PDB Chemical Component 19Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 19Z
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N01 |
C06 |
1.312 |
1.388 |
N01 |
C11 |
1.497 |
1.465 |
N01 |
HN01 |
1.000 |
0.970 |
N02 |
C10 |
1.378 |
1.347 |
N02 |
HN02 |
1.001 |
0.970 |
N02 |
HN0A |
1.000 |
0.970 |
N03 |
C09 |
1.285 |
1.480 |
N03 |
O20 |
1.331 |
1.218 |
N03 |
O21 |
1.323 |
1.217 |
C04 |
C05 |
1.428 |
1.397 |
C04 |
C09 |
1.428 |
1.378 |
C04 |
H04 |
1.080 |
1.080 |
C05 |
C06 |
1.446 |
1.404 |
C05 |
C10 |
1.384 |
1.475 |
C06 |
C07 |
1.447 |
1.390 |
C07 |
C08 |
1.419 |
1.380 |
C07 |
H07 |
1.080 |
1.080 |
C08 |
C09 |
1.426 |
1.386 |
C08 |
H08 |
1.080 |
1.079 |
C10 |
O18 |
1.213 |
1.216 |
C11 |
C12 |
1.507 |
1.508 |
C11 |
H11 |
1.100 |
1.090 |
C11 |
H11A |
1.100 |
1.089 |
C12 |
C13 |
1.427 |
1.383 |
C12 |
C17 |
1.426 |
1.382 |
C13 |
C14 |
1.421 |
1.382 |
C13 |
H13 |
1.080 |
1.080 |
C14 |
C15 |
1.422 |
1.387 |
C14 |
H14 |
1.080 |
1.080 |
C15 |
C16 |
1.427 |
1.387 |
C15 |
O19 |
1.351 |
1.359 |
C16 |
C17 |
1.419 |
1.382 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
H17 |
1.080 |
1.080 |
O19 |
HO19 |
0.950 |
0.967 |
Bond Angles for 19Z
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C06 |
N01 |
C11 |
124.4 |
120.0 |
C06 |
N01 |
HN01 |
104.8 |
120.0 |
N01 |
C06 |
C05 |
120.0 |
120.2 |
N01 |
C06 |
C07 |
121.4 |
120.1 |
C11 |
N01 |
HN01 |
104.7 |
120.0 |
N01 |
C11 |
C12 |
110.4 |
109.5 |
N01 |
C11 |
H11 |
109.2 |
109.4 |
N01 |
C11 |
H11A |
109.2 |
109.5 |
C10 |
N02 |
HN02 |
120.0 |
120.0 |
C10 |
N02 |
HN0A |
120.0 |
120.0 |
N02 |
C10 |
C05 |
119.3 |
120.0 |
N02 |
C10 |
O18 |
119.1 |
120.0 |
HN02 |
N02 |
HN0A |
120.0 |
119.9 |
C09 |
N03 |
O20 |
120.8 |
119.9 |
C09 |
N03 |
O21 |
120.6 |
120.0 |
N03 |
C09 |
C04 |
120.3 |
119.8 |
N03 |
C09 |
C08 |
120.7 |
119.8 |
O20 |
N03 |
O21 |
118.6 |
120.0 |
C05 |
C04 |
C09 |
121.6 |
119.9 |
C05 |
C04 |
H04 |
119.2 |
120.0 |
C04 |
C05 |
C06 |
119.4 |
119.6 |
C04 |
C05 |
C10 |
118.3 |
120.2 |
C09 |
C04 |
H04 |
119.2 |
120.0 |
C04 |
C09 |
C08 |
119.0 |
120.3 |
C06 |
C05 |
C10 |
122.3 |
120.2 |
C05 |
C06 |
C07 |
