Atom Nomenclature for 1BU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1BU

Atom Name (V3) Atom Name (V2)
C4 C4
C5 C5
C6 C6
N1 N1
N3 N3
CAA CAA
CBA CBA
CAQ CAQ
CAI CAI
CAG CAG
CAJ CAJ
CBE CBE
NBK NBK
NAV NAV
CBF CBF
CBL CBL
CAC CAC
CAD CAD
CAB CAB
CAR CAR
CBG CBG
NAX NAX
CAZ CAZ
OAF OAF
NAW NAW
CBC CBC
CAL CAL
CAN CAN
CAK CAK
CAM CAM
CBD CBD
NAY NAY
CAS CAS
CBB CBB
NAE NAE
CAO CAO
CAP CAP
C2 C2
HAA HAA
HAAA HAAA
HAAB HAAB
HAQ HAQ
HAI HAI
HAG HAG
HAJ HAJ
HAC HAC
HACA HACA
HACB HACB
HAD HAD
HADA HADA
HADB HADB
HAB HAB
HABA HABA
HABB HABB
HAR HAR
HNAX HNAX
HNAW HNAW
HAL HAL
HAN HAN
HAK HAK
HAM HAM
HNAY HNAY
HAS HAS
HNAE HNAE
HNAA HNAA
HAO HAO
HAP HAP
H2 H2