Atom Nomenclature for 1A4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 1A4

Atom Name (V3) Atom Name (V2)
CAI CAI
CAD CAD
CAF CAF
SAN SAN
CAS CAS
SAU SAU
OAB OAB
OAC OAC
NAL NAL
CAP CAP
CAK CAK
CAG CAG
CAE CAE
CAH CAH
CAQ CAQ
CAR CAR
CAJ CAJ
SAO SAO
CAT CAT
OAA OAA
NAM NAM
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10