PDB Chemical Component 19Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 19Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C22 |
C21 |
1.506 |
1.530 |
| O20 |
C19 |
1.230 |
1.214 |
| C21 |
C1 |
1.506 |
1.507 |
| C19 |
C5 |
1.494 |
1.418 |
| C1 |
C5 |
1.474 |
1.369 |
| C1 |
N2 |
1.363 |
1.356 |
| C5 |
C4 |
1.476 |
1.474 |
| N2 |
C3 |
1.353 |
1.372 |
| C4 |
C3 |
1.479 |
1.404 |
| C4 |
C6 |
1.477 |
1.398 |
| O17 |
C6 |
1.371 |
1.355 |
| O17 |
C18 |
1.438 |
1.429 |
| C3 |
N9 |
1.362 |
1.331 |
| C6 |
N7 |
1.363 |
1.327 |
| N9 |
C8 |
1.373 |
1.323 |
| N7 |
C8 |
1.368 |
1.328 |
| C8 |
S10 |
1.725 |
1.762 |
| C12 |
N13 |
1.351 |
1.318 |
| C12 |
C11 |
1.411 |
1.389 |
| S10 |
C11 |
1.714 |
1.762 |
| N13 |
C14 |
1.342 |
1.319 |
| C11 |
C16 |
1.396 |
1.393 |
| C14 |
C15 |
1.398 |
1.383 |
| C16 |
C15 |
1.397 |
1.386 |
| C19 |
H1 |
1.080 |
1.080 |
| C21 |
H2 |
1.100 |
1.090 |
| C21 |
H3 |
1.100 |
1.090 |
| C22 |
H4 |
1.100 |
1.090 |
| C22 |
H5 |
1.100 |
1.091 |
| C22 |
H6 |
1.100 |
1.090 |
| C18 |
H7 |
1.100 |
1.090 |
| C18 |
H8 |
1.101 |
1.090 |
| C18 |
H9 |
1.100 |
1.090 |
| N2 |
H10 |
1.000 |
0.970 |
| C16 |
H11 |
1.080 |
1.081 |
| C15 |
H12 |
1.080 |
1.080 |
| C14 |
H13 |
1.080 |
1.080 |
| C12 |
H14 |
1.080 |
1.080 |
Bond Angles for 19Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C22 |
C21 |
H2 |
109.1 |
109.4 |
| C22 |
C21 |
H3 |
109.1 |
109.5 |
| O20 |
C19 |
C5 |
121.5 |
120.0 |
| O20 |
C19 |
H1 |
119.3 |
120.1 |
| C21 |
C1 |
N2 |
127.2 |
125.2 |
| C19 |
C5 |
C4 |
122.2 |
126.9 |
| C5 |
C19 |
H1 |
119.2 |
119.9 |
| C1 |
C5 |
C4 |
107.7 |
106.2 |
| C1 |
N2 |
C3 |
114.3 |
110.6 |
| C1 |
N2 |
H10 |
122.9 |
124.7 |
| C5 |
C4 |
C3 |
103.9 |
106.0 |
| C5 |
C4 |
C6 |
138.6 |
135.0 |
| C6 |
C4 |
C3 |
117.4 |
119.0 |
| C4 |
C3 |
N9 |
118.9 |
118.6 |
| C4 |
C6 |
N7 |
117.3 |
118.5 |
| O17 |
C6 |
N7 |
120.5 |
120.7 |
| O17 |
C18 |
H7 |
109.5 |
109.5 |
| O17 |
C18 |
H8 |
109.4 |
109.4 |
| O17 |
C18 |
H9 |
109.5 |
109.4 |
| C6 |
N7 |
C8 |
124.0 |
120.9 |
| N9 |
C8 |
S10 |
121.8 |
