Atom Nomenclature for 197

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 197

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
N10 N10
N11 N11
C12 C12
C13 C13
O14 O14
O15 O15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
N21 N21
C22 C22
C23 C23
C24 C24
O25 O25
C46 C46
C47 C47
C48 C48
C49 C49
C50 C50
C55 C55
C56 C56
C57 C57
C58 C58
C59 C59
C60 C60
C68 C68
O69 O69
O70 O70
C71 C71
O72 O72
H1 H1
H2 H2
H5 H5
H71A 1H7
H72 2H7
H8 H8
H10 H10
H11 H11
H131 1H13
H132 2H13
H133 3H13
H16 H16
H171 1H17
H172 2H17
H181 1H18
H182 2H18
H191 1H19
H192 2H19
H201 1H20
H202 2H20
H231 1H23
H232 2H23
H46 H46
H47 H47
H49 H49
H50 H50
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H69 H69
H71 H71