PDB Chemical Component 1AP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 1AP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.385 1.326
N1 C6 1.351 1.328
C2 N2 1.341 1.385
C2 N3 1.340 1.324
C4 C5 1.361 1.405
C4 N3 1.348 1.328
C4 N9 1.375 1.371
C5 C6 1.404 1.405
C5 N7 1.387 1.356
C6 N6 1.334 1.383
C8 N9 1.378 1.364
C8 N7 1.303 1.301
C8 H81 1.103 1.080
N2 HN21 1.019 0.970
N2 HN22 1.020 0.970
N9 C1' 1.460 1.464
N6 HN61 1.020 0.971
N6 HN62 1.021 0.970
P OP1 1.481 1.610
P OP2 1.488 1.478
P O5' 1.597 1.610
P OP3 1.617 1.609
OP1 H1P 0.950 0.967
O5' C5' 1.420 1.428
C5' C4' 1.523 1.529
C5' H52 1.114 1.089
C5' H51 1.115 1.090
C4' O4' 1.447 1.446
C4' C3' 1.534 1.550
C4' H4 1.115 1.090
O4' C1' 1.412 1.436
C1' C2' 1.516 1.541
C1' H11 1.114 1.089
C2' C3' 1.514 1.547
C2' H21 1.115 1.090
C2' H22 1.115 1.090
C3' O3' 1.430 1.429
C3' H31 1.114 1.091
O3' HO31 0.950 0.967
OP3 H3P 0.951 0.966

Bond Angles for 1AP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 120.0 121.1
N1 C2 N2 115.3 118.8
N1 C2 N3 125.3 122.2
N1 C6 C5 117.4 118.6
N1 C6 N6 118.9 120.7
N2 C2 N3 119.4 118.9
C2 N2 HN21 115.4 120.0
C2 N2 HN22 110.0 120.0
C2 N3 C4 112.3 120.7
C5 C4 N3 127.5 119.1
C5 C4 N9 105.3 106.1
C4 C5 C6 117.5 118.3
C4 C5 N7 111.6 107.1
N3 C4 N9 127.3 134.8
C4 N9 C8 106.3 107.4
C4 N9 C1' 126.6 126.3
C6 C5 N7 130.9 134.6
C5 C6 N6 123.7 120.7
C5 N7 C8 103.9 109.4
C6 N6 HN61 118.9 120.0
C6 N6 HN62 108.8 120.0
N9 C8 N7 112.9 110.0
N9 C8 H81 126.0 125.0
C8 N9 C1' 127.1 126.2
N7 C8 H81 121.1 125.0
HN21 N2 HN22 110.2 120.0
N9 C1' O4' 108.1 109.9
N9 C1' C2' 114.8 109.9
N9 C1' H11 105.4 109.9
HN61 N6 HN62 108.7 120.0
OP1 P OP2 119.2 109.4
OP1 P O5' 110.4 109.5
OP1 P OP3 104.5 109.4
P OP1 H1P 119.2 106.8
OP2 P O5' 107.8 109.5
OP2 P OP3 109.0 109.5
O5' P OP3 105.0 109.5
P O5' C5' 121.8 106.8
P OP3 H3P 104.5 106.8
O5' C5' C4' 111.0 109.5
O5' C5' H52 111.7 109.5
O5' C5' H51 111.7 109.4
C4' C5' H52 111.6 109.4
C4' C5' H51 111.6 109.5
C5' C4' O4' 110.0 110.8
C5' C4' C3' 115.2 110.7
C5' C4' H4 104.1 110.5
H52 C5' H51 98.7 109.4
O4' C4' C3' 105.9 103.5
O4' C4' H4 113.6 110.5
C4' O4' C1' 109.3 106.9
C3' C4' H4 108.2 110.6
C4' C3' C2' 102.6 102.1
C4' C3' O3' 108.9 110.9
