PDB Chemical Component 18O
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 18O
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O5 |
1.451 |
1.429 |
| C1 |
N1 |
1.468 |
1.465 |
| N1 |
C7 |
1.335 |
1.347 |
| C2 |
C1 |
1.538 |
1.531 |
| N2 |
N3 |
1.227 |
1.401 |
| O2 |
C2 |
1.434 |
1.429 |
| C3 |
C2 |
1.546 |
1.532 |
| C3 |
C4 |
1.540 |
1.532 |
| N3 |
C8 |
1.322 |
1.297 |
| O3 |
C3 |
1.432 |
1.429 |
| C4 |
C5 |
1.548 |
1.531 |
| O8 |
N4 |
1.360 |
1.218 |
| N4 |
O7 |
1.422 |
1.218 |
| O4 |
C4 |
1.425 |
1.429 |
| C5 |
C6 |
1.532 |
1.529 |
| C5 |
O5 |
1.436 |
1.429 |
| O6 |
C6 |
1.434 |
1.429 |
| C7 |
S1 |
1.768 |
1.712 |
| C7 |
N2 |
1.331 |
1.348 |
| C8 |
C9 |
1.388 |
1.476 |
| C9 |
C14 |
1.395 |
1.397 |
| C9 |
C10 |
1.396 |
1.396 |
| C10 |
C11 |
1.395 |
1.380 |
| C11 |
C12 |
1.396 |
1.384 |
| C12 |
N4 |
1.337 |
1.480 |
| C13 |
C12 |
1.396 |
1.383 |
| C14 |
C13 |
1.394 |
1.380 |
| C1 |
H1 |
1.100 |
1.089 |
| N1 |
HN1 |
1.000 |
0.970 |
| C2 |
H2 |
1.100 |
1.090 |
| N2 |
HN2 |
1.000 |
0.970 |
| O2 |
HO2 |
0.950 |
0.967 |
| C3 |
H3 |
1.100 |
1.090 |
| O3 |
HO3 |
0.949 |
0.967 |
| C4 |
H4 |
1.101 |
1.090 |
| O4 |
HO4 |
0.950 |
0.967 |
| C5 |
H5 |
1.100 |
1.091 |
| C6 |
H61 |
1.099 |
1.090 |
| C6 |
H62 |
1.100 |
1.090 |
| O6 |
HO6 |
0.950 |
0.967 |
| C8 |
H8 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
H14 |
1.080 |
1.080 |
Bond Angles for 18O
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
O5 |
105.2 |
109.5 |
| C2 |
C1 |
O5 |
109.8 |
109.4 |
| C1 |
O5 |
C5 |
111.1 |
114.1 |
| O5 |
C1 |
H1 |
113.3 |
109.5 |
| C1 |
N1 |
C7 |
122.2 |
120.0 |
| N1 |
C1 |
H1 |
110.3 |
109.5 |
| C1 |
N1 |
HN1 |
118.9 |
120.0 |
| N1 |
C7 |
S1 |
122.3 |
120.0 |
| N1 |
C7 |
N2 |
115.0 |
120.0 |
| C7 |
N1 |
HN1 |
118.9 |
120.1 |
| C2 |
C1 |
H1 |
105.7 |
109.5 |
| N2 |
N3 |
C8 |
115.8 |
120.0 |
| N3 |
N2 |
HN2 |
117.5 |
120.0 |
| O2 |
C2 |
H2 |
107.9 |
109.5 |
| C3 |
C2 |
H2 |
108.1 |
109.5 |
| O3 |
C3 |
C4 |
109.7 |