118.5 |
119.6 |
C05 |
C10 |
O18 |
121.6 |
120.0 |
C06 |
C07 |
C08 |
121.0 |
120.0 |
C06 |
C07 |
H07 |
119.5 |
120.0 |
C08 |
C07 |
H07 |
119.5 |
120.0 |
C07 |
C08 |
C09 |
120.5 |
120.4 |
C07 |
C08 |
H08 |
119.7 |
119.8 |
C09 |
C08 |
H08 |
119.8 |
119.8 |
C12 |
C11 |
H11 |
109.2 |
109.4 |
C12 |
C11 |
H11A |
109.2 |
109.5 |
C11 |
C12 |
C13 |
120.4 |
120.0 |
C11 |
C12 |
C17 |
119.6 |
119.9 |
H11 |
C11 |
H11A |
109.8 |
109.5 |
C13 |
C12 |
C17 |
120.0 |
120.1 |
C12 |
C13 |
C14 |
120.0 |
120.1 |
C12 |
C13 |
H13 |
120.0 |
119.9 |
C12 |
C17 |
C16 |
120.0 |
120.0 |
C12 |
C17 |
H17 |
120.0 |
120.0 |
C14 |
C13 |
H13 |
120.0 |
120.0 |
C13 |
C14 |
C15 |
120.0 |
119.9 |
C13 |
C14 |
H14 |
120.0 |
120.0 |
C15 |
C14 |
H14 |
120.0 |
120.1 |
C14 |
C15 |
C16 |
120.1 |
119.9 |
C14 |
C15 |
O19 |
119.9 |
120.0 |
C16 |
C15 |
O19 |
120.0 |
120.0 |
C15 |
C16 |
C17 |
120.0 |
119.9 |
C15 |
C16 |
H16 |
120.0 |
120.0 |
C15 |
O19 |
HO19 |
109.5 |
114.0 |
C17 |
C16 |
H16 |
120.0 |
120.0 |
C16 |
C17 |
H17 |
120.0 |
119.9 |
Torsion Angles for 19Z
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C11 |
N01 |
C06 |
HN01 |
240.0 |
180.3 |
C06 |
N01 |
C11 |
C12 |
86.5 |
180.0 |
C06 |
N01 |
C11 |
H11 |
206.5 |
300.0 |
C06 |
N01 |
C11 |
H11A |
326.5 |
60.0 |
C04 |
C05 |
C06 |
N01 |
180.0 |
179.9 |
N01 |
C06 |
C05 |
C10 |
359.7 |
360.0 |
C05 |
C06 |
N01 |
C07 |
179.8 |
180.0 |
N01 |
C06 |
C07 |
C08 |
179.9 |
180.0 |
N01 |
C06 |
C07 |
H07 |
359.9 |
0.1 |
C06 |
N01 |
C11 |
HN01 |
120.0 |
179.7 |
C11 |
N01 |
C06 |
C05 |
171.8 |
174.4 |
C11 |
N01 |
C06 |
C07 |
352.0 |
354.4 |
C12 |
C11 |
N01 |
H11 |
240.0 |
240.1 |
C12 |
C11 |
N01 |
H11A |
120.0 |
120.1 |
N01 |
C11 |
C12 |
C13 |
59.2 |
90.0 |
N01 |
C11 |
C12 |
C17 |
239.6 |
269.7 |
H11 |
C11 |
N01 |
H11A |
240.0 |
240.0 |
C06 |
N01 |
HN01 |
C11 |
227.6 |
180.3 |
HN01 |
N01 |
C06 |
C05 |
291.8 |
354.1 |
HN01 |
N01 |
C06 |
C07 |
111.9 |
174.1 |
HN01 |
N01 |
C11 |
C12 |
326.5 |
0.3 |
HN01 |
N01 |
C11 |
H11 |
86.5 |
120.2 |
HN01 |
N01 |
C11 |
H11A |
206.5 |
240.3 |
HN02 |
N02 |
C10 |
HN0A |
180.0 |
180.0 |
C04 |
C05 |
C10 |
N02 |
30.5 |
5.9 |
C06 |
C05 |