C4' C3' H31 113.8 110.9
O4' C1' C2' 104.7 107.4
O4' C1' H11 115.3 109.9
C2' C1' H11 108.8 109.8
C1' C2' C3' 101.3 104.2
C1' C2' H21 115.3 110.5
C1' C2' H22 115.3 110.4
C3' C2' H21 115.4 110.5
C3' C2' H22 115.4 110.5
C2' C3' O3' 108.2 110.9
C2' C3' H31 114.3 110.9
H21 C2' H22 95.0 110.5
O3' C3' H31 108.7 110.8
C3' O3' HO31 108.8 106.8

Torsion Angles for 1AP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 0.2 0.2
C2 N1 C6 N6 180.3 180.1
N2 C2 N1 N3 180.2 179.8
N1 C2 N2 HN21 180.0 359.9
N1 C2 N2 HN22 54.7 179.6
N1 C2 N3 C4 0.2 359.5
C6 N1 C2 N2 179.8 179.9
C6 N1 C2 N3 359.7 0.1
C4 C5 C6 N1 0.1 359.9
N1 C6 C5 N7 179.7 179.9
C5 C6 N1 N6 179.8 180.1
N1 C6 N6 HN61 180.0 0.1
N1 C6 N6 HN62 54.8 180.1
N2 C2 N1 C6 179.8 179.9
N1 C2 N2 N3 179.8 180.2
N2 C2 N3 C4 180.0 179.7
HN21 N2 C2 HN22 125.4 180.3
N3 C2 N1 C6 359.7 0.1
N1 C2 N3 N2 180.2 179.8
N3 C2 N2 HN21 0.2 179.7
N3 C2 N2 HN22 234.8 359.4
C5 C4 N3 C2 0.1 0.6
C2 N3 C4 N9 179.9 180.2
N1 C6 C5 C4 0.1 359.9
C2 N3 C4 C5 0.1 0.6
N3 C4 C5 N9 179.8 179.7
C5 C4 N9 C8 359.9 360.0
C5 C4 N9 C1' 180.1 179.9
C6 C5 C4 N7 179.7 180.0
C4 C5 C6 N6 179.9 180.0
C4 C5 N7 C8 359.8 360.0
C5 C4 N3 N9 180.2 180.5
N3 C4 C5 C6 359.7 359.7
N3 C4 C5 N7 180.0 179.7
N3 C4 N9 C8 180.1 180.4
N3 C4 N9 C1' 0.3 0.4
C5 C4 N9 N3 179.8 179.6
N9 C4 C5 C6 179.9 180.0
N9 C4 C5 N7 0.2 0.1
C4 N9 C8 N7 360.0 0.0
C4 N9 C8 H81 180.0 180.1
C8 N9 C4 C1' 179.8 180.0
C4 N9 C1' O4' 264.4 208.2
C4 N9 C1' C2' 147.9 90.3
C4 N9 C1' H11 28.2 329.3
N1 C6 C5 N6 180.2 179.9
C6 C5 C4 N3 359.7 359.7
C6 C5 C4 N9 179.9 180.0
C4 C5 C6 N7 180.4 180.0
C6 C5 N7 C8 180.1 180.0
C5 C6 N6 HN61 0.2 180.0
C5 C6 N6 HN62 235.0 0.1
N7 C5 C4 N3 180.0 179.7
N7 C5 C4 N9 0.2 0.1
C4 C5 N7 C6 179.6 180.0
N7 C5 C6 N6 359.5 360.0
N9 C8 N7 C5 0.2 0.0
C5 N7 C8 H81 180.1 180.0
N1 C6 N6 C5 179.8 180.1
N6 C6 C5 N7 359.5 360.0
HN61 N6 C6 HN62 125.2 180.0
C4 N9 C8 C1' 180.2 180.0
C5 N7 C8 N9 0.2 0.0
N7 C8 N9 H81 180.0 180.0
C8 N9 C1' O4' 84.7 28.2
C8 N9 C1' C2' 328.2 270.3
C8 N9 C1' H11 208.5 149.3
N9 C8 N7 H81 180.0 180.0
N7 C8 N9 C1' 179.7 180.0
N9 C8 H81 N7 180.0 180.0
H81 C8 N9 C1' 359.8 0.1
HN21 N2 C2 N3 0.2 179.7
C2 N2 HN21 HN22 234.7 179.7
HN22 N2 C2 N3 234.8 359.4
