Atom Nomenclature for 18Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 18Z

Atom Name (V3) Atom Name (V2)
N01 N01
N02 N02
N03 N03
N04 N04
N05 N05
N06 N06
N07 N07
N08 N08
N09 N09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
O28 O28
O29 O29
O30 O30
HN01 HN01
HN0A HN0A
HN02 HN02
HN03 HN03
HN06 HN06
HN0B HN0B
HN08 HN08
H10 H10
H13 H13
H17 H17
H17A H17A
H19 H19
H21 H21
H22 H22
H22A H22A
H23 H23
H23A H23A
H24 H24
H24A H24A
H25 H25
H25A H25A
H26 H26
H26A H26A
H27 H27
H27A H27A