Atom Nomenclature for 18P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 18P

Atom Name (V3) Atom Name (V2)
C C
N N
O O
CL CL
C01 C01
N01 N01
O01 O01
C02 C02
N02 N02
C03 C03
N03 N03
C04 C04
N04 N04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
H H
H01 H01
H01A H01A
H01B H01B
H02 H02
H02A H02A
HN02 HN02
HN0A HN0A
HN04 HN04
H05 H05
H05A H05A
H05B H05B
H08 H08
H09 H09
H10 H10
H12 H12
H15 H15
H16 H16