PDB Chemical Component 18Q
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 18Q
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP2 |
P |
1.512 |
1.480 |
| O5' |
P |
1.614 |
1.610 |
| P |
OP3 |
1.602 |
1.611 |
| P |
OP1 |
1.509 |
1.610 |
| C1' |
N1 |
1.466 |
1.465 |
| N1 |
C2 |
1.422 |
1.342 |
| N1 |
C6 |
1.343 |
1.358 |
| O2 |
C2 |
1.255 |
1.215 |
| C2 |
N3 |
1.342 |
1.344 |
| N3 |
C4 |
1.339 |
1.350 |
| N3 |
HN3 |
1.000 |
0.970 |
| C5 |
C4 |
1.489 |
1.471 |
| C4 |
O4 |
1.248 |
1.216 |
| C6 |
C5 |
1.386 |
1.382 |
| C5 |
C21 |
1.502 |
1.471 |
| C6 |
H6 |
1.080 |
1.079 |
| C2' |
C1' |
1.528 |
1.541 |
| O4' |
C1' |
1.435 |
1.438 |
| C1' |
H1' |
1.100 |
1.089 |
| C3' |
C2' |
1.511 |
1.548 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.100 |
1.090 |
| O22 |
C21 |
1.217 |
1.217 |
| C21 |
N23 |
1.327 |
1.348 |
| N23 |
C24 |
1.453 |
1.465 |
| N23 |
HN23 |
1.000 |
0.970 |
| C24 |
C25 |
1.506 |
1.508 |
| C24 |
H24 |
1.100 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| S26 |
C25 |
1.730 |
1.759 |
| C25 |
C29 |
1.370 |
1.334 |
| S26 |
C27 |
1.726 |
1.759 |
| C27 |
C28 |
1.394 |
1.334 |
| C27 |
H27 |
1.080 |
1.080 |
| C28 |
C29 |
1.396 |
1.384 |
| C28 |
H28 |
1.080 |
1.080 |
| C29 |
H29 |
1.080 |
1.080 |
| O3' |
C3' |
1.430 |
1.429 |
| C3' |
C4' |
1.522 |
1.549 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.968 |
| C4' |
C5' |
1.527 |
1.529 |
| C4' |
O4' |
1.437 |
1.446 |
| C4' |
H4' |
1.100 |
1.090 |
| C5' |
O5' |
1.423 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| OP1 |
HOP1 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.967 |
Bond Angles for 18Q
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP3 |
107.9 |
109.4 |
| O5' |
P |
OP3 |
100.9 |
109.5 |
| O5' |
P |
OP1 |
110.0 |
109.5 |
| OP1 |
P |
OP3 |
109.5 |
109.4 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| P |
OP1 |
HOP1 |
109.5 |
114.0 |
| C2 |
N1 |
C6 |
121.1 |
121.6 |
| N1 |
C2 |
N3 |
120.6 |
122.1 |
| N1 |
C6 |
C5 |
119.7 |
119.3 |
| N1 |
C6 |
H6 |
120.1 |
120.4 |
| O2 |
C2 |
N3 |
118.8 |
119.0 |
| C2 |
N3 |
C4 |
121.1 |
120.5 |
| C2 |
N3 |
HN3 |
119.5 |
119.7 |
| C4 |
N3 |
HN3 |
119.4 |
119.8 |
| N3 |
C4 |
O4 |
119.8 |
120.7 |
| C6 |
C5 |
