PDB Chemical Component 18M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 18M

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP2 P 1.515 1.480
O5' P 1.607 1.609
P OP3 1.595 1.610
P OP1 1.510 1.611
O5' C5' 1.416 1.430
C4' C5' 1.522 1.530
C5' H5' 1.100 1.089
C5' H5'A 1.100 1.091
C3' C4' 1.523 1.550
O4' C4' 1.428 1.444
C4' H4' 1.100 1.090
C1' O4' 1.430 1.437
C2' C3' 1.519 1.548
C3' O3' 1.435 1.429
C3' H3' 1.100 1.089
O3' P1 1.603 1.610
O2' C2' 1.446 1.429
C2' C1' 1.528 1.545
C2' H2' 1.100 1.090
O2' CM2 1.439 1.429
N9 C1' 1.485 1.465
C1' H1' 1.100 1.090
C8 N9 1.348 1.364
C4 N9 1.331 1.361
N7 C8 1.355 1.303
C8 H8 1.080 1.080
N7 C5 1.340 1.353
C6 C5 1.480 1.466
C5 C4 1.467 1.389
O6 C6 1.255 1.221
C6 N1 1.339 1.342
N1 C2 1.344 1.316
C2 N3 1.361 1.359
C2 N2 1.356 1.368
N2 HN2 1.000 0.970
N2 HN2A 1.000 0.971
C4 N3 1.350 1.371
N3 HN3 1.000 0.970
O12 P1 1.595 1.480
P1 O13 1.493 1.610
P1 O11 1.488 1.609
O11 HO11 0.950 0.967
O13 HO13 0.950 0.968
CM2 HM2 1.100 1.089
CM2 HM2A 1.100 1.090
CM2 HM2B 1.100 1.091
OP1 HOP1 0.950 0.966
OP3 HOP3 0.950 0.966

Bond Angles for 18M

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3 108.0 109.5
O5' P OP3 101.7 109.5
O5' P OP1 108.3 109.5
OP1 P OP3 107.8 109.4
P OP3 HOP3 109.5 114.0
P OP1 HOP1 109.5 114.0
O5' C5' H5' 109.4 109.5
O5' C5' H5'A 109.4 109.5
C4' C5' H5' 109.3 109.5
C4' C5' H5'A 109.4 109.4
H5' C5' H5'A 109.4 109.5
C3' C4' H4' 108.1 110.6
O4' C4' H4' 109.4 110.6
C2' C3' H3' 111.6 110.9
O3' C3' H3' 112.9 110.9
C3' O3' P1 124.4 122.9
O3' P1 O13 108.8 109.4
O3' P1 O11 107.4 109.5
O2' C2' C1' 116.6 110.4
O2' C2' H2' 109.6 110.6
C1' C2' H2' 108.5 110.5
C2' C1' H1' 108.1 109.8
O2' CM2 HM2 109.5 109.5
O2' CM2 HM2A 109.5 109.5
O2' CM2 HM2B 109.5 109.5
N9 C1' H1' 108.6 110.0
N7 C8 H8 124.6 125.2
N7 C5 C4 106.8 107.4
C6 C5 C4 117.2 118.1
C5 C4 N3 119.1 118.9
O6 C6 N1 120.3 120.7
C6 N1 C2 122.9 121.4
N1 C2 N3 122.5 122.5
N1 C2 N2 116.9 118.7
N2 C2 N3 120.6 118.8
C2 N3 HN3 119.6 119.7
C2 N2 HN2 120.0 120.1
C2 N2 HN2A 120.0 120.0
HN2 N2 HN2A 120.0 119.9
C4 N3 HN3 119.7 119.8
O12 P1 O13 109.7 109.4
O11 P1 O13 119.6 109.5
P1 O13 HO13 109.5 114.0
P1 O11 HO11 109.5 114.0
HM2 CM2 HM2A 109.4 109.5
HM2 CM2 HM2B 109.5 109.5
HM2A CM2 HM2B 109.5 109.4