118.8 |
| N7 |
C8 |
S10 |
118.1 |
118.8 |
| C8 |
S10 |
C11 |
108.5 |
100.0 |
| S10 |
C11 |
C16 |
120.9 |
120.5 |
| N13 |
C14 |
H13 |
120.0 |
119.5 |
| C11 |
C16 |
C15 |
118.4 |
118.4 |
| C11 |
C16 |
H11 |
120.8 |
120.8 |
| C14 |
C15 |
H12 |
119.5 |
120.4 |
| C15 |
C16 |
H11 |
120.7 |
120.8 |
| C16 |
C15 |
H12 |
119.5 |
120.4 |
| H2 |
C21 |
H3 |
109.4 |
109.5 |
| H4 |
C22 |
H5 |
109.5 |
109.5 |
| H4 |
C22 |
H6 |
109.4 |
109.4 |
| H5 |
C22 |
H6 |
109.5 |
109.4 |
| H7 |
C18 |
H8 |
109.5 |
109.5 |
| H7 |
C18 |
H9 |
109.5 |
109.5 |
| H8 |
C18 |
H9 |
109.5 |
109.5 |
Torsion Angles for 19Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C22 |
C21 |
C1 |
N2 |
31.4 |
265.0 |
| H2 |
C21 |
C22 |
H3 |
240.5 |
120.0 |
| O20 |
C19 |
C5 |
C4 |
180.4 |
360.0 |
| C5 |
C19 |
O20 |
H1 |
180.0 |
180.3 |
| C21 |
C1 |
C5 |
C4 |
180.8 |
180.2 |
| C21 |
C1 |
N2 |
C3 |
179.4 |
179.8 |
| C21 |
C1 |
N2 |
H10 |
359.4 |
360.0 |
| O20 |
C19 |
C5 |
H1 |
180.0 |
179.7 |
| C1 |
C5 |
C19 |
C4 |
180.6 |
180.4 |
| C19 |
C5 |
C4 |
C3 |
180.3 |
180.1 |
| C19 |
C5 |
C4 |
C6 |
0.4 |
0.0 |
| C19 |
C5 |
C1 |
C4 |
179.5 |
179.7 |
| C1 |
C5 |
C19 |
H1 |
180.9 |
0.6 |
| C1 |
C5 |
C4 |
C3 |
359.8 |
359.8 |
| C1 |
C5 |
C4 |
C6 |
180.0 |
179.7 |
| N2 |
C1 |
C5 |
C4 |
359.9 |
0.3 |
| C4 |
C5 |
C19 |
H1 |
0.4 |
180.2 |
| C6 |
C4 |
C5 |
C3 |
180.1 |
179.9 |
| C5 |
C4 |
C3 |
N9 |
180.0 |
180.0 |
| C5 |
C4 |
C6 |
N7 |
180.1 |
180.0 |
| C1 |
N2 |
C3 |
H10 |
180.0 |
180.2 |
| C1 |
N2 |
C3 |
C4 |
359.6 |
0.0 |
| C5 |
C4 |
C3 |
C6 |
180.1 |
179.9 |
| C3 |
C4 |
C6 |
N7 |
0.3 |
359.9 |
| C5 |
C4 |
C6 |
C3 |
179.8 |
180.1 |
| C6 |
C4 |
C3 |
N9 |
359.9 |
0.1 |
| O17 |
C6 |
C4 |
N7 |
179.5 |
180.1 |
| C4 |
C6 |
N7 |
C8 |
359.3 |
0.1 |
| O17 |
C6 |
C4 |
C3 |
179.8 |
180.0 |
| C4 |
C6 |
O17 |
N7 |
180.5 |
179.9 |
| O17 |
C6 |
N7 |
C8 |
179.8 |
180.0 |
| C18 |
O17 |
C6 |
N7 |
33.5 |
0.1 |
| H7 |
C18 |
O17 |
H8 |
240.0 |
240.0 |
| H7 |
C18 |
O17 |
H9 |
120.0 |
120.0 |
| H8 |
C18 |
O17 |
H9 |
240.0 |
240.0 |
| C1 |
N2 |
C3 |
N9 |
180.0 |