109.5 |
| C3 |
C4 |
C5 |
111.6 |
109.2 |
| C4 |
C3 |
H3 |
109.0 |
109.5 |
| C3 |
C4 |
H4 |
107.6 |
109.5 |
| N3 |
C8 |
C9 |
122.2 |
120.0 |
| N3 |
C8 |
H8 |
118.9 |
120.0 |
| O3 |
C3 |
H3 |
108.8 |
109.6 |
| O4 |
C4 |
C5 |
109.4 |
109.5 |
| C4 |
C5 |
C6 |
112.9 |
109.5 |
| C4 |
C5 |
O5 |
109.6 |
109.4 |
| C5 |
C4 |
H4 |
108.3 |
109.5 |
| C4 |
C5 |
H5 |
106.4 |
109.5 |
| O4 |
C4 |
H4 |
109.8 |
109.6 |
| O5 |
C5 |
C6 |
107.2 |
109.5 |
| C6 |
C5 |
H5 |
108.8 |
109.4 |
| C5 |
C6 |
H61 |
109.7 |
109.5 |
| C5 |
C6 |
H62 |
109.7 |
109.5 |
| O5 |
C5 |
H5 |
112.1 |
109.5 |
| O6 |
C6 |
H61 |
109.8 |
109.4 |
| O6 |
C6 |
H62 |
109.7 |
109.5 |
| C7 |
N2 |
HN2 |
117.5 |
120.0 |
| C8 |
C9 |
C14 |
118.9 |
120.1 |
| C8 |
C9 |
C10 |
120.8 |
120.2 |
| C9 |
C8 |
H8 |
118.9 |
120.0 |
| C10 |
C9 |
C14 |
120.3 |
119.7 |
| C9 |
C14 |
C13 |
119.9 |
119.8 |
| C9 |
C14 |
H14 |
120.0 |
120.1 |
| C9 |
C10 |
C11 |
119.6 |
119.9 |
| C9 |
C10 |
H10 |
120.2 |
120.1 |
| C10 |
C11 |
C12 |
120.3 |
120.1 |
| C11 |
C10 |
H10 |
120.2 |
120.1 |
| C10 |
C11 |
H11 |
119.8 |
119.9 |
| C12 |
C11 |
H11 |
119.8 |
119.9 |
| C14 |
C13 |
H13 |
120.0 |
119.9 |
| H61 |
C6 |
H62 |
109.2 |
109.4 |
Torsion Angles for 18O
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
C1 |
N1 |
C7 |
257.8 |
265.0 |
| N1 |
C1 |
O5 |
H1 |
120.5 |
120.0 |
| O5 |
C1 |
N1 |
HN1 |
77.8 |
85.0 |
| C2 |
C1 |
O5 |
H1 |
242.1 |
240.0 |
| C4 |
C5 |
O5 |
C1 |
63.6 |
61.2 |
| C1 |
O5 |
C5 |
C6 |
186.3 |
181.2 |
| C1 |
O5 |
C5 |
H5 |
305.6 |
301.2 |
| C2 |
C1 |
N1 |
O5 |
240.4 |
240.1 |
| N1 |
C1 |
O5 |
C5 |
172.4 |
178.9 |
| O5 |
C1 |
N1 |
H1 |
237.5 |
240.0 |
| C1 |
N1 |
C7 |
S1 |
358.8 |
360.0 |
| C1 |
N1 |
C7 |
N2 |
179.4 |
180.0 |
| C7 |
N1 |
C1 |
HN1 |
180.0 |
180.0 |
| C2 |
C1 |
N1 |
H1 |
118.0 |
120.1 |
| C7 |
N1 |
C1 |
O5 |
257.8 |
265.0 |
| C7 |
N1 |
C1 |
H1 |
20.2 |
25.0 |
| C1 |
N1 |
C7 |
HN1 |
180.0 |
180.0 |
| N1 |
C7 |
N2 |
HN2 |
359.5 |
180.0 |
| N1 |
C1 |
C2 |
O5 |
116.9 |
