data_1CC
# 
_chem_comp.id                                    1CC 
_chem_comp.name                                  
;5-carboxy-2'-deoxycytidine monophosphate
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-11-17 
_chem_comp.pdbx_modified_date                    2012-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1CC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3UO7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1CC P      P      P 0 1 N N N 33.005 55.703 -3.065 4.735  1.130  0.305  P      1CC 1  
1CC OP1    OP1    O 0 1 N N N 32.147 56.000 -4.432 5.879  0.231  0.030  OP1    1CC 2  
1CC OP2    OP2    O 0 1 N N N 34.621 55.561 -3.307 4.466  2.064  -0.978 OP2    1CC 3  
1CC "O5'"  "O5'"  O 0 1 N N N 32.576 56.540 -1.649 3.423  0.249  0.612  "O5'"  1CC 4  
1CC "C5'"  "C5'"  C 0 1 N N N 32.770 57.942 -1.541 2.928  -0.748 -0.284 "C5'"  1CC 5  
1CC "C4'"  "C4'"  C 0 1 N N R 32.022 58.447 -0.313 1.673  -1.391 0.312  "C4'"  1CC 6  
1CC "C3'"  "C3'"  C 0 1 N N S 30.603 57.952 -0.374 1.169  -2.532 -0.600 "C3'"  1CC 7  
1CC "C2'"  "C2'"  C 0 1 N N N 29.937 58.954 -1.298 -0.370 -2.427 -0.517 "C2'"  1CC 8  
1CC "C1'"  "C1'"  C 0 1 N N R 30.728 60.217 -1.043 -0.614 -1.235 0.435  "C1'"  1CC 9  
1CC "O4'"  "O4'"  O 0 1 N N N 31.922 59.867 -0.347 0.589  -0.438 0.348  "O4'"  1CC 10 
1CC N1     N1     N 0 1 N N N 31.046 60.996 -2.240 -1.774 -0.459 -0.007 N1     1CC 11 
1CC C6     C6     C 0 1 N N N 31.939 60.621 -3.169 -2.872 -0.406 0.775  C6     1CC 12 
1CC C5     C5     C 0 1 N N N 32.226 61.439 -4.261 -3.964 0.330  0.349  C5     1CC 13 
1CC C4     C4     C 0 1 N N N 31.585 62.665 -4.369 -3.867 1.020  -0.942 C4     1CC 14 
1CC N4     N4     N 0 1 N N N 31.810 63.513 -5.401 -4.916 1.766  -1.418 N4     1CC 15 
1CC N3     N3     N 0 1 N N N 30.700 63.041 -3.420 -2.746 0.909  -1.641 N3     1CC 16 
1CC C2     C2     C 0 1 N N N 30.417 62.245 -2.358 -1.723 0.192  -1.180 C2     1CC 17 
1CC O2     O2     O 0 1 N N N 29.592 62.599 -1.474 -0.709 0.114  -1.852 O2     1CC 18 
1CC C21    C21    C 0 1 N N N 33.204 60.963 -5.305 -5.184 0.418  1.166  C21    1CC 19 
1CC O22    O22    O 0 1 N N N 33.606 61.760 -6.202 -5.285 -0.242 2.181  O22    1CC 20 
1CC O23    O23    O 0 1 N N N 33.556 59.747 -5.255 -6.191 1.232  0.789  O23    1CC 21 
1CC "O3'"  "O3'"  O 0 1 N N N 30.070 58.025 0.958  1.612  -3.799 -0.108 "O3'"  1CC 22 
1CC HOP2   HOP2   H 0 0 N N N 34.815 55.676 -4.230 3.729  2.680  -0.869 HOP2   1CC 23 
1CC "H5''" "H5''" H 0 0 N N N 33.843 58.160 -1.436 2.680  -0.287 -1.240 "H5''" 1CC 24 
1CC "H5'"  "H5'"  H 0 1 N N N 32.381 58.440 -2.442 3.690  -1.512 -0.436 "H5'"  1CC 25 
1CC "H4'"  "H4'"  H 0 1 N N N 32.515 58.095 0.605  1.881  -1.769 1.313  "H4'"  1CC 26 
1CC "H3'"  "H3'"  H 0 1 N N N 30.552 56.935 -0.790 1.510  -2.381 -1.625 "H3'"  1CC 27 
1CC "H2''" "H2''" H 0 0 N N N 28.877 59.090 -1.038 -0.791 -2.222 -1.501 "H2''" 1CC 28 
1CC "H2'"  "H2'"  H 0 1 N N N 30.019 58.640 -2.349 -0.794 -3.341 -0.101 "H2'"  1CC 29 
1CC "H1'"  "H1'"  H 0 1 N N N 30.119 60.852 -0.383 -0.759 -1.589 1.456  "H1'"  1CC 30 
1CC H6     H6     H 0 1 N N N 32.443 59.671 -3.069 -2.899 -0.930 1.719  H6     1CC 31 
1CC H42    H42    H 0 1 N N N 31.327 64.388 -5.444 -5.701 1.905  -0.866 H42    1CC 32 
1CC H41    H41    H 0 1 N N N 32.459 63.264 -6.120 -4.873 2.154  -2.306 H41    1CC 33 