C2 N2 HN22 HN21 128.3 180.3
C4 N9 C1' C8 179.7 180.0
C1' N9 C8 N7 179.7 180.0
C1' N9 C8 H81 359.8 0.1
C4' O4' C1' N9 209.1 214.2
O4' C1' N9 C2' 116.5 118.0
O4' C1' N9 H11 236.2 239.0
C2' C1' N9 H11 119.7 121.0
N9 C1' C2' C3' 158.2 121.5
N9 C1' C2' H21 283.5 240.2
N9 C1' C2' H22 32.9 2.8
C6 N6 HN61 HN62 234.7 180.0
C6 N6 HN62 HN61 131.0 180.0
OP2 P OP1 O5' 234.4 120.0
OP2 P OP1 OP3 122.0 240.0
O5' P OP1 OP3 247.6 120.0
OP1 P O5' C5' 59.0 180.0
OP1 P OP3 H3P 180.0 60.0
OP1 P OP2 O5' 126.8 240.0
OP1 P OP2 OP3 240.3 120.0
OP2 P OP1 H1P 180.0 300.0
O5' P OP2 OP3 113.4 240.0
OP2 P O5' C5' 190.8 60.0
OP2 P OP3 H3P 51.5 180.0
OP1 P O5' OP2 228.2 120.0
OP1 P O5' OP3 112.1 240.0
O5' P OP1 H1P 305.6 180.0
OP2 P O5' OP3 243.9 120.1
O5' P OP3 H3P 296.2 300.0
P O5' C5' C4' 166.2 180.0
P O5' C5' H52 291.5 300.0
P O5' C5' H51 41.0 60.0
OP1 P OP3 OP2 128.5 240.0
OP1 P OP3 O5' 243.8 120.0
OP3 P OP1 H1P 58.0 60.0
OP2 P OP3 O5' 115.3 240.0
OP3 P O5' C5' 306.9 299.9
H1P OP1 P OP2 180.0 300.0
H1P OP1 P O5' 305.6 180.0
H1P OP1 P OP3 58.0 60.0
C5' O5' P OP3 306.9 299.9
C4' C5' O5' H52 234.7 240.0
C4' C5' O5' H51 125.2 120.1
O5' C5' C4' O4' 286.2 65.7
O5' C5' C4' C3' 45.8 180.0
O5' C5' C4' H4 164.1 302.9
H52 C5' O5' H51 250.5 240.1
O5' C5' C4' H52 125.3 120.0
O5' C5' C4' H51 234.7 240.0
H52 C5' C4' H51 109.4 119.9
O4' C4' C5' C3' 240.4 245.7
O4' C4' C5' H4 122.1 122.9
C5' C4' O4' C1' 129.9 158.5
C3' C4' C5' H4 241.7 237.1
C5' C4' C3' C2' 258.4 204.3
C5' C4' C3' O3' 143.8 86.0
C5' C4' C3' H31 22.4 322.5
O5' C5' H52 C4' 235.1 239.9
O5' C5' H52 H51 117.6 119.9
C4' C5' H52 H51 242.5 240.0
H52 C5' C4' O4' 160.9 305.7
H52 C5' C4' C3' 280.5 60.0
H52 C5' C4' H4 38.8 182.8
O5' C5' H51 C4' 124.9 120.1
O5' C5' H51 H52 242.4 240.0
C4' C5' H51 H52 117.5 120.0
H51 C5' C4' O4' 51.5 185.8
H51 C5' C4' C3' 171.1 300.0
H51 C5' C4' H4 289.4 62.9
N9 C1' O4' C4' 209.1 214.2
O4' C4' C5' H52 160.9 305.7
O4' C4' C5' H51 51.5 185.8
C5' C4' O4' C3' 125.1 118.7
C5' C4' O4' H4 243.8 237.2
C3' C4' O4' H4 118.7 118.5
O4' C4' C3' C2' 20.2 323.1
O4' C4' C3' O3' 265.6 204.8
O4' C4' C3' H31 144.2 81.3
C4' O4' C1' C2' 331.9 333.7
C4' O4' C1' H11 91.4 93.1
C3' C4' C5' H52 280.5 60.0
