PDB Chemical Component 1C2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1C2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O6 S1 1.470 1.421
O6 HO6 0.950  
S1 O4 1.462 1.522
S1 O5 1.482 1.421
S1 N3 1.625 1.656
N3 C15 1.370 1.397
N3 HN3 1.020 0.971
C15 C16 1.398 1.389
C15 C14 1.400 1.386
C16 C1 1.404 1.377
C16 H16 1.103 1.080
C14 C13 1.400 1.387
C14 H14 1.103 1.080
C13 C12 1.516 1.509
C13 C2 1.379 1.378
C12 N2 1.477 1.467
C12 H121 1.114 1.089
C12 H122 1.115 1.090
N2 C7 1.330 1.348
N2 C4 1.458 1.472
C7 O3 1.223 1.215
C7 O2 1.440 1.346
O2 C8 1.435 1.452
C8 C11 1.527 1.531
C8 C10 1.524 1.530
C8 C9 1.519 1.529
C11 H111 1.115 1.090
C11 H112 1.115 1.089
C11 H113 1.115 1.090
C10 H101 1.115 1.090
C10 H102 1.115 1.090
C10 H103 1.115 1.090
C9 H91 1.115 1.090
C9 H92 1.115 1.090
C9 H93 1.115 1.090
C4 C5 1.502 1.507
C4 C3 1.532 1.528
C4 H4 1.115 1.090
C5 O1 1.217 1.213
C5 N1 1.328 1.348
N1 C6 1.459 1.465
N1 HN1 1.020 0.970
C6 H61 1.115 1.090
C6 H62 1.115 1.090
C6 H63 1.115 1.089
C3 C2 1.509 1.506
C3 H31 1.114 1.090
C3 H32 1.115 1.090
C2 C1 1.396 1.391
C1 H1 1.104 1.081

Bond Angles for 1C2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
S1 O6 HO6 110.1  
O6 S1 O4 110.1 105.7
O6 S1 O5 114.0 125.4
O6 S1 N3 105.1 105.8
O4 S1 O5 115.3 105.8
O4 S1 N3 107.7 107.4
O5 S1 N3 103.8 105.8
S1 N3 C15 121.8 120.1
S1 N3 HN3 107.8 120.0
C15 N3 HN3 107.8 120.0
N3 C15 C16 120.2 120.2
N3 C15 C14 121.0 120.3
C16 C15 C14 118.8 119.6
C15 C16 C1 119.6 119.7
C15 C16 H16 120.0 120.2
C15 C14 C13 122.0 120.5
C15 C14 H14 119.0 119.8
C1 C16 H16 120.4 120.1
C16 C1 C2 120.2 120.7
C16 C1 H1 120.2 119.7
C13 C14 H14 119.0 119.7
C14 C13 C12 121.2 117.8
C14 C13 C2 118.2 119.9
C12 C13 C2 120.5 122.3
C13 C12 N2 113.7 109.7
C13 C12 H121 110.7 109.4
C13 C12 H122 110.6 109.5
C13 C2 C3 118.5 122.8
C13 C2 C1 121.2 119.6
N2 C12 H121 110.7 109.4
N2 C12 H122 110.7 109.3
C12 N2 C7 120.0 121.3
C12 N2 C4 120.8 117.4
H121 C12 H122 99.6 109.5
C7 N2 C4 119.2 121.3
N2 C7 O3 126.7 120.0
N2 C7 O2 112.4 120.0
N2 C4 C5 111.6 109.8
N2 C4 C3 108.4 107.9
N2 C4 H4 110.9 109.7
O3 C7 O2 120.9 120.0
C7 O2 C8 129.3 120.0
O2 C8 C11 106.7 109.5
O2 C8 C10 110.3 109.5
O2 C8 C9 107.7 109.5
C11 C8 C10 110.8 109.4
C11 C8 C9 108.3 109.5
