Atom Nomenclature for 1AU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1AU

Atom Name (V3) Atom Name (V2)
CBB CBB
CAO CAO
CAG CAG
CAF CAF
CAM CAM
CBA CBA
CAN CAN
CAI CAI
CAL CAL
CAX CAX
NAS NAS
CAU CAU
OAE OAE
NAT NAT
CAZ CAZ
CAQ CAQ
CAY CAY
CBD CBD
CAB CAB
CAC CAC
CAA CAA
NAR NAR
NBC NBC
CAW CAW
CAP CAP
CAK CAK
CAH CAH
CAJ CAJ
CAV CAV
NAD NAD
HAO HAO
HAG HAG
HAF HAF
HAM HAM
HAN HAN
HAI HAI
HAL HAL
HNAS HNAS
HNAT HNAT
HAQ HAQ
HAB HAB
HABA HABA
HABB HABB
HAC HAC
HACA HACA
HACB HACB
HAA HAA
HAAA HAAA
HAAB HAAB
HAP HAP
HAK HAK
HAH HAH
HAJ HAJ
HNAD HNAD
HNAA HNAA