1CC H5     H5     H 0 1 N N N 34.145 59.557 -5.976 -6.973 1.256  1.357  H5     1CC 34 
1CC "HO3'" "HO3'" H 0 0 N N N 30.507 57.387 1.510  1.324  -4.551 -0.643 "HO3'" 1CC 35 
1CC OP3    OP3    O 0 1 N Y N ?      ?      ?      5.072  2.053  1.580  OP3    1CC 36 
1CC HOP3   HOP3   H 0 0 N N N ?      ?      ?      5.853  2.612  1.465  HOP3   1CC 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1CC O22   C21    DOUB N N 1  
1CC N4    C4     SING N N 2  
1CC C21   O23    SING N N 3  
1CC C21   C5     SING N N 4  
1CC OP1   P      DOUB N N 5  
1CC C4    C5     SING N N 6  
1CC C4    N3     DOUB N N 7  
1CC C5    C6     DOUB N N 8  
1CC N3    C2     SING N N 9  
1CC OP2   P      SING N N 10 
1CC C6    N1     SING N N 11 
1CC P     "O5'"  SING N N 12 
1CC C2    N1     SING N N 13 
1CC C2    O2     DOUB N N 14 
1CC N1    "C1'"  SING N N 15 
1CC "O5'" "C5'"  SING N N 16 
1CC "C5'" "C4'"  SING N N 17 
1CC "C2'" "C1'"  SING N N 18 
1CC "C2'" "C3'"  SING N N 19 
1CC "C1'" "O4'"  SING N N 20 
1CC "C3'" "C4'"  SING N N 21 
1CC "C3'" "O3'"  SING N N 22 
1CC "O4'" "C4'"  SING N N 23 
1CC OP2   HOP2   SING N N 24 
1CC "C5'" "H5''" SING N N 25 
1CC "C5'" "H5'"  SING N N 26 
1CC "C4'" "H4'"  SING N N 27 
1CC "C3'" "H3'"  SING N N 28 
1CC "C2'" "H2''" SING N N 29 
1CC "C2'" "H2'"  SING N N 30 
1CC "C1'" "H1'"  SING N N 31 
1CC C6    H6     SING N N 32 
1CC N4    H42    SING N N 33 
1CC N4    H41    SING N N 34 
1CC O23   H5     SING N N 35 
1CC "O3'" "HO3'" SING N N 36 
1CC P     OP3    SING N N 37 
1CC OP3   HOP3   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1CC SMILES           ACDLabs              12.01 "O=C(O)C=1C(=NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O)N"                                                                                                          
1CC InChI            InChI                1.03  "InChI=1S/C10H14N3O9P/c11-8-4(9(15)16)2-13(10(17)12-8)7-1-5(14)6(22-7)3-21-23(18,19)20/h2,5-7,14H,1,3H2,(H,15,16)(H2,11,12,17)(H2,18,19,20)/t5-,6+,7+/m0/s1" 
1CC InChIKey         InChI                1.03  WEUNVGZSKGOUOC-RRKCRQDMSA-N                                                                                                                                  
1CC SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1C(O)=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                                              
1CC SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1C(O)=O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                                  
1CC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)C(=O)O)COP(=O)(O)O)O"                                                                                                
1CC SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=C(C(=NC2=O)N)C(=O)O)COP(=O)(O)O)O"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1CC "SYSTEMATIC NAME" ACDLabs              12.01 
;5-carboxy-2'-deoxycytidine 5'-(dihydrogen phosphate)
;
1CC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-azanyl-2-oxidanylidene-1-[(2R,4S,5R)-4-oxidanyl-5-(phosphonooxymethyl)oxolan-2-yl]pyrimidine-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1CC "Create component"     2011-11-17 RCSB 
1CC "Modify internal type" 2011-11-17 RCSB 
1CC "Modify name"          2011-11-17 RCSB 
1CC "Modify atom id"       2020-06-18 RCSB 
# 