C8 C11 H111 113.2 109.5
C8 C11 H112 106.8 109.4
C8 C11 H113 113.2 109.4
C10 C8 C9 112.8 109.5
C8 C10 H101 111.9 109.5
C8 C10 H102 110.3 109.5
C8 C10 H103 111.9 109.5
C8 C9 H91 112.9 109.5
C8 C9 H92 107.7 109.5
C8 C9 H93 112.9 109.5
H111 C11 H112 113.2 109.5
H111 C11 H113 97.2 109.5
H112 C11 H113 113.3 109.6
H101 C10 H102 111.9 109.5
H101 C10 H103 98.5 109.4
H102 C10 H103 111.9 109.4
H91 C9 H92 112.9 109.4
H91 C9 H93 97.5 109.5
H92 C9 H93 112.9 109.5
C5 C4 C3 115.1 109.8
C5 C4 H4 103.6 109.8
C4 C5 O1 120.9 120.0
C4 C5 N1 117.6 120.0
C3 C4 H4 107.1 109.8
C4 C3 C2 109.1 110.9
C4 C3 H31 112.3 109.2
C4 C3 H32 112.3 109.2
O1 C5 N1 121.4 120.0
C5 N1 C6 120.4 120.0
C5 N1 HN1 115.1 120.0
C6 N1 HN1 124.5 120.0
N1 C6 H61 108.3 109.5
N1 C6 H62 120.4 109.4
N1 C6 H63 108.3 109.5
H61 C6 H62 108.3 109.5
H61 C6 H63 101.7 109.5
H62 C6 H63 108.3 109.5
C2 C3 H31 112.4 109.2
C2 C3 H32 112.4 109.2
C3 C2 C1 120.4 117.6
H31 C3 H32 98.1 109.1
C2 C1 H1 119.6 119.6

Torsion Angles for 1C2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O4 S1 O6 O5 228.7 123.1
O4 S1 O6 N3 115.7 246.3
O5 S1 O6 N3 247.1 123.2
O6 S1 N3 C15 52.8 312.4
O6 S1 N3 HN3 287.5 132.5
HO6 O6 S1 O4 180.0  
HO6 O6 S1 O5 311.3  
HO6 O6 S1 N3 64.3  
O4 S1 O6 HO6 180.0  
O6 S1 O4 O5 130.6 225.2
O6 S1 O4 N3 246.0 112.6
O5 S1 O4 N3 115.3 247.4
O4 S1 N3 C15 295.4 65.0
O4 S1 N3 HN3 170.2 245.0
O5 S1 O6 HO6 311.3  
O6 S1 O5 O4 231.3 123.1
O6 S1 O5 N3 113.7 236.8
O4 S1 O5 N3 242.4 113.7
O5 S1 N3 C15 172.7 177.6
O5 S1 N3 HN3 47.5 357.6
N3 S1 O6 HO6 64.3  
O6 S1 N3 O4 117.3 247.4
O6 S1 N3 O5 240.1 134.8
O4 S1 N3 O5 122.7 247.4
C15 N3 S1 HN3 125.3 180.0
S1 N3 C15 C16 89.8 44.9
S1 N3 C15 C14 267.5 225.1
S1 N3 C15 HN3 234.7 180.0
C16 C15 N3 C14 182.3 179.9
N3 C15 C16 C1 179.0 179.8
N3 C15 C16 H16 359.0 359.9
N3 C15 C14 C13 181.4 180.0
N3 C15 C14 H14 1.4 359.8
S1 N3 HN3 C15 133.2 180.0
HN3 N3 C15 C16 215.1 224.9
HN3 N3 C15 C14 32.7 45.0
C16 C15 N3 HN3 215.1 224.9
N3 C15 C16 C14 177.7 180.1
C16 C15 C14 C13 359.1 0.1
C16 C15 C14 H14 179.1 179.9
C1 C16 C15 H16 180.0 179.9
C15 C16 C1 C2 359.0 0.1
C15 C16 C1 H1 179.1 180.1
C14 C15 N3 HN3 32.7 45.0
N3 C15 C14 C16 182.3 179.9
C14 C15 C16 C1 1.3 359.7
C14 C15 C16 H16 181.3 179.8
C13 C14 C15 H14 180.0 180.1
