Atom Nomenclature for 1C2

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1C2

Atom Name (V3) Atom Name (V2)
O6 O6
S1 S1
O4 O4
O5 O5
N3 N3
C15 C15
C16 C16
C14 C14
C13 C13
C12 C12
N2 N2
C7 C7
O3 O3
O2 O2
C8 C8
C11 C11
C10 C10
C9 C9
C4 C4
C5 C5
O1 O1
N1 N1
C6 C6
C3 C3
C2 C2
C1 C1
HO6 HO6
HN3 HN3
H16 H16
H14 H14
H121 1H12
H122 2H12
H111 1H11
H112 2H11
H113 3H11
H101 1H10
H102 2H10
H103 3H10
H91 1H9
H92 2H9
H93 3H9
H4 H4
HN1 HN1
H61 1H6
H62 2H6
H63 3H6
H31 1H3
H32 2H3
H1 H1