120.0 |
| C2 |
C1 |
O5 |
C5 |
293.9 |
298.8 |
| O5 |
C1 |
C2 |
H1 |
122.5 |
120.0 |
| C2 |
C1 |
N1 |
C7 |
138.2 |
145.1 |
| N1 |
C1 |
C2 |
H1 |
239.4 |
239.9 |
| C2 |
C1 |
N1 |
HN1 |
318.2 |
325.1 |
| N1 |
C7 |
N2 |
N3 |
179.5 |
360.0 |
| N2 |
N3 |
C8 |
C9 |
179.5 |
180.0 |
| N2 |
N3 |
C8 |
H8 |
359.5 |
0.1 |
| C7 |
N2 |
N3 |
HN2 |
180.0 |
180.0 |
| O2 |
C2 |
C1 |
O5 |
181.3 |
177.6 |
| O2 |
C2 |
C1 |
H1 |
58.8 |
57.6 |
| C3 |
C2 |
O2 |
H2 |
241.5 |
239.9 |
| C3 |
C2 |
C1 |
O5 |
58.4 |
57.6 |
| C3 |
C2 |
C1 |
H1 |
295.9 |
297.6 |
| O2 |
C2 |
C3 |
H2 |
118.4 |
120.1 |
| C4 |
C3 |
C2 |
H2 |
68.9 |
62.9 |
| O3 |
C3 |
C4 |
H3 |
241.0 |
239.7 |
| O4 |
C4 |
C3 |
C5 |
121.7 |
119.9 |
| C3 |
C4 |
C5 |
C6 |
185.5 |
182.4 |
| C3 |
C4 |
C5 |
O5 |
304.9 |
302.4 |
| C5 |
C4 |
C3 |
H4 |
118.6 |
119.9 |
| C3 |
C4 |
C5 |
H5 |
66.3 |
62.4 |
| O4 |
C4 |
C3 |
H4 |
240.4 |
239.8 |
| C8 |
N3 |
N2 |
HN2 |
359.5 |
360.0 |
| N3 |
C8 |
C9 |
C14 |
203.7 |
180.0 |
| N3 |
C8 |
C9 |
C10 |
23.7 |
0.3 |
| C9 |
C8 |
N3 |
H8 |
180.0 |
179.9 |
| O3 |
C3 |
C2 |
H2 |
307.0 |
303.1 |
| O3 |
C3 |
C4 |
C5 |
172.2 |
176.8 |
| C4 |
C3 |
O3 |
H3 |
119.1 |
120.2 |
| O3 |
C3 |
C4 |
H4 |
53.5 |
56.9 |
| C1 |
O5 |
C5 |
C4 |
63.6 |
61.2 |
| C5 |
C4 |
C3 |
H3 |
291.1 |
297.1 |
| C3 |
C4 |
C5 |
H4 |
241.8 |
240.1 |
| O4 |
C4 |
C5 |
H4 |
119.7 |
120.2 |
| O5 |
C5 |
C4 |
C6 |
119.3 |
120.0 |
| C6 |
C5 |
C4 |
H5 |
119.2 |
120.0 |
| C4 |
C5 |
C6 |
H61 |
169.7 |
305.0 |
| C4 |
C5 |
C6 |
H62 |
289.7 |
65.0 |
| O5 |
C5 |
C4 |
H5 |
238.6 |
240.0 |
| C3 |
C4 |
O4 |
C5 |
237.0 |
240.3 |
| O4 |
C4 |
C3 |
H3 |
52.9 |
57.0 |
| C3 |
C4 |
O4 |
H4 |
118.3 |
120.1 |
| O4 |
C4 |
C5 |
C6 |
63.4 |
62.5 |
| O4 |
C4 |
C5 |
O5 |
182.8 |
182.5 |
| C5 |
C4 |
O4 |
H4 |
241.3 |
239.8 |
| O4 |
C4 |
C5 |
H5 |
304.2 |
302.5 |
| C4 |
C5 |
C6 |
O5 |
120.7 |
120.0 |
| C6 |
C5 |
C4 |
H4 |
303.8 |
302.3 |
| C4 |
C5 |
C6 |
H5 |
242.2 |
240.0 |
| O5 |
C5 |
C6 |
H5 |
121.4 |
120.0 |
| O6 |