C15 C14 C13 C12 180.2 181.1
C15 C14 C13 C2 0.1 0.4
C1 C16 C15 C14 1.3 359.7
C15 C16 C1 H16 180.0 180.1
C13 C2 C1 C16 0.2 0.4
C3 C2 C1 C16 180.5 180.4
C2 C1 C16 H1 180.0 180.0
H16 C16 C15 C14 181.3 179.8
C15 C16 H16 C1 180.0 179.9
H16 C16 C1 C2 179.1 180.0
H16 C16 C1 H1 359.1 0.0
C15 C14 C13 H14 180.0 179.9
C12 C13 C14 C2 180.1 180.7
C14 C13 C12 N2 201.7 190.8
C14 C13 C12 H121 76.4 310.8
C14 C13 C12 H122 327.0 70.8
C14 C13 C2 C3 179.9 179.3
C14 C13 C2 C1 0.2 359.4
C15 C14 H14 C13 180.0 180.1
H14 C14 C13 C12 0.2 1.3
H14 C14 C13 C2 180.1 180.5
C12 C13 C14 H14 0.2 1.3
C14 C13 C12 C2 179.9 179.3
C12 C13 C2 C3 359.8 358.6
C12 C13 C2 C1 180.2 178.6
N2 C12 C13 H121 125.3 239.9
N2 C12 C13 H122 234.7 120.0
C13 C12 N2 C7 181.7 135.6
C13 C12 N2 C4 1.1 315.7
H121 C12 C13 H122 109.5 240.0
C16 C1 C2 C13 0.2 0.4
C2 C13 C14 H14 180.1 180.5
C14 C13 C2 C12 180.1 180.8
C2 C13 C12 N2 21.8 11.5
C2 C13 C12 H121 256.5 131.6
C2 C13 C12 H122 147.0 251.5
C4 C3 C2 C13 318.6 20.2
C13 C2 C3 H31 83.9 259.8
C13 C2 C3 H32 193.4 140.6
C3 C2 C13 C1 179.6 179.9
C13 C2 C1 H1 180.1 180.4
N2 C12 C13 C2 21.8 11.5
C13 C12 N2 H121 234.7 120.1
C13 C12 N2 H122 125.2 240.0
H121 C12 N2 H122 250.5 119.9
C7 N2 C12 C4 180.6 179.9
C12 N2 C7 O3 179.8 186.1
C12 N2 C7 O2 359.6 6.1
C12 N2 C4 C5 86.4 183.8
C12 N2 C4 C3 318.7 64.1
C12 N2 C4 H4 201.3 304.5
H121 C12 C13 C2 256.5 131.6
C13 C12 H121 N2 127.0 239.8
C13 C12 H121 H122 243.5 119.9
N2 C12 H121 H122 116.5 240.2
H121 C12 N2 C7 307.0 15.5
H121 C12 N2 C4 126.4 195.6
H122 C12 C13 C2 147.0 251.5
C13 C12 H122 N2 233.1 120.2
C13 C12 H122 H121 116.5 240.1
N2 C12 H122 H121 243.5 119.9
H122 C12 N2 C7 56.5 255.6
H122 C12 N2 C4 235.9 75.7
C7 N2 C12 H121 307.0 15.5
C7 N2 C12 H122 56.5 255.6
C12 N2 C7 C4 179.4 180.1
C7 N2 C4 C5 265.8 3.9
C7 N2 C4 C3 138.1 244.2
C7 N2 C4 H4 20.8 124.6
O3 C7 N2 O2 180.1 180.0
N2 C7 O2 C8 186.8 179.9
C4 N2 C12 H121 126.4 195.6
C4 N2 C12 H122 235.9 75.7
C12 N2 C4 C7 180.6 179.9
C4 N2 C7 O3 0.3 6.0
C4 N2 C7 O2 180.2 186.0
C5 C4 N2 C3 127.7 119.7
C5 C4 N2 H4 245.1 239.3
N2 C4 C5 O1 187.5 266.3
N2 C4 C5 N1 7.7 86.3
C3 C4 N2 H4 117.4 119.6
N2 C4 C3 C2 60.1 312.5
N2 C4 C3 H31 294.8 72.9
N2 C4 C3 H32 185.3 192.1
O3 C7 N2 C4 0.3 6.0
N2 C7 O3 O2 179.8 180.0
O3 C7 O2 C8 6.6 360.0