C10 |
N02 |
210.9 |
185.8 |
C05 |
C10 |
N02 |
O18 |
179.2 |
180.0 |
C10 |
N02 |
HN02 |
HN0A |
180.0 |
180.0 |
HN02 |
N02 |
C10 |
C05 |
179.2 |
0.0 |
HN02 |
N02 |
C10 |
O18 |
0.0 |
180.0 |
C10 |
N02 |
HN0A |
HN02 |
180.0 |
180.0 |
HN0A |
N02 |
C10 |
C05 |
359.2 |
180.0 |
HN0A |
N02 |
C10 |
O18 |
180.0 |
360.0 |
O20 |
N03 |
C09 |
O21 |
180.0 |
180.1 |
C05 |
C04 |
C09 |
N03 |
180.0 |
180.0 |
N03 |
C09 |
C04 |
H04 |
360.0 |
0.3 |
C04 |
C09 |
N03 |
C08 |
180.0 |
180.0 |
C07 |
C08 |
C09 |
N03 |
180.0 |
180.0 |
N03 |
C09 |
C08 |
H08 |
0.0 |
0.1 |
C09 |
N03 |
O20 |
O21 |
180.0 |
179.9 |
O20 |
N03 |
C09 |
C04 |
0.1 |
0.0 |
O20 |
N03 |
C09 |
C08 |
180.1 |
180.0 |
C09 |
N03 |
O21 |
O20 |
180.0 |
180.1 |
O21 |
N03 |
C09 |
C04 |
180.1 |
180.0 |
O21 |
N03 |
C09 |
C08 |
0.0 |
359.9 |
N01 |
C06 |
C05 |
C04 |
180.0 |
179.9 |
N02 |
C10 |
C05 |
C04 |
30.5 |
5.9 |
N03 |
C09 |
C04 |
C05 |
180.0 |
180.0 |
C09 |
C04 |
C05 |
H04 |
180.0 |
180.3 |
C05 |
C04 |
C09 |
C08 |
360.0 |
360.0 |
C06 |
C05 |
C04 |
C10 |
179.6 |
180.1 |
C04 |
C05 |
C06 |
C07 |
359.9 |
360.0 |
C04 |
C05 |
C10 |
O18 |
209.7 |
185.9 |
C04 |
C09 |
N03 |
O20 |
0.1 |
0.0 |
C04 |
C09 |
N03 |
O21 |
180.1 |
180.0 |
N03 |
C09 |
C04 |
C08 |
180.0 |
180.0 |
C05 |
C04 |
C09 |
H04 |
180.0 |
179.7 |
C09 |
C04 |
C05 |
C06 |
0.1 |
0.0 |
C09 |
C04 |
C05 |
C10 |
180.5 |
180.0 |
C07 |
C08 |
C09 |
C04 |
360.0 |
360.0 |
C04 |
C09 |
C08 |
H08 |
180.0 |
180.1 |
C05 |
C04 |
H04 |
C09 |
180.0 |
180.3 |
H04 |
C04 |
C05 |
C06 |
180.1 |
179.7 |
H04 |
C04 |
C05 |
C10 |
0.4 |
359.7 |
H04 |
C04 |
C09 |
C08 |
180.0 |
180.3 |
C05 |
C06 |
N01 |
C11 |
171.8 |
174.4 |
C05 |
C06 |
N01 |
HN01 |
291.8 |
354.1 |
N01 |
C06 |
C05 |
C07 |
180.2 |
180.0 |
N02 |
C10 |
C05 |
C06 |
210.9 |
185.8 |
C06 |
C05 |
C04 |
C09 |
0.1 |
0.0 |
C06 |
C05 |
C04 |
H04 |
180.1 |
179.7 |
C04 |
C05 |
C06 |
C10 |
180.4 |
179.9 |
C06 |
C05 |
C10 |
O18 |
30.1 |
5.8 |
C05 |
C06 |
C07 |
C08 |
0.1 |
360.0 |
C05 |
C06 |
C07 |
H07 |
180.1 |
180.0 |
C05 |
C10 |
N02 |
HN02 |
179.2 |
0.0 |
C05 |
C10 |
N02 |
HN0A |
359.2 |
180.0 |
N02 |
C10 |
C05 |
O18 |
180.8 |
180.0 |
C10 |
C05 |
