PDB Chemical Component 18M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 18M
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP2 |
P |
1.515 |
1.480 |
O5' |
P |
1.607 |
1.609 |
P |
OP3 |
1.595 |
1.610 |
P |
OP1 |
1.510 |
1.611 |
O5' |
C5' |
1.416 |
1.430 |
C4' |
C5' |
1.522 |
1.530 |
C5' |
H5' |
1.100 |
1.089 |
C5' |
H5'A |
1.100 |
1.091 |
C3' |
C4' |
1.523 |
1.550 |
O4' |
C4' |
1.428 |
1.444 |
C4' |
H4' |
1.100 |
1.090 |
C1' |
O4' |
1.430 |
1.437 |
C2' |
C3' |
1.519 |
1.548 |
C3' |
O3' |
1.435 |
1.429 |
C3' |
H3' |
1.100 |
1.089 |
O3' |
P1 |
1.603 |
1.610 |
O2' |
C2' |
1.446 |
1.429 |
C2' |
C1' |
1.528 |
1.545 |
C2' |
H2' |
1.100 |
1.090 |
O2' |
CM2 |
1.439 |
1.429 |
N9 |
C1' |
1.485 |
1.465 |
C1' |
H1' |
1.100 |
1.090 |
C8 |
N9 |
1.348 |
1.364 |
C4 |
N9 |
1.331 |
1.361 |
N7 |
C8 |
1.355 |
1.303 |
C8 |
H8 |
1.080 |
1.080 |
N7 |
C5 |
1.340 |
1.353 |
C6 |
C5 |
1.480 |
1.466 |
C5 |
C4 |
1.467 |
1.389 |
O6 |
C6 |
1.255 |
1.221 |
C6 |
N1 |
1.339 |
1.342 |
N1 |
C2 |
1.344 |
1.316 |
C2 |
N3 |
1.361 |
1.359 |
C2 |
N2 |
1.356 |
1.368 |
N2 |
HN2 |
1.000 |
0.970 |
N2 |
HN2A |
1.000 |
0.971 |
C4 |
N3 |
1.350 |
1.371 |
N3 |
HN3 |
1.000 |
0.970 |
O12 |
P1 |
1.595 |
1.480 |
P1 |
O13 |
1.493 |
1.610 |
P1 |
O11 |
1.488 |
1.609 |
O11 |
HO11 |
0.950 |
0.967 |
O13 |
HO13 |
0.950 |
0.968 |
CM2 |
HM2 |
1.100 |
1.089 |
CM2 |
HM2A |
1.100 |
1.090 |
CM2 |
HM2B |
1.100 |
1.091 |
OP1 |
HOP1 |
0.950 |
0.966 |
OP3 |
HOP3 |
0.950 |
0.966 |
Bond Angles for 18M
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP3 |
108.0 |
109.5 |
O5' |
P |
OP3 |
101.7 |
109.5 |
O5' |
P |
OP1 |
108.3 |
109.5 |
OP1 |
P |
OP3 |
107.8 |
109.4 |
P |
OP3 |
HOP3 |
109.5 |
114.0 |
P |
OP1 |
HOP1 |
109.5 |
114.0 |
O5' |
C5' |
H5' |
109.4 |
109.5 |
O5' |
C5' |
H5'A |
109.4 |
109.5 |
C4' |
C5' |
H5' |
109.3 |
109.5 |
C4' |
C5' |
H5'A |
109.4 |
109.4 |
H5' |
C5' |
H5'A |
109.4 |
109.5 |
C3' |
C4' |
H4' |
108.1 |
110.6 |
O4' |
C4' |
H4' |
109.4 |
110.6 |
C2' |
C3' |
H3' |
111.6 |
110.9 |
O3' |
C3' |
H3' |
112.9 |
110.9 |
C3' |
O3' |
P1 |
124.4 |
122.9 |
O3' |
P1 |
O13 |
108.8 |
109.4 |
O3' |
P1 |
O11 |
107.4 |
109.5 |
O2' |
C2' |
C1' |
116.6 |
110.4 |
O2' |
C2' |
H2' |
109.6 |
110.6 |
C1' |
C2' |
H2' |
108.5 |
110.5 |
C2' |
C1' |
H1' |
108.1 |
109.8 |
O2' |
CM2 |
HM2 |
109.5 |
109.5 |
O2' |
CM2 |
HM2A |
109.5 |
109.5 |
O2' |
CM2 |
HM2B |
109.5 |
109.5 |
N9 |
C1' |
H1' |
108.6 |
110.0 |
N7 |
C8 |
H8 |
124.6 |
125.2 |
N7 |
C5 |
C4 |
106.8 |
107.4 |
C6 |
C5 |
C4 |
117.2 |
118.1 |
C5 |
C4 |
N3 |
119.1 |
118.9 |
O6 |
C6 |
N1 |
120.3 |
120.7 |