O2 C7 N2 C4 180.2 186.0
N2 C7 O2 O3 180.1 180.0
C7 O2 C8 C11 190.5 60.0
C7 O2 C8 C10 70.0 180.0
C7 O2 C8 C9 306.6 300.0
C11 C8 O2 C10 120.5 240.0
C11 C8 O2 C9 243.9 120.0
O2 C8 C11 H111 54.7 59.9
O2 C8 C11 H112 180.0 180.0
O2 C8 C11 H113 305.3 300.0
C10 C8 O2 C9 123.4 240.0
O2 C8 C10 H101 54.7 60.0
O2 C8 C10 H102 180.0 180.0
O2 C8 C10 H103 305.2 300.0
O2 C8 C9 H91 54.7 60.0
O2 C8 C9 H92 180.0 180.0
O2 C8 C9 H93 305.3 300.0
O2 C8 C11 C10 239.9 120.0
O2 C8 C11 C9 115.7 240.0
C10 C8 C11 C9 235.8 120.0
C11 C8 C10 H101 296.8 180.0
C11 C8 C10 H102 62.0 300.0
C11 C8 C10 H103 187.3 60.0
C11 C8 C9 H91 169.8 300.0
C11 C8 C9 H92 295.1 59.9
C11 C8 C9 H93 60.4 180.0
H111 C11 C8 H112 234.7 240.0
H111 C11 C8 H113 109.4 119.9
H112 C11 C8 H113 234.7 240.0
O2 C8 C10 C11 118.0 240.0
O2 C8 C10 C9 239.6 120.0
C11 C8 C10 C9 121.6 240.0
C10 C8 C11 H111 174.8 300.0
C10 C8 C11 H112 300.1 60.0
C10 C8 C11 H113 65.4 180.0
C10 C8 C9 H91 292.8 180.0
C10 C8 C9 H92 58.1 300.0
C10 C8 C9 H93 183.4 60.0
H101 C10 C8 H102 234.7 240.0
H101 C10 C8 H103 109.5 120.0
H102 C10 C8 H103 234.8 240.0
O2 C8 C9 C11 244.9 120.0
O2 C8 C9 C10 121.9 240.0
C11 C8 C9 C10 237.0 120.0
C9 C8 C11 H111 299.0 180.0
C9 C8 C11 H112 64.3 300.0
C9 C8 C11 H113 189.6 60.0
C9 C8 C10 H101 175.2 300.0
C9 C8 C10 H102 300.4 60.0
C9 C8 C10 H103 65.7 180.0
H91 C9 C8 H92 234.7 240.1
H91 C9 C8 H93 109.4 120.0
H92 C9 C8 H93 234.7 239.9
H111 C11 C8 C10 174.8 300.0
H111 C11 C8 C9 299.0 180.0
C8 C11 H111 H112 121.7 120.0
C8 C11 H111 H113 240.9 240.1
H112 C11 H111 H113 119.2 120.1
H112 C11 C8 C10 300.1 60.0
H112 C11 C8 C9 64.3 300.0
C8 C11 H112 H111 234.7 240.0
C8 C11 H112 H113 125.3 119.9
H111 C11 H112 H113 250.6 239.9
H113 C11 C8 C10 65.4 180.0
H113 C11 C8 C9 189.6 60.0
C8 C11 H113 H111 119.1 119.9
C8 C11 H113 H112 238.3 240.0
H111 C11 H113 H112 119.1 120.1
H101 C10 C8 C9 175.2 300.0
C8 C10 H101 H102 124.3 120.0
C8 C10 H101 H103 242.2 240.0
H102 C10 H101 H103 117.8 119.9
H102 C10 C8 C9 300.4 60.0
C8 C10 H102 H101 234.8 240.0
C8 C10 H102 H103 125.3 120.0
H101 C10 H102 H103 250.5 240.1
H103 C10 C8 C9 65.7 180.0
C8 C10 H103 H101 117.8 120.0
C8 C10 H103 H102 235.7 240.0
H101 C10 H103 H102 117.8 120.0
C8 C9 H91 H92 122.5 120.0
C8 C9 H91 H93 241.2 240.0