C6 |
C5 |
H61 |
240.0 |
240.0 |
| O6 |
C6 |
C5 |
H62 |
120.0 |
120.0 |
| H61 |
C6 |
C5 |
H62 |
240.0 |
240.0 |
| C5 |
O5 |
C1 |
H1 |
51.8 |
58.8 |
| C4 |
C5 |
O5 |
C6 |
237.2 |
240.0 |
| O5 |
C5 |
C4 |
H4 |
63.1 |
62.3 |
| C4 |
C5 |
O5 |
H5 |
117.9 |
120.0 |
| C6 |
C5 |
O5 |
H5 |
240.7 |
240.0 |
| O5 |
C5 |
C6 |
H61 |
49.0 |
185.0 |
| O5 |
C5 |
C6 |
H62 |
169.0 |
305.0 |
| O6 |
C6 |
C5 |
H5 |
167.6 |
305.1 |
| C5 |
C6 |
O6 |
H61 |
120.0 |
120.0 |
| C5 |
C6 |
O6 |
H62 |
240.0 |
239.9 |
| H61 |
C6 |
O6 |
H62 |
120.0 |
119.9 |
| N1 |
C7 |
S1 |
N2 |
180.7 |
180.0 |
| S1 |
C7 |
N1 |
HN1 |
178.8 |
180.0 |
| N1 |
C7 |
N2 |
S1 |
179.4 |
180.0 |
| N2 |
C7 |
N1 |
HN1 |
359.5 |
0.0 |
| C7 |
N2 |
N3 |
C8 |
179.5 |
180.0 |
| N3 |
N2 |
C7 |
HN2 |
180.0 |
180.0 |
| N3 |
C8 |
C9 |
H8 |
180.0 |
180.1 |
| C10 |
C9 |
C8 |
C14 |
180.0 |
180.3 |
| C8 |
C9 |
C14 |
C13 |
179.9 |
179.7 |
| C8 |
C9 |
C14 |
H14 |
359.9 |
0.0 |
| C8 |
C9 |
C10 |
C11 |
180.1 |
180.0 |
| C8 |
C9 |
C10 |
H10 |
0.1 |
359.9 |
| C8 |
C9 |
C14 |
C10 |
180.0 |
180.3 |
| C14 |
C9 |
C8 |
H8 |
23.7 |
360.0 |
| C14 |
C9 |
C10 |
C11 |
0.1 |
0.3 |
| C14 |
C9 |
C10 |
H10 |
180.1 |
180.2 |
| C9 |
C14 |
C13 |
H13 |
180.1 |
180.3 |
| C8 |
C9 |
C10 |
C14 |
180.0 |
179.7 |
| C10 |
C9 |
C8 |
H8 |
203.7 |
180.2 |
| C10 |
C9 |
C14 |
C13 |
359.9 |
359.4 |
| C10 |
C9 |
C14 |
H14 |
179.9 |
179.7 |
| C9 |
C10 |
C11 |
C12 |
0.0 |
0.0 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.1 |
| C9 |
C10 |
C11 |
H11 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
C14 |
0.1 |
0.3 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
179.9 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
180.0 |
180.1 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C9 |
C14 |
C13 |
C12 |
0.1 |
0.6 |
| C13 |
C12 |
C11 |
H11 |
179.9 |
180.0 |
| C9 |
C14 |
C13 |
H14 |
180.0 |
180.3 |
| N1 |
C1 |
H1 |
O5 |
242.4 |
240.0 |
| C2 |
C1 |
H1 |
O5 |
120.2 |
119.9 |
| H1 |
C1 |
O5 |
C5 |
51.8 |