C21 |
119.8 |
121.0 |
| C5 |
C21 |
N23 |
119.9 |
120.0 |
| C2' |
C1' |
H1' |
108.0 |
109.9 |
| O4' |
C1' |
H1' |
109.2 |
109.9 |
| C3' |
C2' |
H2' |
111.5 |
110.5 |
| C3' |
C2' |
H2'A |
111.5 |
110.6 |
| H2' |
C2' |
H2'A |
109.5 |
110.4 |
| O22 |
C21 |
N23 |
120.6 |
120.0 |
| C21 |
N23 |
C24 |
124.0 |
120.0 |
| C21 |
N23 |
HN23 |
118.0 |
120.0 |
| C24 |
N23 |
HN23 |
118.0 |
120.0 |
| N23 |
C24 |
C25 |
105.3 |
109.5 |
| N23 |
C24 |
H24 |
110.5 |
109.4 |
| N23 |
C24 |
H24A |
110.5 |
109.5 |
| C25 |
C24 |
H24 |
110.5 |
109.4 |
| C25 |
C24 |
H24A |
110.5 |
109.5 |
| C24 |
C25 |
C29 |
133.1 |
125.2 |
| H24 |
C24 |
H24A |
109.5 |
109.5 |
| S26 |
C25 |
C29 |
109.2 |
109.6 |
| C25 |
C29 |
C28 |
112.2 |
114.9 |
| C25 |
C29 |
H29 |
123.9 |
122.5 |
| S26 |
C27 |
C28 |
105.4 |
109.6 |
| S26 |
C27 |
H27 |
127.3 |
125.2 |
| C28 |
C27 |
H27 |
127.3 |
125.2 |
| C27 |
C28 |
C29 |
117.6 |
114.9 |
| C27 |
C28 |
H28 |
121.2 |
122.6 |
| C29 |
C28 |
H28 |
121.2 |
122.5 |
| C28 |
C29 |
H29 |
123.9 |
122.6 |
| O3' |
C3' |
C4' |
106.3 |
110.9 |
| O3' |
C3' |
H3' |
114.3 |
110.8 |
| C4' |
C3' |
H3' |
112.8 |
110.9 |
| C3' |
C4' |
C5' |
113.5 |
110.6 |
| C3' |
C4' |
O4' |
106.3 |
103.6 |
| C3' |
C4' |
H4' |
108.0 |
110.7 |
| O4' |
C4' |
C5' |
111.8 |
110.6 |
| C5' |
C4' |
H4' |
108.0 |
110.5 |
| C4' |
C5' |
O5' |
109.4 |
109.5 |
| C4' |
C5' |
H5' |
109.5 |
109.5 |
| C4' |
C5' |
H5'A |
109.5 |
109.5 |
| O4' |
C4' |
H4' |
109.1 |
110.6 |
| O5' |
C5' |
H5' |
109.5 |
109.5 |
| O5' |
C5' |
H5'A |
109.5 |
109.5 |
| H5' |
C5' |
H5'A |
109.5 |
109.4 |
Torsion Angles for 18Q
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
P |
OP2 |
OP3 |
251.4 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
125.2 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
0.0 |
180.0 |
| OP2 |
P |
OP1 |
HOP1 |
360.0 |
60.0 |
| OP2 |
P |
O5' |
OP3 |
113.3 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
244.3 |
120.0 |
| O5' |
P |
OP3 |
HOP3 |
113.7 |
60.0 |
| O5' |
P |
OP1 |
HOP1 |
234.5 |
180.0 |
| O5' |
P |
OP3 |
OP1 |
244.0 |
120.0 |
| OP3 |
P |
OP1 |
HOP1 |
124.4 |
300.0 |
| OP2 |
P |
OP1 |
OP3 |
235.6 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
110.1 |