C6 |
N1 |
C2 |
122.9 |
121.4 |
N1 |
C2 |
N3 |
122.5 |
122.5 |
N1 |
C2 |
N2 |
116.9 |
118.7 |
N2 |
C2 |
N3 |
120.6 |
118.8 |
C2 |
N3 |
HN3 |
119.6 |
119.7 |
C2 |
N2 |
HN2 |
120.0 |
120.1 |
C2 |
N2 |
HN2A |
120.0 |
120.0 |
HN2 |
N2 |
HN2A |
120.0 |
119.9 |
C4 |
N3 |
HN3 |
119.7 |
119.8 |
O12 |
P1 |
O13 |
109.7 |
109.4 |
O11 |
P1 |
O13 |
119.6 |
109.5 |
P1 |
O13 |
HO13 |
109.5 |
114.0 |
P1 |
O11 |
HO11 |
109.5 |
114.0 |
HM2 |
CM2 |
HM2A |
109.4 |
109.5 |
HM2 |
CM2 |
HM2B |
109.5 |
109.5 |
HM2A |
CM2 |
HM2B |
109.5 |
109.4 |
Torsion Angles for 18M
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5' |
P |
OP2 |
OP3 |
110.2 |
120.1 |
OP1 |
P |
OP2 |
OP3 |
236.4 |
240.0 |
OP2 |
P |
OP3 |
HOP3 |
0.0 |
180.0 |
OP2 |
P |
OP1 |
HOP1 |
360.0 |
60.0 |
OP2 |
P |
O5' |
OP3 |
245.6 |
240.0 |
OP1 |
P |
O5' |
OP3 |
113.4 |
120.0 |
O5' |
P |
OP3 |
HOP3 |
244.1 |
60.0 |
O5' |
P |
OP1 |
HOP1 |
127.0 |
180.0 |
O5' |
P |
OP3 |
OP1 |
113.7 |
120.0 |
OP3 |
P |
OP1 |
HOP1 |
236.3 |
300.0 |
OP2 |
P |
OP1 |
OP3 |
123.7 |
120.0 |
O5' |
P |
OP1 |
OP3 |
250.7 |
240.0 |
OP1 |
P |
OP3 |
HOP3 |
130.4 |
300.0 |
C5' |
O5' |
P |
OP3 |
275.7 |
65.0 |
C5' |
O5' |
P |
OP1 |
29.0 |
185.0 |
C4' |
C5' |
O5' |
H5' |
239.9 |
240.0 |
C4' |
C5' |
O5' |
H5'A |
120.1 |
119.9 |
H5' |
C5' |
O5' |
H5'A |
240.1 |
240.0 |
O5' |
C5' |
C4' |
H5' |
120.1 |
120.0 |
O5' |
C5' |
C4' |
H5'A |
239.9 |
240.1 |
H5' |
C5' |
C4' |
H5'A |
119.8 |
120.0 |
O5' |
C5' |
H5' |
H5'A |
119.8 |
120.0 |
C4' |
C5' |
H5' |
H5'A |
240.2 |
240.0 |
O5' |
C5' |
H5'A |
H5' |
240.2 |
240.0 |
C4' |
C5' |
H5'A |
H5' |
119.8 |
120.0 |
C3' |
C4' |
C5' |
H5' |
305.8 |
62.8 |
C3' |
C4' |
C5' |
H5'A |
186.0 |
302.8 |
O4' |
C4' |
C3' |
H4' |
242.4 |
241.4 |
O4' |
C4' |
C5' |
H5' |
185.8 |
308.6 |
O4' |
C4' |
C5' |
H5'A |
66.0 |
188.6 |
C3' |
C4' |
O4' |
H4' |
116.7 |
118.6 |
H4' |
C4' |
C5' |
H5' |
65.9 |
185.7 |
H4' |
C4' |
C5' |
H5'A |
306.0 |
65.7 |
C1' |
O4' |
C4' |
H4' |
259.8 |
281.4 |
C2' |
C3' |
C4' |
H4' |
126.3 |
81.6 |
O3' |
C3' |
C2' |
H3' |
235.6 |
236.4 |
C2' |
C3' |
O3' |
P1 |
157.8 |
125.8 |
O3' |
C3' |
C4' |
H4' |
11.9 |
323.5 |
C2' |
C3' |
O3' |
H3' |
123.6 |
123.7 |
C3' |
O3' |
P1 |
O13 |
343.0 |
175.0 |
C3' |
O3' |
P1 |
O11 |
113.8 |
295.0 |
H3' |
C3' |
C4' |
H4' |
247.2 |
199.8 |
H3' |
C3' |
O3' |
P1 |
34.2 |
2.2 |
P1 |
O3' |
C3' |
H3' |
34.2 |
2.2 |
O12 |
P1 |
O3' |
O13 |
244.5 |
240.1 |
O11 |
P1 |
O3' |
O13 |
130.8 |
120.0 |
O3' |
P1 |
O13 |
HO13 |
250.1 |
180.0 |
O3' |
P1 |
O11 |
HO11 |
108.7 |
300.0 |
O2' |
C2' |
C3' |
H3' |
86.1 |
144.0 |
C1' |