C04 |
C09 |
180.5 |
180.0 |
C10 |
C05 |
C04 |
H04 |
0.4 |
359.7 |
C04 |
C05 |
C10 |
C06 |
179.6 |
180.1 |
C10 |
C05 |
C06 |
C07 |
179.5 |
180.0 |
C07 |
C06 |
N01 |
C11 |
352.0 |
354.4 |
C07 |
C06 |
N01 |
HN01 |
111.9 |
174.1 |
N01 |
C06 |
C07 |
C05 |
179.8 |
180.0 |
C07 |
C06 |
C05 |
C10 |
179.5 |
180.0 |
C08 |
C07 |
C06 |
H07 |
180.0 |
180.0 |
C06 |
C07 |
C08 |
C09 |
360.0 |
0.0 |
C06 |
C07 |
C08 |
H08 |
180.0 |
180.0 |
N03 |
C09 |
C08 |
C07 |
180.0 |
180.0 |
C04 |
C09 |
C08 |
C07 |
360.0 |
360.0 |
C06 |
C07 |
C08 |
H07 |
180.0 |
180.0 |
C09 |
C08 |
C07 |
H08 |
180.0 |
180.1 |
C06 |
C07 |
H07 |
C08 |
180.0 |
180.0 |
H07 |
C07 |
C08 |
C09 |
180.0 |
180.0 |
H07 |
C07 |
C08 |
H08 |
360.0 |
359.9 |
C08 |
C09 |
N03 |
O20 |
180.1 |
180.0 |
C08 |
C09 |
N03 |
O21 |
0.0 |
359.9 |
N03 |
C09 |
C08 |
C04 |
180.0 |
180.0 |
C08 |
C09 |
C04 |
H04 |
180.0 |
180.3 |
C09 |
C08 |
C07 |
H07 |
180.0 |
180.0 |
C07 |
C08 |
C09 |
H08 |
180.0 |
179.9 |
H08 |
C08 |
C07 |
H07 |
360.0 |
359.9 |
C07 |
C08 |
H08 |
C09 |
180.0 |
180.1 |
O18 |
C10 |
N02 |
HN02 |
0.0 |
180.0 |
O18 |
C10 |
N02 |
HN0A |
180.0 |
360.0 |
N02 |
C10 |
O18 |
C05 |
179.2 |
180.0 |
C12 |
C11 |
N01 |
HN01 |
326.5 |
0.3 |
N01 |
C11 |
C12 |
H11 |
120.0 |
119.9 |
N01 |
C11 |
C12 |
H11A |
240.0 |
239.9 |
H11 |
C11 |
C12 |
H11A |
120.0 |
120.1 |
C13 |
C12 |
C11 |
C17 |
179.6 |
180.3 |
C11 |
C12 |
C13 |
C14 |
180.5 |
180.0 |
C11 |
C12 |
C13 |
H13 |
0.5 |
359.9 |
C11 |
C12 |
C17 |
C16 |
179.4 |
179.8 |
C11 |
C12 |
C17 |
H17 |
359.4 |
360.0 |
H11 |
C11 |
N01 |
HN01 |
86.5 |
120.2 |
N01 |
C11 |
H11 |
C12 |
239.2 |
240.1 |
N01 |
C11 |
H11 |
H11A |
119.6 |
120.0 |
C12 |
C11 |
H11 |
H11A |
240.4 |
240.0 |
H11 |
C11 |
C12 |
C13 |
299.2 |
330.1 |
H11 |
C11 |
C12 |
C17 |
119.6 |
149.8 |
H11A |
C11 |
N01 |
HN01 |
206.5 |
240.3 |
N01 |
C11 |
H11A |
C12 |
120.8 |
120.0 |
N01 |
C11 |
H11A |
H11 |
240.4 |
240.0 |
C12 |
C11 |
H11A |
H11 |
119.6 |
120.0 |
H11A |
C11 |
C12 |
C13 |
179.2 |
210.1 |
H11A |
C11 |
C12 |
C17 |
359.6 |
29.8 |
C13 |
C12 |
C11 |
H11 |
299.2 |
330.1 |
C13 |
C12 |
C11 |
H11A |
179.2 |
210.1 |
C11 |
C12 |
C13 |