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
229.7 |
300.0 |
| C1' |
N1 |
C6 |
H6 |
0.0 |
0.3 |
| C2 |
N1 |
C6 |
C5 |
359.2 |
0.0 |
| C2 |
N1 |
C6 |
H6 |
179.2 |
180.0 |
| O2 |
C2 |
N1 |
N3 |
180.3 |
180.1 |
| N1 |
C2 |
N3 |
C4 |
0.1 |
0.0 |
| N1 |
C2 |
N3 |
HN3 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.3 |
360.0 |
| N1 |
C6 |
C5 |
C21 |
179.6 |
180.0 |
| O2 |
C2 |
N1 |
C6 |
180.6 |
180.1 |
| N1 |
C2 |
O2 |
N3 |
179.7 |
179.9 |
| O2 |
C2 |
N3 |
C4 |
179.8 |
179.9 |
| O2 |
C2 |
N3 |
HN3 |
359.7 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
0.3 |
360.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
O4 |
180.2 |
180.0 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
180.0 |
| HN3 |
N3 |
C4 |
O4 |
0.2 |
360.0 |
| N1 |
C6 |
C5 |
C4 |
0.9 |
0.0 |
| C5 |
C4 |
N3 |
HN3 |
180.1 |
180.0 |
| O4 |
C4 |
N3 |
HN3 |
0.2 |
360.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C21 |
N23 |
186.8 |
174.4 |
| O22 |
C21 |
C5 |
N23 |
178.8 |
180.0 |
| C5 |
C21 |
N23 |
C24 |
178.8 |
185.1 |
| C5 |
C21 |
N23 |
HN23 |
358.8 |
5.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C21 |
359.6 |
0.0 |
| O4' |
C1' |
C2' |
H1' |
117.5 |
119.5 |
| C2' |
C1' |
O4' |
H1' |
243.3 |
240.5 |
| C3' |
C2' |
C1' |
H1' |
272.8 |
242.5 |
| H2' |
C2' |
C3' |
H2'A |
122.7 |
122.5 |
| H2' |
C2' |
C1' |
H1' |
31.5 |
1.2 |
| C3' |
C2' |
H2' |
H2'A |
236.2 |
237.3 |
| H2'A |
C2' |
C1' |
H1' |
154.2 |
123.7 |
| C3' |
C2' |
H2'A |
H2' |
123.8 |
122.6 |
| C5 |
C21 |
O22 |
N23 |
181.2 |
180.0 |
| O22 |
C21 |
N23 |
C24 |
360.0 |
5.1 |
| O22 |
C21 |
N23 |
HN23 |
180.0 |
185.1 |
| C24 |
N23 |
C21 |
HN23 |
180.0 |
180.1 |
| C21 |
N23 |
C24 |
C25 |
272.3 |
180.0 |
| C21 |
N23 |
C24 |
H24 |
31.7 |
299.9 |
| C21 |
N23 |
C24 |
H24A |
153.0 |
60.0 |
| C21 |
N23 |
C24 |
HN23 |
180.0 |
179.9 |
| C25 |
C24 |
N23 |
H24 |
240.7 |
240.1 |
| C25 |
C24 |
N23 |
H24A |
119.4 |
120.0 |
| N23 |
C24 |
C25 |
C29 |
305.1 |
90.0 |
| H24 |
C24 |
N23 |
H24A |
238.7 |
239.9 |
| C21 |
N23 |
HN23 |
C24 |
180.0 |
180.1 |
| HN23 |
N23 |
C24 |
C25 |
92.3 |
0.0 |
| HN23 |
N23 |
C24 |
H24 |
211.7 |
120.0 |
| HN23 |
N23 |
C24 |
H24A |
333.0 |
240.1 |
| C25 |
C24 |
N23 |
HN23 |
92.3 |
0.0 |
| N23 |
C24 |
C25 |
