H1' |
242.1 |
237.8 |
| C5' |
O5' |
P |
OP3 |
|
185.0 |
| C4' |
C5' |
O5' |
H5'' |
240.1 |
240.1 |
| C4' |
C5' |
O5' |
H5' |
119.9 |
120.0 |
| O5' |
C5' |
C4' |
H4' |
70.1 |
305.6 |
| H5'' |
C5' |
O5' |
H5' |
239.8 |
239.9 |
| O5' |
C5' |
C4' |
H5'' |
119.9 |
120.0 |
| O5' |
C5' |
C4' |
H5' |
240.1 |
239.9 |
| C3' |
C4' |
C5' |
H4' |
238.6 |
237.8 |
| O4' |
C4' |
C5' |
H4' |
123.9 |
122.3 |
| H5'' |
C5' |
C4' |
H5' |
120.2 |
120.0 |
| N1 |
C1' |
C2' |
H1' |
240.5 |
237.6 |
| C1' |
C2' |
C3' |
O3' |
84.6 |
118.6 |
| C1' |
C2' |
C3' |
H3' |
210.9 |
241.3 |
| O4' |
C1' |
C2' |
H1' |
116.5 |
118.7 |
| H2'' |
C2' |
C1' |
H2' |
237.8 |
122.8 |
| C2' |
C3' |
C4' |
H4' |
156.7 |
95.0 |
| O3' |
C3' |
C2' |
H3' |
233.7 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
65.4 |
| N1 |
C1' |
O4' |
H1' |
117.6 |
122.3 |
| O4' |
C1' |
C2' |
H2'' |
133.4 |
265.3 |
| O4' |
C1' |
C2' |
H2' |
255.6 |
142.6 |
| C2' |
C1' |
O4' |
H1' |
244.2 |
241.2 |
| C1' |
O4' |
C4' |
H4' |
212.4 |
281.4 |
| C3' |
C4' |
C5' |
H5'' |
188.8 |
63.4 |
| C3' |
C4' |
C5' |
H5' |
68.6 |
303.5 |
| C5' |
C4' |
C3' |
H4' |
121.2 |
122.2 |
| O4' |
C4' |
C3' |
H4' |
239.2 |
241.0 |
| C2' |
C3' |
O3' |
H3' |
125.6 |
122.8 |
| O3' |
C3' |
C4' |
H4' |
39.0 |
336.4 |
| O4' |
C4' |
C5' |
H5'' |
74.0 |
308.0 |
| O4' |
C4' |
C5' |
H5' |
313.8 |
188.0 |
| C5' |
C4' |
O4' |
H4' |
237.0 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
120.0 |
118.9 |
| HOP2 |
OP2 |
P |
O5' |
219.4 |
60.1 |
| HOP2 |
OP2 |
P |
OP3 |
|
300.0 |
| O5' |
C5' |
H5'' |
C4' |
240.7 |
240.0 |
| O5' |
C5' |
H5'' |
H5' |
120.3 |
120.1 |
| C4' |
C5' |
H5'' |
H5' |
239.7 |
240.0 |
| H5'' |
C5' |
C4' |
H4' |
310.2 |
185.7 |
| O5' |
C5' |
H5' |
C4' |
119.3 |
120.0 |
| O5' |
C5' |
H5' |
H5'' |
239.7 |
239.9 |
| C4' |
C5' |
H5' |
H5'' |
120.3 |
119.9 |
| H5' |
C5' |
C4' |
H4' |
190.0 |
65.7 |
| H4' |
C4' |
C5' |
H5'' |
310.2 |
185.7 |
| H4' |
C4' |
C5' |
H5' |
190.0 |
65.7 |
| C2' |
C3' |
H3' |
O3' |
234.2 |
237.3 |
| H3' |
C3' |
C4' |
H4' |
275.7 |
213.8 |
| H3' |
C3' |
O3' |
HO3' |
54.4 |
302.6 |
| H2'' |
C2' |
C1' |
O4' |
133.4 |
265.3 |
| C1' |
C2' |
H2'' |
H2' |
123.2 |
237.3 |
| H2'' |
C2' |
C1' |
H1' |
16.9 |
146.6 |
| H2'' |
C2' |
C3' |
O3' |
325.7 |
237.2 |
| H2'' |
C2' |
C3' |
H3' |
91.9 |
359.9 |
| H2' |
C2' |
C1' |
O4' |
255.6 |
142.6 |
| C1' |
C2' |
H2' |
H2'' |
236.8 |
122.7 |
| H2' |
C2' |
C1' |
H1' |
139.1 |
23.9 |
| H2' |
C2' |
C3' |
O3' |
203.5 |
360.0 |
| H2' |
C2' |
C3' |
H3' |
329.7 |
122.6 |
| C2' |
C1' |
H1' |
O4' |
116.6 |
115.4 |
| H1' |
C1' |
C2' |
H2'' |
16.9 |
146.6 |
| H1' |
C1' |
C2' |
H2' |
139.1 |
23.9 |
| H42 |
N4 |
C4 |
N3 |
0.0 |
185.3 |
| H41 |
N4 |
C4 |
N3 |
180.0 |
5.4 |
| HO3' |
O3' |
C3' |
H3' |
54.4 |
302.6 |
| OP1 |
P |
OP3 |
O5' |
|
240.0 |
| OP2 |
P |
OP3 |
O5' |
|
120.0 |
| OP3 |
P |
O5' |
C5' |
|
185.0 |