180.2 |
| C3 |
N9 |
C8 |
S10 |
180.3 |
180.0 |
| N7 |
C6 |
C4 |
C3 |
0.3 |
359.9 |
| C6 |
N7 |
C8 |
S10 |
179.9 |
180.0 |
| C4 |
C3 |
N9 |
C8 |
0.3 |
0.0 |
| N7 |
C8 |
N9 |
S10 |
179.0 |
180.0 |
| N9 |
C8 |
S10 |
C11 |
166.1 |
174.8 |
| N9 |
C8 |
N7 |
S10 |
180.9 |
180.0 |
| N7 |
C8 |
S10 |
C11 |
347.0 |
354.8 |
| C8 |
S10 |
C11 |
C16 |
321.2 |
95.0 |
| C12 |
N13 |
C14 |
H13 |
179.8 |
179.7 |
| C12 |
C11 |
C16 |
H11 |
180.6 |
180.2 |
| S10 |
C11 |
C16 |
C15 |
179.5 |
180.0 |
| S10 |
C11 |
C16 |
H11 |
359.5 |
359.8 |
| N13 |
C14 |
C15 |
H12 |
180.1 |
180.1 |
| C15 |
C16 |
C11 |
H11 |
180.0 |
180.1 |
| C11 |
C16 |
C15 |
H12 |
179.7 |
179.9 |
| C14 |
C15 |
C16 |
H11 |
179.7 |
180.1 |
| C16 |
C15 |
C14 |
H12 |
180.0 |
180.0 |
| C11 |
C16 |
C15 |
H11 |
180.0 |
179.9 |
| C14 |
C15 |
C16 |
H12 |
180.0 |
180.0 |
| O20 |
C19 |
H1 |
C5 |
180.0 |
180.3 |
| H1 |
C19 |
C5 |
C4 |
0.4 |
180.2 |
| C22 |
C21 |
H2 |
H3 |
119.4 |
240.0 |
| H2 |
C21 |
C1 |
N2 |
271.1 |
25.0 |
| C22 |
C21 |
H3 |
H2 |
240.6 |
120.0 |
| H3 |
C21 |
C1 |
N2 |
151.6 |
145.0 |
| H4 |
C22 |
C21 |
H2 |
300.2 |
180.0 |
| H4 |
C22 |
C21 |
H3 |
59.8 |
60.0 |
| H5 |
C22 |
H4 |
H6 |
120.0 |
119.9 |
| H5 |
C22 |
C21 |
H2 |
60.2 |
300.0 |
| H5 |
C22 |
C21 |
H3 |
179.8 |
180.0 |
| H4 |
C22 |
H5 |
H6 |
240.0 |
240.1 |
| H6 |
C22 |
C21 |
H2 |
180.3 |
60.0 |
| H6 |
C22 |
C21 |
H3 |
299.8 |
300.0 |
| H4 |
C22 |
H6 |
H5 |
120.0 |
119.9 |
| O17 |
C18 |
H7 |
H8 |
120.0 |
119.9 |
| O17 |
C18 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
C18 |
H7 |
H9 |
120.0 |
120.1 |
| O17 |
C18 |
H8 |
H7 |
240.0 |
240.0 |
| O17 |
C18 |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
C18 |
H8 |
H9 |
240.0 |
239.9 |
| O17 |
C18 |
H9 |
H7 |
120.1 |
120.0 |
| O17 |
C18 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C18 |
H9 |
H8 |
120.0 |
120.0 |
| C1 |
N2 |
H10 |
C3 |
180.0 |
179.8 |
| C11 |
C16 |
H11 |
C15 |
180.0 |
180.1 |
| H11 |
C16 |
C15 |
H12 |
359.7 |
0.1 |
| H12 |
C15 |
C16 |
H11 |
359.7 |
0.1 |
| H13 |
C14 |
C15 |
H12 |
0.1 |
0.1 |