C2' |
O2' |
H2' |
123.8 |
122.7 |
O2' |
C2' |
C1' |
H1' |
43.9 |
1.2 |
C1' |
C2' |
C3' |
H3' |
210.9 |
262.6 |
O2' |
C2' |
C1' |
H2' |
235.7 |
237.3 |
N9 |
C1' |
C2' |
H1' |
237.7 |
238.9 |
H2' |
C2' |
C3' |
H3' |
325.0 |
21.3 |
O2' |
C2' |
H2' |
C1' |
128.4 |
122.6 |
H2' |
C2' |
C1' |
H1' |
168.2 |
123.9 |
CM2 |
O2' |
C2' |
C1' |
334.6 |
95.3 |
CM2 |
O2' |
C2' |
H2' |
210.8 |
332.6 |
HM2 |
CM2 |
O2' |
HM2A |
240.0 |
240.0 |
HM2 |
CM2 |
O2' |
HM2B |
120.0 |
120.0 |
HM2A |
CM2 |
O2' |
HM2B |
240.0 |
240.0 |
N9 |
C1' |
C2' |
H2' |
46.0 |
2.8 |
C2' |
C1' |
N9 |
H1' |
122.0 |
121.0 |
H1' |
C1' |
C2' |
H2' |
168.2 |
123.9 |
C8 |
N9 |
C1' |
H1' |
194.7 |
144.0 |
C4 |
N9 |
C1' |
H1' |
16.4 |
323.7 |
C5 |
N7 |
C8 |
H8 |
180.6 |
180.0 |
C6 |
C5 |
N7 |
C4 |
179.8 |
180.3 |
N7 |
C5 |
C4 |
N3 |
179.9 |
179.7 |
N7 |
C5 |
C6 |
C4 |
180.2 |
179.7 |
C6 |
C5 |
C4 |
N3 |
0.0 |
359.5 |
C5 |
C4 |
N3 |
HN3 |
180.2 |
180.3 |
O6 |
C6 |
C5 |
C4 |
179.8 |
180.2 |
O6 |
C6 |
N1 |
C2 |
180.5 |
180.0 |
N1 |
C6 |
C5 |
C4 |
359.6 |
0.3 |
C6 |
N1 |
C2 |
N3 |
359.5 |
0.0 |
C6 |
N1 |
C2 |
N2 |
179.6 |
180.0 |
N2 |
C2 |
N1 |
N3 |
180.1 |
180.0 |
N1 |
C2 |
N3 |
HN3 |
180.0 |
180.0 |
N1 |
C2 |
N2 |
HN2 |
360.0 |
0.0 |
N1 |
C2 |
N2 |
HN2A |
180.0 |
180.0 |
C5 |
C4 |
N3 |
C2 |
0.2 |
0.5 |
N1 |
C2 |
N3 |
N2 |
180.1 |
180.0 |
N3 |
C2 |
N2 |
HN2 |
180.1 |
180.0 |
N3 |
C2 |
N2 |
HN2A |
0.1 |
0.0 |
C4 |
N3 |
C2 |
HN3 |
180.0 |
179.8 |
N1 |
C2 |
N2 |
N3 |
179.9 |
180.0 |
N2 |
C2 |
N3 |
HN3 |
359.9 |
360.0 |
HN2 |
N2 |
C2 |
HN2A |
180.0 |
180.0 |
HN2 |
N2 |
C2 |
N3 |
180.1 |
180.0 |
C2 |
N2 |
HN2 |
HN2A |
180.0 |
180.0 |
HN2A |
N2 |
C2 |
N3 |
0.1 |
0.0 |
C2 |
N2 |
HN2A |
HN2 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
HN3 |
180.0 |
180.2 |
O3' |
P1 |
O12 |
O13 |
114.8 |
119.9 |
O11 |
P1 |
O12 |
O13 |
227.7 |
240.0 |
O12 |
P1 |
O13 |
HO13 |
360.0 |
300.0 |
O12 |
P1 |
O11 |
HO11 |
360.0 |
180.0 |
O3' |
P1 |
O13 |
O11 |
123.9 |
120.0 |
O13 |
P1 |
O11 |
HO11 |
233.2 |
60.0 |
O3' |
P1 |
O11 |
O13 |
235.5 |
240.0 |
O12 |
P1 |
O11 |
O13 |
126.8 |
120.0 |
O11 |
P1 |
O13 |
HO13 |
126.2 |
60.0 |
HO11 |
O11 |
P1 |
O13 |
233.2 |
60.0 |
O2' |
CM2 |
HM2 |
HM2A |
120.0 |
120.0 |
O2' |
CM2 |
HM2 |
HM2B |
240.0 |
240.0 |
HM2A |
CM2 |
HM2 |
HM2B |
120.0 |
120.0 |
O2' |
CM2 |
HM2A |
HM2 |
240.0 |
240.0 |
O2' |
CM2 |
HM2A |
HM2B |
120.0 |
120.0 |
HM2 |
CM2 |
HM2A |
HM2B |
240.0 |
240.0 |
O2' |
CM2 |
HM2B |
HM2 |
120.0 |
120.0 |
O2' |
CM2 |
HM2B |
HM2A |
240.0 |
240.0 |
HM2 |
CM2 |
HM2B |
HM2A |
120.0 |
120.0 |
HOP1 |
OP1 |
P |
OP3 |
236.3 |
300.0 |