Atom Nomenclature for 1BG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1BG

Atom Name (V3) Atom Name (V2)
N2 N2
C1 C1
C3 C3
C5 C5
C6 C6
O7 O7
N8 N8
C9 C9
C17 C17
O18 O18
C11 C11
C16 C16
C15 C15
C14 C14
C13 C13
C12 C12
N19 N19
C20 C20
C21 C21
C23 C23
C24 C24
C25 C25
N26 N26
C27 C27
C28 C28
C30 C30
O31 O31
N32 N32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C42 C42
H4 H4
H1 H1
H2 H2
H3 H3
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H21 H21
H22 H22
H19 H19
H20 H20
H17 H17
H18 H18
H15 H15
H16 H16
H13 H13
H14 H14
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47