C17 |
180.5 |
179.7 |
C13 |
C12 |
C17 |
C16 |
359.9 |
359.5 |
C13 |
C12 |
C17 |
H17 |
179.9 |
179.7 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.2 |
C12 |
C13 |
C14 |
C15 |
0.0 |
359.9 |
C12 |
C13 |
C14 |
H14 |
180.0 |
180.0 |
C17 |
C12 |
C11 |
H11 |
119.6 |
149.8 |
C17 |
C12 |
C11 |
H11A |
359.6 |
29.8 |
C11 |
C12 |
C17 |
C13 |
179.6 |
180.3 |
C17 |
C12 |
C13 |
C14 |
0.1 |
0.3 |
C17 |
C12 |
C13 |
H13 |
180.1 |
180.2 |
C15 |
C16 |
C17 |
C12 |
0.1 |
0.5 |
C12 |
C17 |
C16 |
H16 |
180.1 |
180.2 |
C16 |
C17 |
C12 |
H17 |
180.0 |
179.8 |
C14 |
C13 |
C12 |
C17 |
0.1 |
0.3 |
C12 |
C13 |
C14 |
H13 |
180.0 |
179.8 |
C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
C13 |
C14 |
C15 |
C16 |
360.0 |
0.0 |
C13 |
C14 |
C15 |
O19 |
179.9 |
180.0 |
H13 |
C13 |
C12 |
C17 |
180.1 |
180.2 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.2 |
H13 |
C13 |
C14 |
C15 |
180.0 |
180.1 |
H13 |
C13 |
C14 |
H14 |
360.0 |
0.1 |
C15 |
C14 |
C13 |
H13 |
180.0 |
180.1 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
C16 |
C15 |
C14 |
O19 |
180.1 |
180.0 |
C14 |
C15 |
C16 |
C17 |
0.0 |
359.7 |
C14 |
C15 |
C16 |
H16 |
180.0 |
180.0 |
C14 |
C15 |
O19 |
HO19 |
180.0 |
90.0 |
H14 |
C14 |
C13 |
H13 |
360.0 |
0.1 |
C13 |
C14 |
H14 |
C15 |
180.0 |
180.0 |
H14 |
C14 |
C15 |
C16 |
180.0 |
180.0 |
H14 |
C14 |
C15 |
O19 |
359.9 |
360.0 |
C12 |
C17 |
C16 |
C15 |
0.1 |
0.5 |
C16 |
C15 |
C14 |
H14 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
O19 |
179.9 |
180.0 |
C16 |
C15 |
O19 |
HO19 |
359.9 |
270.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
179.7 |
C15 |
C16 |
C17 |
H17 |
180.1 |
180.3 |
O19 |
C15 |
C14 |
H14 |
359.9 |
360.0 |
C14 |
C15 |
O19 |
C16 |
180.1 |
180.0 |
O19 |
C15 |
C16 |
C17 |
180.1 |
179.8 |
O19 |
C15 |
C16 |
H16 |
0.1 |
0.1 |
C12 |
C17 |
C16 |
H17 |
180.0 |
180.2 |
C17 |
C16 |
C15 |
O19 |
180.1 |
179.8 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.3 |
H16 |
C16 |
C15 |
O19 |
0.1 |
0.1 |
C15 |
C16 |
H16 |
C17 |
180.0 |
179.7 |
H16 |
C16 |
C17 |
H17 |
0.1 |
0.0 |
C12 |
C17 |
H17 |
C16 |
180.0 |
179.8 |
H17 |
C17 |
C16 |
H16 |
0.1 |
0.0 |