H24 |
119.3 |
119.9 |
| N23 |
C24 |
C25 |
H24A |
240.6 |
240.0 |
| H24 |
C24 |
C25 |
H24A |
121.3 |
120.0 |
| S26 |
C25 |
C24 |
C29 |
179.8 |
180.3 |
| C24 |
C25 |
C29 |
C28 |
179.8 |
179.8 |
| C24 |
C25 |
C29 |
H29 |
359.8 |
0.1 |
| H24 |
C24 |
N23 |
HN23 |
211.7 |
120.0 |
| N23 |
C24 |
H24 |
C25 |
243.9 |
240.0 |
| N23 |
C24 |
H24 |
H24A |
121.9 |
120.0 |
| C25 |
C24 |
H24 |
H24A |
238.1 |
240.0 |
| H24 |
C24 |
C25 |
C29 |
185.8 |
330.0 |
| H24A |
C24 |
N23 |
HN23 |
333.0 |
240.1 |
| N23 |
C24 |
H24A |
C25 |
116.2 |
120.0 |
| N23 |
C24 |
H24A |
H24 |
238.1 |
240.0 |
| C25 |
C24 |
H24A |
H24 |
121.9 |
120.0 |
| H24A |
C24 |
C25 |
C29 |
64.5 |
210.0 |
| S26 |
C25 |
C24 |
H24 |
5.6 |
150.3 |
| S26 |
C25 |
C24 |
H24A |
244.3 |
30.3 |
| C24 |
C25 |
S26 |
C29 |
180.1 |
179.7 |
| S26 |
C25 |
C29 |
C28 |
360.0 |
359.6 |
| S26 |
C25 |
C29 |
H29 |
179.9 |
179.8 |
| C29 |
C25 |
C24 |
H24 |
185.8 |
330.0 |
| C29 |
C25 |
C24 |
H24A |
64.5 |
210.0 |
| C27 |
C28 |
C29 |
C25 |
0.0 |
0.4 |
| C25 |
C29 |
C28 |
H28 |
180.0 |
180.2 |
| C28 |
C29 |
C25 |
H29 |
180.0 |
179.8 |
| C27 |
S26 |
C25 |
C29 |
0.0 |
0.2 |
| C28 |
C27 |
S26 |
H27 |
180.0 |
180.0 |
| S26 |
C27 |
C28 |
C29 |
0.0 |
359.7 |
| S26 |
C27 |
C28 |
H28 |
180.0 |
180.0 |
| C25 |
C29 |
C28 |
C27 |
0.0 |
0.4 |
| S26 |
C27 |
C28 |
H27 |
180.0 |
180.0 |
| C29 |
C28 |
C27 |
H28 |
180.0 |
179.7 |
| C27 |
C28 |
C29 |
H29 |
180.0 |
180.2 |
| S26 |
C27 |
H27 |
C28 |
180.0 |
180.0 |
| H27 |
C27 |
C28 |
C29 |
180.0 |
179.8 |
| H27 |
C27 |
C28 |
H28 |
0.0 |
0.1 |
| C25 |
C29 |
C28 |
H29 |
180.0 |
180.2 |
| C29 |
C28 |
C27 |
H27 |
180.0 |
179.8 |
| C27 |
C28 |
C29 |
H28 |
180.0 |
180.3 |
| H28 |
C28 |
C27 |
H27 |
0.0 |
0.1 |
| C27 |
C28 |
H28 |
C29 |
180.0 |
179.7 |
| H28 |
C28 |
C29 |
H29 |
0.0 |
360.0 |
| C25 |
C29 |
H29 |
C28 |
180.0 |
179.8 |
| H29 |
C29 |
C28 |
H28 |
0.0 |
360.0 |
| O3' |
C3' |
C2' |
H2' |
322.1 |
20.4 |
| O3' |
C3' |
C2' |
H2'A |
199.4 |
257.8 |
| C4' |
C3' |
O3' |
H3' |
234.9 |
236.4 |
| O3' |
C3' |
C4' |
C5' |
148.0 |
86.3 |
| O3' |
C3' |
C4' |
O4' |
271.4 |
204.8 |
| O3' |
C3' |
C4' |
H4' |
28.4 |
323.4 |
| C4' |
C3' |
C2' |
H2' |
210.4 |
262.2 |
| C4' |
C3' |
C2' |
H2'A |
87.7 |
139.6 |
