Atom Nomenclature for 1B0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1B0

Atom Name (V3) Atom Name (V2)
O24 O24
C23 C23
N4 N4
C5 C5
C13 C13
N15 N15
C17 C17
C22 C22
C21 C21
C20 C20
C19 C19
C18 C18
C16 C16
O14 O14
C6 C6
C7 C7
C12 C12
C11 C11
C10 C10
C9 C9
C8 C8
C25 C25
C1 C1
C26 C26
C31 C31
C30 C30
C29 C29
C28 C28
C27 C27
N3 N3
C2 C2
C32 C32
H4 H4
H251 H251
H252 H252
H5 H5
H61C H61C
H62C H62C
H161 H161
H162 H162
H163 H163
H22 H22
H18 H18
H21 H21
H20 H20
H19 H19
H12 H12
H8 H8
H11 H11
H10 H10
H9 H9
H31 H31
H30 H30
H29 H29
H28 H28
H3 H3
H321 H321
H322 H322
H323 H323