Atom Nomenclature for 19G

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 19G

Atom Name (V3) Atom Name (V2)
OAC OAC
CAQ CAQ
OAD OAD
CAW CAW
S S
CAX CAX
CAH CAH
CAF CAF
CAG CAG
CAI CAI
CAY CAY
CAV CAV
CAN CAN
CAL CAL
CAM CAM
OAO OAO
CAT CAT
CAJ CAJ
CAR CAR
CAA CAA
CAU CAU
CL CL
CAS CAS
CAB CAB
CAK CAK
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19