Torsion Angles for 18M

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5' P OP2 OP3 110.2 120.1
OP1 P OP2 OP3 236.4 240.0
OP2 P OP3 HOP3 0.0 180.0
OP2 P OP1 HOP1 360.0 60.0
OP2 P O5' OP3 245.6 240.0
OP1 P O5' OP3 113.4 120.0
O5' P OP3 HOP3 244.1 60.0
O5' P OP1 HOP1 127.0 180.0
O5' P OP3 OP1 113.7 120.0
OP3 P OP1 HOP1 236.3 300.0
OP2 P OP1 OP3 123.7 120.0
O5' P OP1 OP3 250.7 240.0
OP1 P OP3 HOP3 130.4 300.0
C5' O5' P OP3 275.7 65.0
C5' O5' P OP1 29.0 185.0
C4' C5' O5' H5' 239.9 240.0
C4' C5' O5' H5'A 120.1 119.9
H5' C5' O5' H5'A 240.1 240.0
O5' C5' C4' H5' 120.1 120.0
O5' C5' C4' H5'A 239.9 240.1
H5' C5' C4' H5'A 119.8 120.0
O5' C5' H5' H5'A 119.8 120.0
C4' C5' H5' H5'A 240.2 240.0
O5' C5' H5'A H5' 240.2 240.0
C4' C5' H5'A H5' 119.8 120.0
C3' C4' C5' H5' 305.8 62.8
C3' C4' C5' H5'A 186.0 302.8
O4' C4' C3' H4' 242.4 241.4
O4' C4' C5' H5' 185.8 308.6
O4' C4' C5' H5'A 66.0 188.6
C3' C4' O4' H4' 116.7 118.6
H4' C4' C5' H5' 65.9 185.7
H4' C4' C5' H5'A 306.0 65.7
C1' O4' C4' H4' 259.8 281.4
C2' C3' C4' H4' 126.3 81.6
O3' C3' C2' H3' 235.6 236.4
C2' C3' O3' P1 157.8 125.8
O3' C3' C4' H4' 11.9 323.5
C2' C3' O3' H3' 123.6 123.7
C3' O3' P1 O13 343.0 175.0
C3' O3' P1 O11 113.8 295.0
H3' C3' C4' H4' 247.2 199.8
H3' C3' O3' P1 34.2 2.2
P1 O3' C3' H3' 34.2 2.2
O12 P1 O3' O13 244.5 240.1
O11 P1 O3' O13 130.8 120.0
O3' P1 O13 HO13 250.1 180.0
O3' P1 O11 HO11 108.7 300.0
O2' C2' C3' H3' 86.1 144.0
C1' C2' O2' H2' 123.8 122.7
O2' C2' C1' H1' 43.9 1.2
C1' C2' C3' H3' 210.9 262.6
O2' C2' C1' H2' 235.7 237.3
N9 C1' C2' H1' 237.7 238.9
H2' C2' C3' H3' 325.0 21.3
O2' C2' H2' C1' 128.4 122.6
H2' C2' C1' H1' 168.2 123.9
CM2 O2' C2' C1' 334.6 95.3
CM2 O2' C2' H2' 210.8 332.6
HM2 CM2 O2' HM2A 240.0 240.0
HM2 CM2 O2' HM2B 120.0 120.0
HM2A CM2 O2' HM2B 240.0 240.0
N9 C1' C2' H2' 46.0 2.8
C2' C1' N9 H1' 122.0 121.0
H1' C1' C2' H2' 168.2 123.9
C8 N9 C1' H1' 194.7 144.0
C4 N9 C1' H1' 16.4 323.7
C5 N7 C8 H8 180.6 180.0
C6 C5 N7 C4 179.8 180.3
N7 C5 C4 N3 179.9 179.7
N7 C5 C6 C4 180.2 179.7
C6 C5 C4 N3 0.0 359.5
C5 C4 N3 HN3 180.2 180.3
O6 C6 C5 C4 179.8 180.2
O6 C6 N1 C2 180.5 180.0
N1 C6 C5 C4 359.6 0.3
C6 N1 C2 N3 359.5 0.0
C6 N1 C2 N2 179.6 180.0
N2 C2 N1 N3 180.1 180.0
N1 C2 N3 HN3 180.0 180.0
N1 C2 N2 HN2 360.0 0.0
N1 C2 N2 HN2A 180.0 180.0
C5 C4 N3 C2 0.2 0.5
N1 C2 N3 N2 180.1 180.0
N3 C2 N2 HN2 180.1 180.0
N3 C2 N2 HN2A 0.1 0.0
C4 N3 C2 HN3 180.0 179.8
N1 C2 N2 N3 179.9 180.0
N2 C2 N3 HN3 359.9 360.0
HN2 N2 C2 HN2A 180.0 180.0
HN2 N2 C2 N3 180.1 180.0
C2 N2 HN2 HN2A 180.0 180.0
HN2A N2 C2 N3 0.1 0.0
C2 N2 HN2A HN2 180.0 180.0
C2 N3 C4 HN3 180.0 180.2
O3' P1 O12 O13 114.8 119.9
O11 P1 O12 O13 227.7 240.0
O12 P1 O13 HO13 360.0 300.0
O12 P1 O11 HO11 360.0 180.0
O3' P1 O13 O11 123.9 120.0
O13 P1 O11 HO11 233.2 60.0
O3' P1 O11 O13 235.5 240.0
O12 P1 O11 O13 126.8 120.0
O11 P1 O13 HO13 126.2 60.0
HO11 O11 P1 O13 233.2 60.0
O2' CM2 HM2 HM2A 120.0 120.0
O2' CM2 HM2 HM2B 240.0 240.0
HM2A CM2 HM2 HM2B 120.0 120.0
O2' CM2 HM2A HM2 240.0 240.0
O2' CM2 HM2A HM2B 120.0 120.0
HM2 CM2 HM2A HM2B 240.0 240.0
O2' CM2 HM2B HM2 120.0 120.0
O2' CM2 HM2B HM2A 240.0 240.0
HM2 CM2 HM2B HM2A 120.0 120.0
HOP1 OP1 P OP3 236.3 300.0