C3' C4' C5' H51 171.1 300.0
C5' C4' C3' O4' 238.2 241.2
C5' C4' C3' H4 116.0 122.8
O4' C4' C3' H4 237.8 241.6
C3' C4' O4' C1' 4.8 39.9
C1' C2' C3' C4' 324.4 20.9
C4' C3' C2' H21 199.1 262.2
C4' C3' C2' H22 89.7 139.5
C2' C3' C4' O3' 114.5 118.2
C2' C3' C4' H31 235.9 241.8
O3' C3' C4' H31 121.4 123.5
C4' C3' O3' HO31 180.0 174.2
H4 C4' C5' H52 38.8 182.8
H4 C4' C5' H51 289.4 62.9
C5' C4' H4 O4' 119.6 123.0
C5' C4' H4 C3' 237.0 237.1
O4' C4' H4 C3' 117.4 114.1
H4 C4' O4' C1' 246.2 281.4
H4 C4' C3' C2' 142.4 81.5
H4 C4' C3' O3' 27.8 323.2
H4 C4' C3' H31 266.4 199.7
N9 C1' O4' C2' 237.2 240.5
N9 C1' O4' H11 117.7 121.0
C1' O4' C4' C3' 4.8 39.9
C1' O4' C4' H4 246.2 281.4
C2' C1' O4' H11 240.5 240.6
O4' C1' C2' C3' 39.8 1.9
O4' C1' C2' H21 165.1 120.7
O4' C1' C2' H22 274.5 243.3
N9 C1' C2' O4' 118.4 119.5
N9 C1' C2' H11 242.2 239.0
C4' C3' C2' C1' 324.4 20.9
O4' C1' C2' H11 123.8 119.4
C3' C2' C1' H21 234.7 241.3
C3' C2' C1' H22 125.3 118.6
C1' C2' C3' O3' 79.4 139.1
C1' C2' C3' H31 200.7 262.7
H21 C2' C1' H22 250.6 237.4
N9 C1' H11 O4' 240.8 239.0
N9 C1' H11 C2' 123.6 121.0
O4' C1' H11 C2' 242.7 242.1
H11 C1' C2' C3' 276.0 242.5
H11 C1' C2' H21 41.3 1.2
H11 C1' C2' H22 150.7 123.8
C2' C3' C4' H4 142.4 81.5
C4' C3' C2' O3' 245.0 241.8
C4' C3' C2' H31 123.7 118.2
C3' C2' C1' H11 276.0 242.5
C1' C2' C3' H21 125.3 118.8
C1' C2' C3' H22 234.7 241.4
H21 C2' C3' H22 109.4 122.6
O3' C3' C2' H31 238.7 236.4
C2' C3' O3' HO31 69.1 61.4
H21 C2' C1' H11 41.3 1.2
C1' C2' H21 C3' 242.3 245.2
C1' C2' H21 H22 121.1 122.6
C3' C2' H21 H22 238.8 237.4
H21 C2' C3' O3' 314.1 20.4
H21 C2' C3' H31 75.4 144.0
H22 C2' C1' H11 150.7 123.8
C1' C2' H22 C3' 117.7 114.8
C1' C2' H22 H21 238.9 237.4
C3' C2' H22 H21 121.2 122.6
H22 C2' C3' O3' 204.6 257.8
H22 C2' C3' H31 325.9 21.4
O3' C3' C4' H4 27.8 323.2
C4' C3' O3' C2' 110.8 112.7
C4' C3' O3' H31 235.5 236.4
O3' C3' C2' H21 314.1 20.4
O3' C3' C2' H22 204.6 257.8
C2' C3' O3' H31 124.7 123.7
H31 C3' C4' H4 266.4 199.7
C4' C3' H31 C2' 242.5 247.3
C4' C3' H31 O3' 121.5 123.6
H31 C3' C2' H21 75.4 144.0
H31 C3' C2' H22 325.9 21.4
C2' C3' H31 O3' 239.0 236.3
H31 C3' O3' HO31 304.4 297.7
HO31 O3' C3' H31 304.4 297.7