58.8 |
| H1 |
C1 |
N1 |
C7 |
20.2 |
25.0 |
| H1 |
C1 |
N1 |
HN1 |
200.2 |
205.0 |
| HN1 |
N1 |
C1 |
O5 |
77.8 |
85.0 |
| C1 |
N1 |
HN1 |
C7 |
180.0 |
180.0 |
| HN1 |
N1 |
C1 |
H1 |
200.2 |
205.0 |
| HN1 |
N1 |
C7 |
S1 |
178.8 |
180.0 |
| HN1 |
N1 |
C7 |
N2 |
359.5 |
0.0 |
| H2 |
C2 |
C1 |
O5 |
299.8 |
297.7 |
| H2 |
C2 |
C1 |
H1 |
177.3 |
177.7 |
| HN2 |
N2 |
N3 |
C8 |
359.5 |
360.0 |
| HO2 |
O2 |
C2 |
H2 |
60.4 |
299.8 |
| H3 |
C3 |
C2 |
H2 |
188.0 |
182.8 |
| O3 |
C3 |
H3 |
C4 |
119.5 |
120.2 |
| H3 |
C3 |
C4 |
C5 |
291.1 |
297.1 |
| H3 |
C3 |
C4 |
H4 |
172.5 |
177.2 |
| HO3 |
O3 |
C3 |
C4 |
57.5 |
180.4 |
| HO3 |
O3 |
C3 |
H3 |
298.3 |
60.2 |
| C3 |
C4 |
H4 |
C5 |
120.7 |
119.7 |
| H4 |
C4 |
C3 |
H3 |
172.5 |
177.2 |
| O4 |
C4 |
H4 |
C5 |
240.6 |
239.8 |
| H4 |
C4 |
C5 |
C6 |
303.8 |
302.3 |
| H4 |
C4 |
C5 |
O5 |
63.1 |
62.3 |
| H4 |
C4 |
C5 |
H5 |
184.6 |
182.3 |
| HO4 |
O4 |
C4 |
C5 |
303.0 |
179.7 |
| HO4 |
O4 |
C4 |
H4 |
61.7 |
299.9 |
| C4 |
C5 |
H5 |
C6 |
121.9 |
120.0 |
| C4 |
C5 |
H5 |
O5 |
240.2 |
240.1 |
| H5 |
C5 |
C4 |
H4 |
184.6 |
182.3 |
| O5 |
C5 |
H5 |
C6 |
241.6 |
240.0 |
| H5 |
C5 |
C6 |
H61 |
287.6 |
65.0 |
| H5 |
C5 |
C6 |
H62 |
47.6 |
185.0 |
| H61 |
C6 |
C5 |
H5 |
287.6 |
65.0 |
| C5 |
C6 |
H61 |
H62 |
120.3 |
120.0 |
| O6 |
C6 |
H61 |
H62 |
239.7 |
240.1 |
| H62 |
C6 |
C5 |
H5 |
47.6 |
185.0 |
| C5 |
C6 |
H62 |
H61 |
239.7 |
240.0 |
| O6 |
C6 |
H62 |
H61 |
120.3 |
119.9 |
| HO6 |
O6 |
C6 |
H61 |
60.0 |
60.0 |
| HO6 |
O6 |
C6 |
H62 |
300.0 |
300.1 |
| N3 |
C8 |
H8 |
C9 |
180.0 |
179.9 |
| H8 |
C8 |
C9 |
C14 |
23.7 |
360.0 |
| H8 |
C8 |
C9 |
C10 |
203.7 |
180.2 |
| H10 |
C10 |
C9 |
C14 |
180.1 |
180.2 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.1 |
| H10 |
C10 |
C11 |
C12 |
180.0 |
180.1 |
| H10 |
C10 |
C11 |
H11 |
0.0 |
0.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C10 |
H10 |
0.0 |
0.0 |
| C9 |
C14 |
H14 |
C13 |
180.0 |
179.7 |
| H14 |
C14 |
C13 |
H13 |
0.1 |
360.0 |