H92 C9 H91 H93 118.8 120.0
C8 C9 H92 H91 234.7 240.0
C8 C9 H92 H93 125.3 120.0
H91 C9 H92 H93 250.6 240.0
C8 C9 H93 H91 118.8 120.0
C8 C9 H93 H92 237.6 239.9
H91 C9 H93 H92 118.8 119.9
N2 C4 C5 C3 236.0 241.5
N2 C4 C5 H4 119.4 120.7
C3 C4 C5 H4 243.4 239.2
C5 C4 C3 C2 294.3 192.9
C5 C4 C3 H31 169.1 313.3
C5 C4 C3 H32 59.6 72.5
O1 C5 C4 N1 179.7 180.0
C4 C5 N1 C6 179.9 180.0
C4 C5 N1 HN1 359.9 360.0
C13 C2 C3 C4 318.6 20.2
N2 C4 C3 C5 125.7 119.7
N2 C4 C3 H4 240.2 240.4
C5 C4 C3 H4 114.5 120.8
C3 C4 C5 O1 311.5 24.8
C3 C4 C5 N1 131.8 204.8
C2 C3 C4 H31 125.3 239.6
C2 C3 C4 H32 234.7 120.4
C4 C3 C2 C1 138.3 200.1
H31 C3 C4 H32 109.5 240.8
N2 C4 H4 C5 240.1 239.3
N2 C4 H4 C3 118.1 118.5
C5 C4 H4 C3 238.0 239.2
H4 C4 C5 O1 68.1 145.6
H4 C4 C5 N1 248.3 325.6
H4 C4 C3 C2 179.8 72.1
H4 C4 C3 H31 54.6 192.5
H4 C4 C3 H32 305.1 311.7
O1 C5 C4 C3 311.5 24.8
O1 C5 C4 H4 68.1 145.6
C4 C5 O1 N1 180.3 180.0
O1 C5 N1 C6 0.2 0.0
O1 C5 N1 HN1 180.2 180.0
N1 C5 C4 C3 131.8 204.8
N1 C5 C4 H4 248.3 325.6
C4 C5 N1 O1 179.7 180.0
C6 N1 C5 HN1 180.0 180.0
C5 N1 C6 H61 54.7 60.0
C5 N1 C6 H62 180.0 180.0
C5 N1 C6 H63 305.3 300.0
C5 N1 C6 HN1 180.0 180.0
H61 C6 N1 H62 234.7 240.1
H61 C6 N1 H63 109.5 120.1
H62 C6 N1 H63 234.7 240.0
C5 N1 HN1 C6 180.0 180.0
HN1 N1 C6 H61 234.8 240.1
HN1 N1 C6 H62 0.0 0.0
HN1 N1 C6 H63 125.3 120.0
H61 C6 N1 HN1 234.8 240.1
N1 C6 H61 H62 132.1 119.9
N1 C6 H61 H63 246.1 239.9
H62 C6 H61 H63 113.9 120.0
H62 C6 N1 HN1 0.0 0.0
N1 C6 H62 H61 234.7 240.0
N1 C6 H62 H63 125.3 120.0
H61 C6 H62 H63 250.5 240.0
H63 C6 N1 HN1 125.3 120.0
N1 C6 H63 H61 113.9 120.0
N1 C6 H63 H62 227.9 240.0
H61 C6 H63 H62 113.9 120.0
C16 C1 C2 C3 180.5 180.4
C13 C2 C3 C1 180.4 180.1
C2 C3 C4 H4 179.8 72.1
C4 C3 C2 H31 234.7 120.4
C4 C3 C2 H32 125.2 239.6
H31 C3 C2 H32 250.5 119.2
C3 C2 C1 H1 0.5 0.4
H31 C3 C4 H4 54.6 192.5
C4 C3 H31 C2 123.4 238.6
C4 C3 H31 H32 241.7 119.3
C2 C3 H31 H32 118.3 240.7
H31 C3 C2 C1 263.5 79.7
H32 C3 C4 H4 305.1 311.7
C4 C3 H32 C2 236.6 121.4
C4 C3 H32 H31 118.3 240.7
C2 C3 H32 H31 241.7 119.3
H32 C3 C2 C1 13.0 320.5
C2 C1 C16 H16 179.1 180.0
C16 C1 C2 H1 180.0 180.0
C13 C2 C1 C3 179.6 179.9
C1 C2 C3 H31 263.5 79.7
C1 C2 C3 H32 13.0 320.5
H1 C1 C16 H16 359.1 0.0
C16 C1 H1 C2 180.0 180.0