| O3' |
C3' |
C4' |
H3' |
126.1 |
123.6 |
| O4' |
C4' |
C3' |
C5' |
123.3 |
118.5 |
| C5' |
C4' |
C3' |
H4' |
119.7 |
122.9 |
| C3' |
C4' |
C5' |
O5' |
49.5 |
185.0 |
| C3' |
C4' |
C5' |
H5' |
169.5 |
305.0 |
| C3' |
C4' |
C5' |
H5'A |
289.5 |
65.0 |
| O4' |
C4' |
C3' |
H4' |
243.0 |
241.4 |
| H3' |
C3' |
C2' |
H2' |
86.9 |
144.0 |
| H3' |
C3' |
C2' |
H2'A |
324.2 |
21.4 |
| O3' |
C3' |
H3' |
C4' |
238.4 |
236.4 |
| H3' |
C3' |
C4' |
C5' |
22.0 |
322.7 |
| H3' |
C3' |
C4' |
O4' |
145.3 |
81.2 |
| H3' |
C3' |
C4' |
H4' |
262.3 |
199.8 |
| HO3' |
O3' |
C3' |
C4' |
290.9 |
174.2 |
| HO3' |
O3' |
C3' |
H3' |
56.1 |
297.8 |
| C5' |
C4' |
C3' |
H3' |
22.0 |
322.7 |
| C3' |
C4' |
C5' |
O4' |
120.3 |
114.2 |
| C3' |
C4' |
C5' |
H4' |
240.3 |
237.1 |
| O4' |
C4' |
C5' |
H4' |
120.0 |
122.9 |
| O5' |
C5' |
C4' |
H5' |
240.0 |
240.0 |
| O5' |
C5' |
C4' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H5'A |
240.0 |
240.0 |
| C4' |
O4' |
C1' |
H1' |
98.7 |
93.1 |
| O4' |
C4' |
C3' |
H3' |
145.3 |
81.2 |
| C3' |
C4' |
O4' |
C5' |
235.6 |
241.4 |
| C3' |
C4' |
O4' |
H4' |
116.3 |
118.6 |
| C5' |
C4' |
O4' |
H4' |
240.7 |
237.2 |
| O4' |
C4' |
C5' |
O5' |
289.2 |
70.8 |
| O4' |
C4' |
C5' |
H5' |
49.2 |
190.8 |
| O4' |
C4' |
C5' |
H5'A |
169.2 |
310.8 |
| H4' |
C4' |
C3' |
H3' |
262.3 |
199.8 |
| C3' |
C4' |
H4' |
C5' |
123.1 |
122.9 |
| C3' |
C4' |
H4' |
O4' |
244.8 |
245.8 |
| O4' |
C4' |
H4' |
C5' |
238.3 |
237.2 |
| H4' |
C4' |
C5' |
O5' |
169.2 |
307.9 |
| H4' |
C4' |
C5' |
H5' |
289.2 |
67.9 |
| H4' |
C4' |
C5' |
H5'A |
49.2 |
187.9 |
| C5' |
O5' |
P |
OP3 |
283.2 |
65.0 |
| C5' |
O5' |
P |
OP1 |
167.6 |
185.0 |
| O5' |
C5' |
C4' |
H4' |
169.2 |
307.9 |
| C4' |
C5' |
O5' |
H5' |
120.0 |
120.0 |
| C4' |
C5' |
O5' |
H5'A |
240.0 |
240.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
289.2 |
67.9 |
| C4' |
C5' |
H5' |
O5' |
240.0 |
240.0 |
| C4' |
C5' |
H5' |
H5'A |
120.0 |
120.0 |
| O5' |
C5' |
H5' |
H5'A |
240.0 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
49.2 |
187.9 |
| C4' |
C5' |
H5'A |
O5' |
119.9 |
120.0 |
| C4' |
C5' |
H5'A |
H5' |
240.0 |
240.0 |
| O5' |
C5' |
H5'A |
H5' |
120.0 |
120.0 |
| HOP1 |
OP1 |
P |
OP3 |
124.4 |
300.0 |